Escherichia coli B is a facultative anaerobe, mesophilic, Gram-negative prokaryote that has multiple antibiotic resistances.
antibiotic resistance Gram-negative rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 118681 | negative | rod-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 321 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 41709 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 118681 | CIP Medium 72 | Medium recipe at CIP | |||
| 118681 | CIP Medium 3 | Medium recipe at CIP |
| 118681 | Oxygen tolerancefacultative anaerobe |
| Test 1 | |
|---|---|
| @ref | 321 |
| Medium | Mueller-Hinton Agar |
| Manual_annotation | 1 |
| Inhibition zone diameter in mm | |
| Penicillin G | 12 |
| Oxacillin | 0 |
| Ampicillin | 28-30 |
| Ticarcillin | 36 |
| Mezlocillin | 28 |
| Cefalotin | 26-28 |
| Cefazolin | 30-32 |
| Cefotaxime | 44 |
| Aztreonam | 48 |
| Imipenem | 36 |
| Tetracycline | 30 |
| Chloramphenicol | 36 |
| Gentamycin | 26-28 |
| Amikacin | 28-30 |
| Vancomycin | 8 |
| Erythromycin | 10 |
| Lincomycin | 0 |
| Ofloxacin | 42-44 |
| Norfloxacin | 42 |
| Colistin | 16 |
| Pipemidic acid | 36 |
| Nitrofurantoin | 40 |
| Bacitracin | 0 |
| Polymyxin b | 16 |
| Kanamycin | 38 |
| Neomycin | 24 |
| Doxycycline | 26 |
| Ceftriaxone | 44 |
| Clindamycin | 0 |
| Fosfomycin | 42 |
| Moxifloxacin | 40 |
| Linezolid | 0 |
| Nystatin | 8 |
| Quinupristin/dalfopristin | 0 |
| Teicoplanin | 10 |
| Piperacillin/tazobactam | 30-32 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 118681 | 16947 ChEBI | citrate | - | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 118681 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 118681 | 17234 ChEBI | glucose | + | fermentation | |
| 118681 | 17234 ChEBI | glucose | + | degradation | |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 118681 | 17716 ChEBI | lactose | + | fermentation | |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 118681 | 15792 ChEBI | malonate | - | assimilation | |
| 118681 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 118681 | 17632 ChEBI | nitrate | + | reduction | |
| 118681 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 118681 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 118681 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118681 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118681 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 118681 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118681 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118681 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118681 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 118681 | oxidase | - | ||
| 118681 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 118681 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 118681 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence LC595312 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM3442472v1 assembly for Escherichia coli ATCC 11303 | complete | 562 | 99.38 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Escherichia coli JCM:20137 gene for 16S rRNA, partial sequence | LC595312 | 1464 | 562 |
| Topic | Title | Authors | Journal | DOI | Year | |
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| Spray-Drying Microencapsulation of Artemisia herba-alba Phenolic Extract: Physicochemical Properties, Structural Characterization, and Bioactivity. | Lemmadi S, Dumas E, Adoui F, Agusti G, Vessot-Crastes S, Medfai W, Gharsallaoui A. | Molecules | 10.3390/molecules30193904 | 2025 | ||
| Establishing Host-Virus Link Through Host Metabolism: Viral DNA SIP Validation Using T4 Bacteriophage and E. coli. | Ngo VQH, Sotomski M, Guenne A, Mariadassou M, Krupovic M, Enault F, Bize A. | Curr Microbiol | 10.1007/s00284-024-03774-x | 2024 | ||
| Characterization of phage vB_EcoS-EE09 infecting E. coli DSM613 Isolated from Wastewater Treatment Plant Effluent and Comparative Proteomics of the Infected and Non-Infected Host | Barrero-Canosa J, Wang L, Oyugi A, Klaes S, Fischer P, Adrian L, Szewzyk U, Cooper M. | Microorganisms | 2023 | |||
| Monitoring phage infection and lysis of surface-immobilized bacteria by QCM-D. | Pothineni BK, Probst R, Kiefer D, Dobretzberger V, Barisic I, Grundmeier G, Keller A. | Anal Bioanal Chem | 10.1007/s00216-025-05803-5 | 2025 | ||
| Transcriptome | Depletion of m6A-RNA in Escherichia coli reduces the infectious potential of T5 bacteriophage. | Saikia B, Riquelme-Barrios S, Carell T, Brameyer S, Jung K. | Microbiol Spectr | 10.1128/spectrum.01124-24 | 2024 | |
| Filamentous bacteriophage M13 induces proinflammatory responses in intestinal epithelial cells. | Varadan AC, Grasis JA. | Infect Immun | 10.1128/iai.00618-24 | 2025 | ||
| Proof-of-Concept Standardized Approach Using a Single-Disk Method Analogous to Antibiotic Disk Diffusion Assays for Routine Phage Susceptibility Testing in Diagnostic Laboratories. | Skusa R, Gross J, Kohlen J, Schafmayer C, Ekat K, Podbielski A, Warnke P. | Appl Environ Microbiol | 10.1128/aem.00309-22 | 2022 | ||
| Genetics | The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses. | Zhai X, Castro-Mejia JL, Gobbi A, Aslampaloglou A, Kot W, Nielsen DS, Deng L. | Microbiome | 10.1186/s40168-023-01632-9 | 2023 | |
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| Bacterial Consumption of T4 Phages. | Godon JJ, Bize A, Ngo H, Cauquil L, Almeida M, Petit MA, Zemb O. | Microorganisms | 10.3390/microorganisms9091852 | 2021 | ||
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| Screening of Anorectal and Oropharyngeal Samples Fails to Detect Bacteriophages Infecting Neisseria gonorrhoeae. | Laumen JGE, Abdellati S, Manoharan-Basil SS, Van Dijck C, Van den Bossche D, De Baetselier I, de Block T, Malhotra-Kumar S, Soentjes P, Pirnay JP, Kenyon C, Merabishvili M. | Antibiotics (Basel) | 10.3390/antibiotics11020268 | 2022 | ||
| Unveiling the Broad-Spectrum Virucidal Potential of Purified Clinoptilolite-Tuff. | Sarabi A, Nizet S, Rohrich A, Tschegg C. | Microorganisms | 10.3390/microorganisms12081572 | 2024 | ||
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| Cultivation | SELECTIVE MEDIA FOR THE ISOLATION OF PASTEURELLA PESTIS. | KNISELY RF, SWANEY LM, FRIEDLANDER H. | J Bacteriol | 10.1128/jb.88.2.491-496.1964 | 1964 | |
| Serological study of trichloroacetic acid extracts of Bacteroides fragilis. | Abshire RL, Dowell VR, Lombard GL. | J Clin Microbiol | 10.1128/jcm.9.2.274-279.1979 | 1979 | ||
| Stress | The thermal inactivation of T4 and lambda bacteriophage. | Pollard EC, Solosko W. | Biophys J | 10.1016/s0006-3495(71)86195-7 | 1971 | |
| Metabolism | Comparative study of glucose catabolism by the radiorespirometric method. | WANG CH, STERN I, GILMOUR CM, KLUNGSOYR S, REED DJ, BIALY JJ, CHRISTENSEN BE, CHELDELIN VH. | J Bacteriol | 10.1128/jb.76.2.207-216.1958 | 1958 | |
| Metabolism | Relationship between catabolism of glycerol and metabolism of hexosephosphate derivatives by Pseudomonas aeruginosa. | Heath HE, Gaudy ET. | J Bacteriol | 10.1128/jb.136.2.638-646.1978 | 1978 | |
| Pathogenicity | Isolation of a polypeptide that has lymphocyte-differentiating properties and is probably represented universally in living cells. | Goldstein G, Scheid M, Hammerling U, Schlesinger DH, Niall HD, Boyse EA. | Proc Natl Acad Sci U S A | 10.1073/pnas.72.1.11 | 1975 | |
| Numerical Taxonomy of Heterotrophic Bacteria Growing in Association with Continuous-Culture Chlorella sorokiniana. | Litchfield CD, Colwell RR, Prescott JM. | Appl Microbiol | 10.1128/am.18.6.1044-1049.1969 | 1969 | ||
| Enzymology | Sampling submicron T1 bacteriophage aerosols. | Harstad JB. | Appl Microbiol | 10.1128/am.13.6.899-908.1965 | 1965 | |
| The amino acid pool in Escherichia coli. | BRITTEN RJ, McCLURE FT. | Bacteriol Rev | 10.1128/br.26.3.292-335.1962 | 1962 | ||
| Optimising two-dye microarray designs for estimating associations with a quantitative trait. | Horgan GW. | J Biotechnol | 10.1016/j.jbiotec.2005.02.016 | 2005 | ||
| Metabolism | Marine bacteria which produce tetrodotoxin. | Simidu U, Noguchi T, Hwang DF, Shida Y, Hashimoto K. | Appl Environ Microbiol | 10.1128/aem.53.7.1714-1715.1987 | 1987 | |
| Pathogenicity | Increase in sensitivity to antibiotics and lysozyme on deletion of lipopolysaccharides in Escherichia coli strains. | Tamaki S, Matsuhashi M. | J Bacteriol | 10.1128/jb.114.1.453-454.1973 | 1973 | |
| Metabolism | Mycocerein, a novel antifungal peptide antibiotic produced by Bacillus cereus. | Wakayama S, Ishikawa F, Oishi K. | Antimicrob Agents Chemother | 10.1128/aac.26.6.939 | 1984 | |
| Functional characterization of two defensin isoforms of the hard tick Ixodes ricinus. | Chrudimska T, Slaninova J, Rudenko N, Ruzek D, Grubhoffer L. | Parasit Vectors | 10.1186/1756-3305-4-63 | 2011 |
| #321 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 613 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI): |
| #41709 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118681 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103914 |
| #124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data