Escherichia coli U5/41, U 5/41 | Type strain | DSM 30083, ATCC 11775, CCM 5172, CIP 54.8, IAM 12119, JCM 1649, NCDO 1989, NCTC 9001, WDCM 00090, BCRC 10675, CCUG 24, CCUG 29300, CECT 515, CGMCC 1.2993, KCTC 2441, LMG 2092, NBRC 102203, NCIMB 11943, VTT E-94564, UCCCB113, WDCM 00155 | BacDiveID:4907

Strain identifier

BacDive ID: 4907

Type strain:

Species: Escherichia coli

Strain Designation: U5/41, U 5/41

Culture col. no.: DSM 30083, ATCC 11775, CCM 5172, CIP 54.8, IAM 12119, JCM 1649, NCDO 1989, NCTC 9001, WDCM 00090, BCRC 10675, CCUG 24, CCUG 29300, CECT 515, CGMCC 1.2993, KCTC 2441, LMG 2092, NBRC 102203, NCIMB 11943, VTT E-94564, UCCCB113, WDCM 00155

Strain history: CIP <- 1954, NCTC <- 1952, F. Kauffmann, Copenhagen, Denmark: strain U 5/41

NCBI tax ID(s): 866789 (strain), 562 (species)

SI-ID 14277

LMG 2092, ATCC 11775, CCM 5172, CCUG 24, CECT 515, IAM 12119, JCM 1649, NCDO 1989, NCIB 11943, CCUG 29300, CCRC 10675, NCIMB 11943, CIP 54.8, LMD 54.8, NCFB 1989, KCTC 2441, NCCB 54008, BCRC 10675, CCT 0547, CCT 1357, NBIMCC 3398, NCAIM B.01874, CDBB 964, ACM 1803, ICMP 15663, CNCTC 6859, CGMCC 1.2389, CGMCC 1.2993, NCTC 9001, NBRC 102203, VTT E-94564, DSM 30083

Special Collections

Escherichia phage T4 (Escherichia virus T4) Escherichia phage T3 (Escherichia virus T7) Escherichia phage T6 (Escherichia virus T4) Escherichia phage T7 (Escherichia virus T7) Escherichia phage T1 (Escherichia virus T1) Escherichia phage T2 (Escherichia virus T4) Escherichia phage T5 (Escherichia virus T5) Escherichia phage vB_EcoP-PT-JD01 Escherichia phage vB_EcoS-PT-JD02

Other strains from Escherichia coli

Section

Escherichia coli U5/41 is a facultative anaerobe, Gram-negative, motile human pathogen that has multiple antibiotic resistances and was isolated from urine.

antibiotic resistance
Gram-negative
motile
rod-shaped
facultative anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia coli**
	Full Scientific Name (LPSN)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Bacillus coli"

Information on morphological and physiological properties Morphology

[Ref.: #118688]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.75

[Ref.: #118688]	Cell shape	rod-shaped

[Ref.: #118688]	Motility	yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 72- for trypto casein soja agar

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #118688]

Culture medium

CIP Medium 72

[Ref.: #118688]

Culture medium growth

[Ref.: #118688]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9115]			growth	37 °C
[Ref.: #38566]			growth	30 °C
[Ref.: #67770]			growth	37 °C
[Ref.: #67772]			optimum	37 °C
[Ref.: #118688]			growth	10-41 °C
[Ref.: #118688]		no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118688]

Oxygen tolerance

facultative anaerobe

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Test 5

Test 6

Test 7

Reference

[Ref.: #9115]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
20
30
26
18
26
34-36
34
30-32
26-28
28-30
22
22
6
8-10
resistant0
32-34
36-38
14
26
24
resistant0
16
20
18
22
32
resistant0
30-32
32-34
resistant0
resistant0
resistant0
resistant0
26

[Ref.: #9115]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
20
32
26
18
28
36
36
32
26
30
20
22-24
8
10
resistant0
32-34
40
14
40
24-26
resistant0
14
20-22
16-18
20-22
32
resistant0
32
34
resistant0
resistant0
resistant0
resistant0
26-28

[Ref.: #9115]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
resistant0
resistant0
18-20
30
26
18
26-28
38
36
34
28
30
22-24
24
resistant0
10
resistant0
34
38
14
28
26
resistant0
14-16
24
20
22
34
resistant0
28-30
34
resistant0
resistant0
resistant0
resistant0
26

[Ref.: #9115]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
20
30
28
20
28-30
36-38
36-38
34
26-28
26
22
22
resistant0
10
resistant0
32-34
38-40
14-16
30
28
resistant0
16
22
20
22
34-36
resistant0
32
32-34
resistant0
resistant0
resistant0
resistant0
28

[Ref.: #9115]
Mueller-Hinton Agar
37


yes
Inhibition zone diameter in mm
resistant0
resistant0
14
22
18
12
18
24
24
22
20
18-20
14
14
resistant0
6
resistant0
22
22
8
22
16
resistant0
10
16
14
16
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.

[Ref.: #9115]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18
28
24
18
24-26
32
32
30
22
28
20
22
resistant0
10
resistant0
32
34-36
14
26
24
resistant0
14-16
22
18
20
30
resistant0
30
32
resistant0
resistant0
resistant0
resistant0
24

[Ref.: #9115]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18
28
24
18
24-26
32
32
30
22
28
20
22
resistant0
10
resistant0
32
34-36
14
26
24
resistant0
14-16
22
18
20
30
resistant0
30
32
resistant0
resistant0
resistant0
resistant0
24

Only first 15 entries are displayed. Click here to see all.

Ability of spore formation

no Confidence in %100

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]		arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118688]		citrate ChEBI	-	carbon source
[Ref.: #68368]		citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68371]		D-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118688]		esculin ChEBI	+	hydrolysis
[Ref.: #68371]		esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]		gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118688]		glucose ChEBI	+	fermentation
[Ref.: #68371]		glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118688]		lactose ChEBI	+	fermentation
[Ref.: #68371]		lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118688]		malonate ChEBI	-	assimilation
[Ref.: #68371]		maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118688]		mannitol ChEBI	+	fermentation
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]		N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118688]		nitrate ChEBI	+	reduction
[Ref.: #68368]		nitrate ChEBI	+	reduction	* from API 20E
[Ref.: #118688]		nitrite ChEBI	+	reduction
[Ref.: #68368]		ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118688]		sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]		sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]		trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]		tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]		urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118688]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #118688]		indole ChEBI	yes
[Ref.: #68368]		acetoin ChEBI	no	* from API 20E
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]		indole ChEBI	yes	* from API 20E
[Ref.: #68368]		nitrite ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #118688]		acetoin ChEBI	-
[Ref.: #118688]		glucose ChEBI		+
[Ref.: #68368]		acetoin ChEBI	-			* from API 20E
[Ref.: #68368]		indole ChEBI			+	* from API 20E

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118688]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]		arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #118688]		beta-galactosidase	+	3.2.1.23
[Ref.: #68382]		beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #118688]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68368]		cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68382]		esterase (C 4)	-		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	-		* from API zym
[Ref.: #118688]		gelatinase	-
[Ref.: #68368]		gelatinase	-		* from API 20E
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #118688]		lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118688]		ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]		ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #118688]		oxidase	-
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #118688]		tryptophan deaminase	-
[Ref.: #68368]		tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #118688]		urease	-	3.5.1.5
[Ref.: #68368]		urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9115]	17637	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17628	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17630	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17631	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17632	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17633	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17634	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17635	+	-	+/-	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	17636	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9115]	16624	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #9115]	14904	-	+	-	+	+	+	-	-	-	-	+	+	+	+	+	+	-	-	+	+	-	-	+	-	-	-	+	-	+	+	+	-	+	-	-	-	-	-	-	+	-	-	+	-	+	-	-	+	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #118688]	3070	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	-	+	+	+	+	+	-	-	+	+	-	-	-	-	-	+	+	-	+	-	-	+	-	+	-	-	-	-	+	+	+	-	-	+	+	-	-	-	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	+	+	-	-	+	+	+	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118688]	12799	-	+	-	-	-	+	+	-	+	-	+	+	-	+	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9115]	Sample type/isolated from	urine

[Ref.: #67770]	Sample type/isolated from	Urine

[Ref.: #67772]	Sample type/isolated from	Urine
[Ref.: #67772]	Sampling date	1991

[Ref.: #118688]	Sample type/isolated from	Human, Urine
[Ref.: #118688]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #118688]	Country	Denmark
[Ref.: #118688]	Country ISO 3 Code	DNK
[Ref.: #118688]	Continent	Europe
[Ref.: #118688]	Isolation date	1952
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Urine

What are isolation sources categories?

Global distribution of 16S sequence LC069032 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	5613
Soil Samples	2111
Animal Samples	88071
Plant Samples	1835
Total Samples	97630

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9115]	Pathogenicity (human)	yes
[Ref.: #9115]	Pathogenicity (animal)	yes
[Ref.: #9115]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	2
[Ref.: #118688]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Escherichia coli gene for 16S ribosomal RNA, partial sequence, strain: JCM 1649	LC069032	1464	GenBank ENA	562 tax ID
[Ref.: #20218]	E.coli (ATCC 11775T) gene for 16S rRNA	X80725	1450	GenBank ENA	866789 tax ID	*
[Ref.: #20218]	Escherichia coli strain DSM 30083 16S ribosomal RNA gene, partial sequence	HQ012019	936	GenBank ENA	866789 tax ID	*
[Ref.: #20218]	Escherichia coli gene for 16S ribosomal RNA, partial sequence, strain: JCM1649	AB242910	1110	GenBank ENA	866789 tax ID	*
[Ref.: #20218]	Escherichia coli strain KCTC 2441 16S ribosomal RNA gene, partial sequence	EU014689	1541	GenBank ENA	562 tax ID	*
[Ref.: #20218]	Escherichia coli gene for 16S rRNA, partial sequence, strain: NBRC 102203	AB681728	1467	GenBank ENA	562 tax ID	*
[Ref.: #124043]	Escherichia coli strain NBRC 102203 16S ribosomal RNA gene, partial sequence.	MN527275	491	GenBank ENA	562 tax ID	*
[Ref.: #124043]	Escherichia coli strain NBRC 102203 16S ribosomal RNA gene, partial sequence.	MN535394	491	GenBank ENA	562 tax ID	*
[Ref.: #124043]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 16S ribosomal RNA gene, partial sequence.	OR853724	1450	GenBank ENA	866789 tax ID	*
[Ref.: #124043]	Escherichia coli strain SAM-14 16S ribosomal RNA gene, partial sequence.	KJ668602	1280	GenBank ENA	562 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Escherichia coli NCTC9001	GCA_900706755	contig	GenBank ENA	562 tax ID
[Ref.: #66792]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	GCA_024519395	scaffold	GenBank ENA	866789 tax ID	*
[Ref.: #66792]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 ATCC 11775	GCA_000734955	contig	GenBank ENA	866789 tax ID	*
[Ref.: #66792]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	GCA_000613265	contig	GenBank ENA	866789 tax ID	*
[Ref.: #66792]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	866789.18	complete	PATRIC	866789 tax ID	*
[Ref.: #66792]	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	866789.7	wgs	PATRIC	866789 tax ID	*

GC-content

49.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 PATRIC: 866789.18
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 ATCC 11775 NCBI: GCA_003697165.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.75	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.775	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	67.856	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.698	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	76.475	no

Availability in culture collections External links

Culture collection no.

DSM 30083, ATCC 11775, CCM 5172, CIP 54.8, IAM 12119, JCM 1649, NCDO 1989, NCTC 9001, WDCM 00090, BCRC 10675, CCUG 24, CCUG 29300, CECT 515, CGMCC 1.2993, KCTC 2441, LMG 2092, NBRC 102203, NCIMB 11943, VTT E-94564, UCCCB113, WDCM 00155

SI-ID 14277

*


[Ref.: #124042]	Escherichia phage T4 (Escherichia virus T4)
[Ref.: #124042]	Escherichia phage T3 (Escherichia virus T7)
[Ref.: #124042]	Escherichia phage T6 (Escherichia virus T4)
[Ref.: #124042]	Escherichia phage T7 (Escherichia virus T7)
[Ref.: #124042]	Escherichia phage T1 (Escherichia virus T1)
[Ref.: #124042]	Escherichia phage T2 (Escherichia virus T4)
[Ref.: #124042]	Escherichia phage T5 (Escherichia virus T5)
[Ref.: #124042]	Escherichia phage vB_EcoP-PT-JD01
[Ref.: #124042]	Escherichia phage vB_EcoS-PT-JD02

References

#9115

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30083

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38566 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74405

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14277.1 )

#118688 Collection of Institut Pasteur ; Curators of the CIP; CIP 54.8

#124042

Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardà: PhageDive .

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .