Escherichia coli K12 O Rough H48 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from human faeces, 1922.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4259 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 41793 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 118690 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 90 |
| 4259 | Compoundapotryptophanase |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 118690 | 16947 ChEBI | citrate | - | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 118690 | 17234 ChEBI | glucose | + | fermentation | |
| 118690 | 17716 ChEBI | lactose | + | fermentation | |
| 118690 | 15792 ChEBI | malonate | - | assimilation | |
| 118690 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 118690 | 17632 ChEBI | nitrate | + | reduction | |
| 118690 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 118690 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 118690 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118690 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118690 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 118690 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118690 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118690 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118690 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 118690 | oxidase | - | ||
| 118690 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 118690 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 118690 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM1050941v1 assembly for Escherichia coli NBRC 3301 | complete | 562 | 98.89 | |||
| 66792 | ASM653850v1 assembly for Escherichia coli NBRC 3301 | contig | 562 | 77.09 | |||
| 66792 | 31885_A02 assembly for Escherichia coli NCTC10538 | contig | 562 | 38.38 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Escherichia coli gene for 16S rRNA, partial sequence, strain: NBRC 3301 | AB680053 | 1467 | 562 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 90.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 57.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 83.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.78 | yes |
| 125438 | aerobic | aerobicⓘ | no | 60.47 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.25 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.36 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| In vitro antimicrobial activity of an oral spray combining 0.15% benzydamine hydrochloride and 0.5% cetylpyridinium chloride. | de Joannon AC, Eggers M, Boltri L. | Drugs Context | 10.7573/dic.2024-9-3 | 2025 | ||
| Cefsulodin and Vancomycin: A Supplement for Chromogenic Coliform Agar for Detection of Escherichia coli and Coliform Bacteria from Different Water Sources. | Schalli M, Inwinkl SM, Platzer S, Baumert R, Reinthaler FF, Ofner-Kopeinig P, Haas D. | Microorganisms | 10.3390/microorganisms10122499 | 2022 | ||
| Investigations of microbial adaptation to singular, binary, and fully formulated quaternary ammonium compounds. | Willmott T, Kelly PP, Jadaan L, Gifford DR, Mercer SD, Humphreys GJ, Knight CG, Lu JR, McBain AJ. | Appl Environ Microbiol | 10.1128/aem.00666-24 | 2024 | ||
| Exploring the identification of multiple bacteria on stainless steel using multi-scale spectral imaging from microscopic to macroscopic. | Xu JL, Herrero-Langreo A, Lamba S, Ferone M, Swanson A, Caponigro V, Scannell AGM, Gowen AA. | Sci Rep | 10.1038/s41598-022-19617-3 | 2022 | ||
| Antimicrobials cetylpyridinium-chloride and miramistin demonstrate non-inferiority and no "protein-error" compared to established wound care antiseptics in vitro. | Rembe JD, Thompson VD, Stuermer EK. | AIMS Microbiol | 10.3934/microbiol.2022026 | 2022 | ||
| Bacteria Are New Targets for Inhibitors of Human Farnesyltransferase. | Weber L, Hagemann A, Kaltenhauser J, Besser M, Rockenfeller P, Ehrhardt A, Stuermer E, Bachmann HS. | Front Microbiol | 10.3389/fmicb.2021.628283 | 2021 | ||
| Catestatin selects for colonization of antimicrobial-resistant gut bacterial communities. | Gonzalez-Davila P, Schwalbe M, Danewalia A, Dalile B, Verbeke K, Mahata SK, El Aidy S. | ISME J | 10.1038/s41396-022-01240-9 | 2022 | ||
| Retention of E. coli and water on the skin after liquid contact. | Pitol AK, Kohn T, Julian TR. | PLoS One | 10.1371/journal.pone.0238998 | 2020 | ||
| Plasma-MDS, a metadata schema for plasma science with examples from plasma technology. | Franke S, Paulet L, Schafer J, O'Connell D, Becker MM. | Sci Data | 10.1038/s41597-020-00771-0 | 2020 | ||
| Comprehensive Analysis of Zinc Derivatives Pro-proliferative, Anti-Apoptotic and Antimicrobial Effect on Human Fibroblasts and Keratinocytes in a Simulated, Nutrient-deficient Environment In Vitro. | Rembe JD, Boehm JK, Fromm-Dornieden C, Hauer N, Stuermer EK. | Int J Mol Cell Med | 10.22088/ijmcm.bums.9.2.165 | 2020 | ||
| Metabolism | Gut bacteria-derived 5-hydroxyindole is a potent stimulant of intestinal motility via its action on L-type calcium channels. | Waclawikova B, Bullock A, Schwalbe M, Aranzamendi C, Nelemans SA, van Dijk G, El Aidy S. | PLoS Biol | 10.1371/journal.pbio.3001070 | 2021 | |
| Phytochemical Characterization and In Vitro Anti-Inflammatory, Antioxidant and Antimicrobial Activity of Combretum collinum Fresen Leaves Extracts from Benin. | Marquardt P, Seide R, Vissiennon C, Schubert A, Birkemeyer C, Ahyi V, Fester K. | Molecules | 10.3390/molecules25020288 | 2020 | ||
| Pathogenicity | Cold atmospheric air plasma sterilization against spores and other microorganisms of clinical interest. | Klampfl TG, Isbary G, Shimizu T, Li YF, Zimmermann JL, Stolz W, Schlegel J, Morfill GE, Schmidt HU. | Appl Environ Microbiol | 10.1128/aem.00583-12 | 2012 | |
| Personal Protective Equipment in Animal Research. | Villano JS, Follo JM, Chappell MG, Collins MT. | Comp Med | 2017 | |||
| Microwave inactivation of Escherichia coli K12 CIP 54.117 in a gel medium: Experimental and numerical study | Hamoud-Agha MM, Curet S, Simonin H, Boillereaux L. | Journal of food engineering. | 10.1016/j.jfoodeng.2012.11.030 | 2013 | ||
| Metabolism | Investigation of the first step of biotin biosynthesis in Bacillus sphaericus. Purification and characterization of the pimeloyl-CoA synthase, and uptake of pimelate. | Ploux O, Soularue P, Marquet A, Gloeckler R, Lemoine Y. | Biochem J | 10.1042/bj2870685 | 1992 | |
| Thiophene-Linked 1,2,4-Triazoles: Synthesis, Structural Insights and Antimicrobial and Chemotherapeutic Profiles. | El-Emam NA, El-Ashmawy MB, Mohamed AAB, Habib EE, Thamotharan S, Abdelbaky MSM, Garcia-Granda S, Moustafa MAA. | Pharmaceuticals (Basel) | 10.3390/ph17091123 | 2024 | ||
| Synthesis and in vitro antibacterial, antifungal, anti-proliferative activities of novel adamantane-containing thiazole compounds. | Warda ET, El-Ashmawy MB, Habib EE, Abdelbaky MSM, Garcia-Granda S, Thamotharan S, El-Emam AA. | Sci Rep | 10.1038/s41598-022-25390-0 | 2022 | ||
| Lysozyme Peptides as a Novel Nutra-Preservative to Control Some Food Poisoning and Food Spoilage Microorganisms. | Abdou AM, Awad DAB. | Probiotics Antimicrob Proteins | 10.1007/s12602-024-10226-2 | 2025 | ||
| Antimicrobial Polymer Films with Grape Seed and Skin Extracts for Food Packaging. | Ivanov Y, Godjevargova T. | Microorganisms | 10.3390/microorganisms12071378 | 2024 | ||
| Deactivating environmental strains of Escherichia coli, Enterococcus faecalis and Clostridium perfringens from a real wastewater effluent using UV-LEDs. | Kamel A, Fuentes M, Palacios AM, Rodrigo MJ, Vivar M. | Heliyon | 10.1016/j.heliyon.2022.e12628 | 2022 | ||
| The Use of Coffee Cherry Pulp Extract as an Alternative to an Antibiotic Growth Promoter in Broiler Diets. | Tapingkae W, Srinual P, Khamtavee P, Pintalerd N, Chaiyaso T, Yachai M, Kanmanee C, Lumsangkul C, Srinual O. | Animals (Basel) | 10.3390/ani15020244 | 2025 | ||
| Time-dose reciprocity mechanism for the inactivation of Escherichia coli explained by a stochastic process with two inactivation effects. | Matsumoto T, Tatsuno I, Yoshida Y, Tomita M, Hasegawa T. | Sci Rep | 10.1038/s41598-022-26783-x | 2022 | ||
| Natural Polyphenols for the Preservation of Meat and Dairy Products. | Ullah H, Hussain Y, Santarcangelo C, Baldi A, Di Minno A, Khan H, Xiao J, Daglia M. | Molecules | 10.3390/molecules27061906 | 2022 | ||
| Enzymology | Inactivation kinetics of 280 nm UV-LEDs against Mycobacterium abscessus in water. | Song JJX, Oguma K, Takizawa S. | Sci Rep | 10.1038/s41598-023-29338-w | 2023 | |
| Medicinal plant Miconia albicans synergizes with ampicillin and ciprofloxacin against multi-drug resistant Acinetobacter baumannii and Staphylococcus aureus. | de Jesus GS, Silva Trentin D, Barros TF, Ferreira AMT, de Barros BC, de Oliveira Figueiredo P, Garcez FR, Dos Santos EL, Micheletti AC, Yoshida NC. | BMC Complement Med Ther | 10.1186/s12906-023-04147-w | 2023 | ||
| Metabolism | Bidirectional Cell-Cell Communication via Indole and Cyclo(Pro-Tyr) Modulates Interspecies Biofilm Formation. | Hashidoko Y, Kim D. | Appl Environ Microbiol | 10.1128/aem.01277-21 | 2021 | |
| Metabolism | Induction of biofilm formation in the betaproteobacterium Burkholderia unamae CK43B exposed to exogenous indole and gallic acid. | Kim D, Sitepu IR, Hashidoko Y. | Appl Environ Microbiol | 10.1128/aem.01209-13 | 2013 | |
| Antimicrobial Food Packaging with Biodegradable Polymers and Bacteriocins. | Gumienna M, Gorna B. | Molecules | 10.3390/molecules26123735 | 2021 | ||
| Polymeric Antimicrobial Food Packaging and Its Applications. | Huang T, Qian Y, Wei J, Zhou C. | Polymers (Basel) | 10.3390/polym11030560 | 2019 | ||
| Pathogenicity | The mechanism of the bactericidal activity of hinokitiol. | Morita Y, Sakagami Y, Okabe T, Ohe T, Inamori Y, Ishida N. | Biocontrol Sci | 10.4265/bio.12.101 | 2007 | |
| Pathogenicity | An Eco-Friendly Technique: Solvent-Free Microwave Synthesis and Docking Studies of Some New Pyridine Nucleosides and Their Pharmacological Significance. | Alrobaian M, Azwari SA, Belal A, Eldeab HA. | Molecules | 10.3390/molecules24101969 | 2019 | |
| Pathogenicity | Synthesis, antimicrobial, anti-biofilm evaluation, and molecular modelling study of new chalcone linked amines derivatives. | El-Messery SM, Habib EE, Al-Rashood STA, Hassan GS. | J Enzyme Inhib Med Chem | 10.1080/14756366.2018.1461855 | 2018 | |
| Synthesis and antimicrobial activity of N'-heteroarylidene-1-adamantylcarbohydrazides and (±)-2-(1-adamantyl)-4-acetyl-5-[5-(4-substituted phenyl-3-isoxazolyl)]-1,3,4-oxadiazolines. | El-Emam AA, Alrashood KA, Al-Omar MA, Al-Tamimi AM. | Molecules | 10.3390/molecules17033475 | 2012 | ||
| Synthesis, Antimicrobial and Hypoglycemic Activities of Novel N-(1-Adamantyl)carbothioamide Derivatives. | Al-Abdullah ES, Al-Tuwaijri HM, Hassan HM, Al-Alshaikh MA, Habib EE, El-Emam AA. | Molecules | 10.3390/molecules20058125 | 2015 | ||
| Pathogenicity | Bacillus cereus Response to a Proanthocyanidin Trimer, a Transcriptional and Functional Analysis. | Tamura T, Ozawa M, Tanaka N, Arai S, Mura K. | Curr Microbiol | 10.1007/s00284-016-1032-x | 2016 | |
| Antimicrobial and hypoglycemic activities of novel N-Mannich bases derived from 5-(1-adamantyl)-4-substituted-1,2,4-triazoline-3-thiones. | Al-Abdullah ES, Al-Tuwaijri HM, Hassan HM, Haiba ME, Habib EE, El-Emam AA. | Int J Mol Sci | 10.3390/ijms151222995 | 2014 | ||
| Synthesis and antimicrobial activity of new 5-(2-thienyl)-1,2,4-triazoles and 5-(2-thienyl)-1,3,4-oxadiazoles and related derivatives. | Al-Omar MA. | Molecules | 10.3390/molecules15010502 | 2010 | ||
| Pathogenicity | Green-leaf-derived C6-aroma compounds with potent antibacterial action that act on both Gram-negative and Gram-positive bacteria. | Nakamura S, Hatanaka A. | J Agric Food Chem | 10.1021/jf025808c | 2002 | |
| Metabolism | Escherichia coli-catalyzed bioelectrochemical oxidation of acetate in the presence of mediators. | Wang YF, Cheng SS, Tsujimura S, Ikeda T, Kano K. | Bioelectrochemistry | 10.1016/j.bioelechem.2005.11.003 | 2006 | |
| Pathogenicity | Synthesis and antimicrobial activity of some novel 5-alkyl-6-substituted uracils and related derivatives. | Al-Turkistani AA, Al-Deeb OA, El-Brollosy NR, El-Emam AA. | Molecules | 10.3390/molecules16064764 | 2011 | |
| Repressive effects of yeast extract on photoreactivation of Escherichia coli. | Oguma J, Katayama H, Mitani H, Ohgaki S. | Water Sci Technol | 10.2166/wst.2004.0011 | 2004 | ||
| Natural cinnamic acids, synthetic derivatives and hybrids with antimicrobial activity. | Guzman JD. | Molecules | 10.3390/molecules191219292 | 2014 | ||
| With respect to coefficient of linear thermal expansion, bacterial vegetative cells and spores resemble plastics and metals, respectively. | Nakanishi K, Kogure A, Fujii T, Kokawa R, Deuchi K, Kuwana R, Takamatsu H. | J Nanobiotechnology | 10.1186/1477-3155-11-33 | 2013 | ||
| Synthesis, antimicrobial, and anti-inflammatory activity, of novel S-substituted and N-substituted 5-(1-adamantyl)-1,2,4-triazole-3-thiols. | Al-Abdullah ES, Asiri HH, Lahsasni S, Habib EE, Ibrahim TM, El-Emam AA. | Drug Des Devel Ther | 10.2147/dddt.s62465 | 2014 | ||
| Combined effects of hydrostatic pressure, temperature, and the addition of allyl isothiocyanate on inactivation of Escherichia coli. | Ogawa T, Nakatani A, Matsuzaki H, Isobe S, Isshiki K. | J Food Prot | 10.4315/0362-028x-63.7.884 | 2000 | ||
| Metabolism | Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas. | Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques MA, Belin E, Boureau T. | Mol Plant Pathol | 10.1111/mpp.12737 | 2019 | |
| Development of method for evaluating cell hardness and correlation between bacterial spore hardness and durability. | Nakanishi K, Kogure A, Fujii T, Kokawa R, Deuchi K. | J Nanobiotechnology | 10.1186/1477-3155-10-22 | 2012 | ||
| Synthesis, antimicrobial, and anti-inflammatory activities of novel 5-(1-adamantyl)-4-arylideneamino-3-mercapto-1,2,4-triazoles and related derivatives. | Al-Omar MA, Al-Abdullah ES, Shehata IA, Habib EE, Ibrahim TM, El-Emam AA. | Molecules | 10.3390/molecules15042526 | 2010 | ||
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| Synthesis, antimicrobial and antiviral testing of some new 1-adamantyl analogues. | Hassan GS, El-Emam AA, Gad LM, Barghash AE. | Saudi Pharm J | 10.1016/j.jsps.2010.05.004 | 2010 | ||
| New enzymatic method with tryptophanase for determining potassium in serum. | Kimura S, Asari S, Hayashi S, Yamaguchi Y, Fushimi R, Amino N, Miyai K. | Clin Chem | 10.1093/clinchem/38.1.44 | 1992 | ||
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| Quaternary Ammonium Compounds (QACs) and Ionic Liquids (ILs) as Biocides: From Simple Antiseptics to Tunable Antimicrobials. | Vereshchagin AN, Frolov NA, Egorova KS, Seitkalieva MM, Ananikov VP. | Int J Mol Sci | 10.3390/ijms22136793 | 2021 | ||
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| A Pilot Study in Humans on the Urinary Tract Excretion of the FimH Inhibitor 1-Deoxymannose. | Hayashi H, Miyazaki N, Kawakami T, Izumi S, Yoshinaga K. | Antibiotics (Basel) | 10.3390/antibiotics14050498 | 2025 | ||
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| Clear zone formation in microdroplets for high-throughput screening for lactic acid bacteria. | Mori K, Watanabe M, Nanri K, Matsukura S, Ota Y, Homma N, Noda N. | Front Microbiol | 10.3389/fmicb.2024.1452573 | 2024 | ||
| Testing Antimicrobial Properties of Human Lactoferrin-Derived Fragments. | Ostrowka M, Duda-Madej A, Pietluch F, Mackiewicz P, Gagat P. | Int J Mol Sci | 10.3390/ijms241310529 | 2023 | ||
| Significant Factors for Modelling Survival of Escherichia coli in Lake Sediments | Yoneda I, Nishiyama M, Watanabe T. | Microorganisms | 2024 | |||
| Analysis of cereal extracts as conditioning solutes to suppress the initial attachment of Escherichia coli to abiotic surfaces | Sakai H, Sakai T, Badr HAB, Kanemaru K, Yokoigawa K. | Eur Food Res Technol | 10.1007/s00217-020-03444-9 | 2021 | ||
| Atypical diarrhoeagenic Escherichia coli in milk related to a large foodborne outbreak. | Hirose S, Ohya K, Yoshinari T, Ohnishi T, Mizukami K, Suzuki T, Takinami K, Suzuki T, Lee K, Iyoda S, Akeda Y, Yahata Y, Tsuchihashi Y, Sunagawa T, Hara-Kudo Y. | Epidemiol Infect | 10.1017/s0950268823001395 | 2023 | ||
| Genetics | A HPLC-based Method for Counting the Genome Copy Number of Cells Allows the Production of a High-quality Mock Community of Bacterial Cells. | Ohyama Y, Miura T, Furukawa M, Shimamura M, Asami Y, Yamazoe A, Uchino Y, Kawasaki H. | Microbes Environ | 10.1264/jsme2.me24076 | 2025 | |
| Comprehensive investigation of Litsea cubeba antibacterial and antifungal activities across solid, liquid, and vapor phases against key human pathogens. | Sreepian PM, Popruk S, Rattanasinganchan P, Sreepian A. | Narra J | 10.52225/narra.v5i1.1685 | 2025 | ||
| Antimicrobial Properties of a Copper/Silicone Composite Membrane Prepared Using a Two-Step Immersion Process in Iodine and Copper Sulfate Solutions. | Takeshita J, Aoki S, Wada R, Osawa A, Sawai J. | Membranes (Basel) | 10.3390/membranes12111049 | 2022 | ||
| Single-Cell Analysis of the Antimicrobial and Bactericidal Activities of the Antimicrobial Peptide Magainin 2. | Hossain F, Billah MM, Yamazaki M. | Microbiol Spectr | 10.1128/spectrum.00114-22 | 2022 | ||
| Genetics | Zinc effects on bacteria: insights from Escherichia coli by multi-omics approach. | Rihacek M, Kosaristanova L, Fialova T, Kuthanova M, Eichmeier A, Hakalova E, Cerny M, Berka M, Palkovicova J, Dolejska M, Svec P, Adam V, Zurek L, Cihalova K. | mSystems | 10.1128/msystems.00733-23 | 2023 | |
| Evaluation of the Growth-Inhibitory Spectrum of Three Types of Cyanoacrylate Nanoparticles on Gram-Positive and Gram-Negative Bacteria. | Sarian FD, Ando K, Tsurumi S, Miyashita R, Ute K, Ohama T. | Membranes (Basel) | 10.3390/membranes12080782 | 2022 | ||
| Phylogeny | Cutibacterium acnes-derived extracellular vesicles promote tumor growth in renal cell carcinoma. | Jingushi K, Kawashima A, Tanikawa S, Saito T, Yamamoto A, Uemura T, Sassi N, Ishizuya Y, Yamamoto Y, Kato T, Hatano K, Hase H, Nonomura N, Tsujikawa K. | Cancer Sci | 10.1111/cas.16202 | 2024 | |
| Comparison of Antibiotic Resistance Profile of Escherichia coli between Pristine and Human-Impacted Sites in a River. | Nishimura E, Nishiyama M, Nukazawa K, Suzuki Y. | Antibiotics (Basel) | 10.3390/antibiotics10050575 | 2021 | ||
| Characterization of the Non-rhizobial Bacterial Community in the Nodule-Associated Soils of Akebono Soybeans and Isolation of Antibiotic Producing Amycolatopsis spp. | Kataoka R, Yamamura H, Hayakawa M. | Indian J Microbiol | 10.1007/s12088-022-00999-x | 2022 | ||
| A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes. | Koike K, Honda R, Aoki M, Yamamoto-Ikemoto R, Syutsubo K, Matsuura N. | Environ Microbiol Rep | 10.1111/1758-2229.13189 | 2023 | ||
| Evaluation of the Antioxidant Activity, Deodorizing Effect, and Antibacterial Activity of 'Porotan' Chestnut By-Products and Establishment of a Compound Paper. | Tsurunaga Y, Takahashi T. | Foods | 10.3390/foods10051141 | 2021 | ||
| Electrospinning Enables Opportunity for Green and Effective Antibacterial Coatings of Medical Devices. | Caporalini S, Azimi B, Zergat S, Ansari Chaharsoughi M, Maleki H, Batoni G, Danti S. | J Funct Biomater | 10.3390/jfb16070249 | 2025 | ||
| Metabolism | Discrimination of Escherichia coli O157, O26 and O111 from other serovars by MALDI-TOF MS based on the S10-GERMS method. | Ojima-Kato T, Yamamoto N, Suzuki M, Fukunaga T, Tamura H. | PLoS One | 10.1371/journal.pone.0113458 | 2014 | |
| Examination of electron stains as a substitute for uranyl acetate for the ultrathin sections of bacterial cells. | Yamaguchi K, Suzuki K, Tanaka K. | J Electron Microsc (Tokyo) | 10.1093/jmicro/dfp045 | 2010 | ||
| An exploratory MALDI-TOF MS library based on SARAMIS superspectra for rapid identification of Aspergillus section Nigri. | Ban S, Kasaishi R, Kamijo T, Noritake C, Kawasaki H. | Mycoscience | 10.47371/mycosci.2021.03.004 | 2021 | ||
| Development of robust isothermal RNA amplification assay for lab-free testing of RNA viruses. | Biyani R, Sharma K, Kojima K, Biyani M, Sharma V, Kumawat T, Juma KM, Yanagihara I, Fujiwara S, Kodama E, Takamura Y, Takagi M, Yasukawa K, Biyani M. | Sci Rep | 10.1038/s41598-021-95411-x | 2021 | ||
| Pathogenicity | Antimicrobial mechanisms due to hyperpolarisation induced by nanoporous Au. | Miyazawa N, Hakamada M, Mabuchi M. | Sci Rep | 10.1038/s41598-018-22261-5 | 2018 | |
| Enzymology | Kinetics of Bacterial Inactivation by Peroxynitric Acid in the Presence of Organic Contaminants. | Yokoyama T, Miyazaki S, Akagi H, Ikawa S, Kitano K. | Appl Environ Microbiol | 10.1128/aem.01860-20 | 2021 | |
| Non-Antibiotics Strategies to Control Salmonella Infection in Poultry. | Ruvalcaba-Gomez JM, Villagran Z, Valdez-Alarcon JJ, Martinez-Nunez M, Gomez-Godinez LJ, Ruesga-Gutierrez E, Anaya-Esparza LM, Arteaga-Garibay RI, Villarruel-Lopez A. | Animals (Basel) | 10.3390/ani12010102 | 2022 | ||
| Genetics | Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements. | Tourlousse DM, Narita K, Miura T, Sakamoto M, Ohashi A, Shiina K, Matsuda M, Miura D, Shimamura M, Ohyama Y, Yamazoe A, Uchino Y, Kameyama K, Arioka S, Kataoka J, Hisada T, Fujii K, Takahashi S, Kuroiwa M, Rokushima M, Nishiyama M, Tanaka Y, Fuchikami T, Aoki H, Kira S, Koyanagi R, Naito T, Nishiwaki M, Kumagai H, Konda M, Kasahara K, Ohkuma M, Kawasaki H, Sekiguchi Y, Terauchi J. | Microbiome | 10.1186/s40168-021-01048-3 | 2021 | |
| Survival of free-living Acholeplasma in aerated pig manure slurry revealed by (13)C-labeled bacterial biomass probing. | Hanajima D, Aoyagi T, Hori T. | Front Microbiol | 10.3389/fmicb.2015.01206 | 2015 | ||
| Genetics | Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements. | Tourlousse DM, Narita K, Miura T, Ohashi A, Matsuda M, Ohyama Y, Shimamura M, Furukawa M, Kasahara K, Kameyama K, Saito S, Goto M, Shimizu R, Mishima R, Nakayama J, Hosomi K, Kunisawa J, Terauchi J, Sekiguchi Y, Kawasaki H. | Microbiol Spectr | 10.1128/spectrum.01915-21 | 2022 | |
| Enzymology | Cyclopenta[b]benzofuran and Secodammarane Derivatives from the Stems of Aglaia stellatopilosa. | Othman N, Pan L, Mejin M, Voong JC, Chai HB, Pannell CM, Kinghorn AD, Yeo TC. | J Nat Prod | 10.1021/acs.jnatprod.5b00810 | 2016 | |
| Metabolism | Identification and characterization of leucocyclicin Q, a novel cyclic bacteriocin produced by Leuconostoc mesenteroides TK41401. | Masuda Y, Ono H, Kitagawa H, Ito H, Mu F, Sawa N, Zendo T, Sonomoto K. | Appl Environ Microbiol | 10.1128/aem.06348-11 | 2011 | |
| Pathogenicity | Identification and characterization of lactocyclicin Q, a novel cyclic bacteriocin produced by Lactococcus sp. strain QU 12. | Sawa N, Zendo T, Kiyofuji J, Fujita K, Himeno K, Nakayama J, Sonomoto K. | Appl Environ Microbiol | 10.1128/aem.02299-08 | 2009 | |
| Angelica keiskei, an emerging medicinal herb with various bioactive constituents and biological activities. | Kil YS, Pham ST, Seo EK, Jafari M. | Arch Pharm Res | 10.1007/s12272-017-0892-3 | 2017 | ||
| Phylogeny | First cultivation and ecological investigation of a bacterium affiliated with the candidate phylum OP5 from hot springs. | Mori K, Sunamura M, Yanagawa K, Ishibashi J, Miyoshi Y, Iino T, Suzuki K, Urabe T. | Appl Environ Microbiol | 10.1128/aem.01351-08 | 2008 | |
| Analysis of antimicrobial effects of a contactless, indirect cold atmospheric plasma-aerosol method for germ reduction on surfaces: an in vitro and in vivo study. | Schaal T, Schmelz U, Hammerle G, Fuchs R, Schorling T, Kurras S, Koene M, Tischendorf T. | Front Microbiol | 10.3389/fmicb.2025.1668987 | 2025 | ||
| Comprehensive evaluation of the bactericidal and anti-pathogenic efficacy of chemical disinfectants against antibiotic resistant ESKAPE clinical strains. | Mitache MM, Pindaru A, Barbu IC, Talapan D, Surleac M, Sarbu E, Marutescu L, Chifiriuc MC. | BMC Microbiol | 10.1186/s12866-025-04273-0 | 2025 | ||
| Alcohol-based hand rubs can fulfil efficacy requirements of EN 1500 in 15 seconds. | Monch E, Bolten A, Niesalla H, Senges C. | GMS Hyg Infect Control | 10.3205/dgkh000496 | 2024 | ||
| A Label-Free Optical Flow Cytometry Based-Method for Rapid Assay of Disinfectants' Bactericidal Activity. | Pindaru AM, Marutescu L, Popa M, Chifiriuc MC. | Int J Mol Sci | 10.3390/ijms25137158 | 2024 | ||
| Equivalent reduction of Escherichia coli by rinsing hands with cold and warm water. | Kordasiewicz-Stingler R, Reiter M, Kampf G, Gebel J, Ilschner C, Suchomel M. | GMS Hyg Infect Control | 10.3205/dgkh000527 | 2024 | ||
| Notification of bacterial strains made available by the UK National Collection of Type Cultures in 2023. | Turnbull JD, Dicks J, Adkin R, Dickinson A, Kaushal D, Semowo M, NCTC 2023 Depositors Cohort, McGregor H. | Access Microbiol | 10.1099/acmi.0.001015.v3 | 2025 | ||
| The antimicrobial efficacy of copper, cobalt, zinc and silver nanoparticles: alone and in combination. | Raja FNS, Worthington T, Martin RA. | Biomed Mater | 10.1088/1748-605x/acd03f | 2023 | ||
| Label-Free Flow Cytometry: A Powerful Tool to Rapidly and Accurately Assess the Efficacy of Chemical Disinfectants. | Pindaru A, Marutescu LG, Popa M, Lambert C, Chifiriuc MC. | Microorganisms | 10.3390/microorganisms13051156 | 2025 | ||
| A plasmid with the bla CTX-M gene enhances the fitness of Escherichia coli strains under laboratory conditions. | Lopez L, Calderon D, Salinas L, Graham JP, Blount ZD, Trueba G. | Microbiology (Reading) | 10.1099/mic.0.001525 | 2025 | ||
| Digital PCR Validation for Characterization of Quantitative Reference Material of Escherichia coli O157:H7 Genomic DNA. | Tere-Pena CP, Calderon-Ozuna MN, Leguizamon Guerrero JE. | Methods Protoc | 10.3390/mps7060094 | 2024 | ||
| Biologically Active Preparations from the Leaves of Wild Plant Species of the Genus Rubus. | Kucharski L, Cybulska K, Kucharska E, Nowak A, Pelech R, Klimowicz A. | Molecules | 10.3390/molecules27175486 | 2022 | ||
| New approaches to disinfection of thermolabile medical devices using an indirect method with cold atmospheric plasma-aerosol | Schaal T, Schmelz U, Pitten F, Tischendorf T. | Sci Rep | 2025 | |||
| Notification List of Bacterial Strains Made Available by the United Kingdom National Collection of Type Cultures in 2021. | Turnbull JD, Dicks J, Gurung S, McGregor H, NCTC 2021 Depositors Cohort, Alexander S. | Microbiol Resour Announc | 10.1128/mra.00357-22 | 2022 | ||
| Natural Antimicrobial Mixtures Disrupt Attachment and Survival of E. coli and C. jejuni to Non-Organic and Organic Surfaces. | Corcionivoschi N, Balta I, Butucel E, McCleery D, Pet I, Iamandei M, Stef L, Morariu S. | Foods | 10.3390/foods12203863 | 2023 | ||
| Extensively-drug-resistant Klebsiella pneumoniae ST307 outbreak strain from north-eastern Germany does not show increased tolerance to quaternary ammonium compounds and chlorhexidine. | Hornschuh M, Zwicker P, Kramer A, Schaufler K, Heiden SE, Bohnert JA, Becker K, Hubner NO. | J Hosp Infect | 10.1016/j.jhin.2021.01.032 | 2021 | ||
| Structural and Biological Studies of Bioactive Silver(I) Complexes with Coumarin Acid Derivatives. | Wolska A, Drzewiecka-Antonik A, Barboza CA, Struga M, Stefanska J, Rejmak P, Klepka M. | Molecules | 10.3390/molecules29214993 | 2024 | ||
| Bridging Flocculation of a Sterically Stabilized Cationic Latex as a Biosensor for the Detection of Microbial DNA after Amplification via PCR. | Trinh E, Batt LJ, Yue Q, Du R, Jones ST, Fielding LA. | Biomacromolecules | 10.1021/acs.biomac.3c01187 | 2024 | ||
| Do pneumatic tube transport systems transmit potential pathogens? A hygienic risk assessment in a university hospital. | Khaznadar L, Dancer SJ, Petersmann A, Seifert U, Below H, Papke R, Suchomel M, Kohlmann T, Kramer A. | J Hosp Infect | 10.1016/j.jhin.2019.11.009 | 2020 | ||
| The Antimicrobial Efficacy of Hypoxia Mimicking Cobalt Oxide Doped Phosphate-Based Glasses against Clinically Relevant Gram Positive, Gram Negative Bacteria and a Fungal Strain. | Raja FNS, Worthington T, Isaacs MA, Forto Chungong L, Burke B, Addison O, Martin RA. | ACS Biomater Sci Eng | 10.1021/acsbiomaterials.8b01045 | 2019 | ||
| Evaluation of organic load-related efficacy changes in antiseptic solutions used in hospitals. | Sahiner A, Halat E, Yapar EA, Kara BA. | Turk J Med Sci | 10.55730/1300-0144.5379 | 2022 | ||
| Effect of Optimal Alcohol-Based Hand Rub among Nurse Students Compared with Everyday Practice among Random Adults; Can Water-Based Hand Rub Combined with a Hand Dryer Machine Be an Alternative to Remove E. coli Contamination from Hands? | Breidablik HJ, Johannessen L, Andersen JR, Soreide H, Kleiven OT. | Microorganisms | 10.3390/microorganisms11020325 | 2023 | ||
| Development of A Rapid, Low-Cost Portable Detection Assay for Enterococci in Wastewater and Environmental Waters. | Batra AR, Cottam D, Lepesteur M, Dexter C, Zuccala K, Martino C, Khudur L, Daniel V, Ball AS, Soni SK. | Microorganisms | 10.3390/microorganisms11020381 | 2023 | ||
| Pathogenicity | Neutralization efficiency of alcohol based products used for rapid hand disinfection | Chojecka A, Tarka P, Kierzkowska A, Nitsch-Osuch A, Kanecki K. | Rocz Panstw Zakl Hig | 2017 | ||
| AKVANO®: A Novel Lipid Formulation System for Topical Drug Delivery-In Vitro Studies. | Holmback J, Rinwa V, Halthur T, Rinwa P, Carlsson A, Herslof B. | Pharmaceutics | 10.3390/pharmaceutics14040794 | 2022 | ||
| Chlorhexidine and octenidine susceptibility of bacterial isolates from clinical samples in a three-armed cluster randomised decolonisation trial. | Denkel LA, Kramer TS, Schwab F, Golembus J, Wolke S, Gastmeier P, Geffers C. | PLoS One | 10.1371/journal.pone.0278569 | 2022 | ||
| Synergistic Antimicrobial Metal Oxide-Doped Phosphate Glasses; a Potential Strategy to Reduce Antimicrobial Resistance and Host Cell Toxicity. | Raja FNS, Worthington T, de Souza LPL, Hanaei SB, Martin RA. | ACS Biomater Sci Eng | 10.1021/acsbiomaterials.1c00876 | 2022 | ||
| Pathogenicity | The influence of pH and fluid dynamics on the antibacterial efficacy of 45S5 Bioglass. | Begum S, Johnson WE, Worthington T, Martin RA. | Biomed Mater | 10.1088/1748-6041/11/1/015006 | 2016 | |
| Resurfacing receptor binding domain of Colicin N to enhance its cytotoxic effect on human lung cancer cells. | Arunmanee W, Duangkaew M, Taweecheep P, Aphicho K, Lerdvorasap P, Pitchayakorn J, Intasuk C, Jiraratmetacon R, Syamsidi A, Chanvorachote P, Chaotham C, Pornputtapong N. | Comput Struct Biotechnol J | 10.1016/j.csbj.2021.09.008 | 2021 | ||
| Evaluation and comparison of recombinase polymerase amplification coupled with lateral-flow bioassay for Escherichia coli O157:H7 detection using diifeerent genes. | Rani A, Ravindran VB, Surapaneni A, Shahsavari E, Haleyur N, Mantri N, Ball AS. | Sci Rep | 10.1038/s41598-021-81312-6 | 2021 | ||
| Pathogenicity | How long is enough? Identification of product dry-time as a primary driver of alcohol-based hand rub efficacy. | Suchomel M, Leslie RA, Parker AE, Macinga DR. | Antimicrob Resist Infect Control | 10.1186/s13756-018-0357-6 | 2018 | |
| Pathogenicity | Comparison of bactericidal and fungicidal efficacy of antiseptic formulations according to EN 13727 and EN 13624 standards | Sahiner A, Halat E, Algin Yapar E. | Turk J Med Sci | 10.3906/sag-1906-53 | 2019 | |
| Synthesis, Structural Characterization and Biological Activity Evaluation of Novel Cu(II) Complexes with 3-(trifluoromethyl)phenylthiourea Derivatives. | Drzewiecka-Antonik A, Struga M, Glogowska A, Augustynowicz-Kopec E, Dobrzynska K, Chrzanowska A, Wolska A, Rejmak P, Klepka MT, Wrzosek M, Bielenica A. | Int J Mol Sci | 10.3390/ijms232415694 | 2022 | ||
| Pathogenicity | Anti-biofilm effects and characterisation of the hydrogen peroxide activity of a range of Western Australian honeys compared to Manuka and multifloral honeys. | Sindi A, Chawn MVB, Hernandez ME, Green K, Islam MK, Locher C, Hammer K. | Sci Rep | 10.1038/s41598-019-54217-8 | 2019 | |
| Viscosity is an important factor of resistance to alcohol-based disinfectants by pathogens present in mucus. | Hirose R, Nakaya T, Naito Y, Daidoji T, Watanabe Y, Yasuda H, Konishi H, Itoh Y. | Sci Rep | 10.1038/s41598-017-13732-2 | 2017 | ||
| Bactericidal and Virucidal Activity of Povidone-Iodine and Chlorhexidine Gluconate Cleansers in an In Vivo Hand Hygiene Clinical Simulation Study. | Eggers M, Koburger-Janssen T, Ward LS, Newby C, Muller S. | Infect Dis Ther | 10.1007/s40121-018-0202-5 | 2018 | ||
| 3-(5-Nitrofuran-2-yl)prop-2-en-1-one Derivatives, with Potent Antituberculosis Activity, Inhibit A Novel Therapeutic Target, Arylamine N-acetyltransferase, in Mycobacteria. | Agre N, Tawari N, Maitra A, Gupta A, Munshi T, Degani M, Bhakta S. | Antibiotics (Basel) | 10.3390/antibiotics9070368 | 2020 | ||
| Pathogenicity | Reduction of the neutralisation time during antimicrobial activity testing of disinfectants according to European Standards. | Tyski S, Bocian E, Grzybowska W. | Rocz Panstw Zakl Hig | 2013 | ||
| Obtaining and Characterization of the PLA/Chitosan Foams with Antimicrobial Properties Achieved by the Emulsification Combined with the Dissolution of Chitosan by CO2 Saturation. | Mania S, Partyka K, Pilch J, Augustin E, Cieslik M, Ryl J, Jinn JR, Wang YJ, Michalowska A, Tylingo R. | Molecules | 10.3390/molecules24244532 | 2019 | ||
| NSAIDs as a Drug Repurposing Strategy for Biofilm Control. | Leao C, Borges A, Simoes M. | Antibiotics (Basel) | 10.3390/antibiotics9090591 | 2020 | ||
| Spectrum of antibacterial activity and mode of action of a novel tris-stilbene bacteriostatic compound. | Man NYT, Knight DR, Stewart SG, McKinley AJ, Riley TV, Hammer KA. | Sci Rep | 10.1038/s41598-018-25080-w | 2018 | ||
| Plasma-Treated Air and Water-Assessment of Synergistic Antimicrobial Effects for Sanitation of Food Processing Surfaces and Environment. | Schnabel U, Handorf O, Yarova K, Zessin B, Zechlin S, Sydow D, Zellmer E, Stachowiak J, Andrasch M, Below H, Ehlbeck J. | Foods | 10.3390/foods8020055 | 2019 | ||
| Resistance and tolerance to tropodithietic acid, an antimicrobial in aquaculture, is hard to select. | Porsby CH, Webber MA, Nielsen KF, Piddock LJ, Gram L. | Antimicrob Agents Chemother | 10.1128/aac.01222-10 | 2011 | ||
| Pathogenicity | The Impact of Efflux Pump Inhibitors on the Activity of Selected Non-Antibiotic Medicinal Products against Gram-Negative Bacteria. | Laudy AE, Kulinska E, Tyski S. | Molecules | 10.3390/molecules22010114 | 2017 | |
| The Synergistic Microbiological Effects of Industrial Produced Packaging Polyethylene Films Incorporated with Zinc Nanoparticles. | Mania S, Cieslik M, Konzorski M, Swiecikowski P, Nelson A, Banach A, Tylingo R. | Polymers (Basel) | 10.3390/polym12051198 | 2020 | ||
| The Production Possibility of the Antimicrobial Filaments by Co-Extrusion of the PLA Pellet with Chitosan Powder for FDM 3D Printing Technology. | Mania S, Ryl J, Jinn JR, Wang YJ, Michalowska A, Tylingo R. | Polymers (Basel) | 10.3390/polym11111893 | 2019 | ||
| Pathogenicity | The Cytotoxic Effect of Copper (II) Complexes with Halogenated 1,3-Disubstituted Arylthioureas on Cancer and Bacterial Cells. | Chrzanowska A, Drzewiecka-Antonik A, Dobrzynska K, Stefanska J, Pietrzyk P, Struga M, Bielenica A. | Int J Mol Sci | 10.3390/ijms222111415 | 2021 | |
| Pathogenicity | Comparison of two in vivo and two ex vivo tests to assess the antibacterial activity of several antiseptics. | Messager S, Goddard PA, Dettmar PW, Maillard JY. | J Hosp Infect | 10.1016/j.jhin.2004.06.001 | 2004 | |
| Antibacterial activity of selected commercial products for mouth washing and disinfection, assessed in accordance with PN-EN 1040. | Tyski S, Bocian E, Mikucka A, Grzybowska W. | Med Sci Monit | 10.12659/msm.883952 | 2013 | ||
| Treating Polymicrobial Infections in Chronic Diabetic Wounds. | Buch PJ, Chai Y, Goluch ED. | Clin Microbiol Rev | 10.1128/cmr.00091-18 | 2019 | ||
| Pathogenicity | The Influence of Efflux Pump Inhibitors on the Activity of Non-Antibiotic NSAIDS against Gram-Negative Rods. | Laudy AE, Mrowka A, Krajewska J, Tyski S. | PLoS One | 10.1371/journal.pone.0147131 | 2016 | |
| Enzymology | Phage display-derived binders able to distinguish Listeria monocytogenes from other Listeria species. | McIvor MJ, Karoonuthaisiri N, Charlermroj R, Stewart LD, Elliott CT, Grant IR. | PLoS One | 10.1371/journal.pone.0074312 | 2013 | |
| The relative influences of product volume, delivery format and alcohol concentration on dry-time and efficacy of alcohol-based hand rubs. | Macinga DR, Shumaker DJ, Werner HP, Edmonds SL, Leslie RA, Parker AE, Arbogast JW. | BMC Infect Dis | 10.1186/1471-2334-14-511 | 2014 | ||
| Effect of lysozyme or nisin on survival of some bacteria treated with high pressure at subzero temperature. | Malinowska-Panczyk E, Kolodziejska I. | Braz J Microbiol | 10.1590/s1517-83822009000400006 | 2009 | ||
| Absence of mutations in marRAB or soxRS in acrB-overexpressing fluoroquinolone-resistant clinical and veterinary isolates of Escherichia coli. | Webber MA, Piddock LJ. | Antimicrob Agents Chemother | 10.1128/aac.45.5.1550-1552.2001 | 2001 | ||
| Pathogenicity | Frequency and mechanism of resistance to antibacterial action of ZM 240401, (6S)-6-fluoro-shikimic acid. | Ewart CD, Jude DA, Thain JL, Nichols WW. | Antimicrob Agents Chemother | 10.1128/aac.39.1.87 | 1995 | |
| Pathogenicity | Mechanism of action of sparfloxacin against and mechanism of resistance in gram-negative and gram-positive bacteria. | Piddock LJ, Zhu M. | Antimicrob Agents Chemother | 10.1128/aac.35.11.2423 | 1991 | |
| Pathogenicity | Activity of Bay y3118 against quinolone-susceptible and -resistant gram-negative and gram-positive bacteria. | Piddock LJ, Marshall AJ, Jin YF. | Antimicrob Agents Chemother | 10.1128/aac.38.3.422 | 1994 | |
| Pathogenicity | (6S)-6-fluoroshikimic acid, an antibacterial agent acting on the aromatic biosynthetic pathway. | Davies GM, Barrett-Bee KJ, Jude DA, Lehan M, Nichols WW, Pinder PE, Thain JL, Watkins WJ, Wilson RG. | Antimicrob Agents Chemother | 10.1128/aac.38.2.403 | 1994 | |
| Mechanism of action of lomefloxacin. | Piddock LJ, Hall MC, Wise R. | Antimicrob Agents Chemother | 10.1128/aac.34.6.1088 | 1990 | ||
| Pitfalls in efficacy testing--how important is the validation of neutralization of chlorhexidine digluconate? | Reichel M, Heisig P, Kampf G. | Ann Clin Microbiol Antimicrob | 10.1186/1476-0711-7-20 | 2008 | ||
| Pathogenicity | Contributions of individual mechanisms to fluoroquinolone resistance in 36 Escherichia coli strains isolated from humans and animals. | Everett MJ, Jin YF, Ricci V, Piddock LJ. | Antimicrob Agents Chemother | 10.1128/aac.40.10.2380 | 1996 | |
| Bacterial interspersed mosaic elements (BIMEs) are a major source of sequence polymorphism in Escherichia coli intergenic regions including specific associations with a new insertion sequence. | Bachellier S, Clement JM, Hofnung M, Gilson E. | Genetics | 10.1093/genetics/145.3.551 | 1997 | ||
| Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays. | Liu WT, Guo H, Wu JH. | Appl Environ Microbiol | 10.1128/aem.01468-06 | 2007 | ||
| Metabolism | Metabolic activity of pathogenic bacteria during semicontinuous anaerobic digestion. | Kearney TE, Larkin MJ, Levett PN. | Appl Environ Microbiol | 10.1128/aem.60.10.3647-3652.1994 | 1994 | |
| Phylogeny | Aceticlastic and NaCl-requiring methanogen "Methanosaeta pelagica" sp. nov., isolated from marine tidal flat sediment. | Mori K, Iino T, Suzuki K, Yamaguchi K, Kamagata Y. | Appl Environ Microbiol | 10.1128/aem.07484-11 | 2012 |
| #4259 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11250 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41793 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #118690 | Collection of Institut Pasteur ; Curators of the CIP; CIP 54.117 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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