Escherichia coli C90 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe genome sequence Bacteria| @ref 20215 |
Last LPSN update
2026-02-09 11:33:05 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| 39443 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 39443 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 39443 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 39443 | 17234 ChEBI | glucose | + | fermentation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | + | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 39443 | 17716 ChEBI | lactose | + | fermentation | |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 39443 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 39443 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 39443 | 17632 ChEBI | nitrate | + | reduction | |
| 39443 | 16301 ChEBI | nitrite | + | reduction | |
| 68371 | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 39443 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 39443 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 39443 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 39443 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 39443 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 39443 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 39443 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 39443 | ornithine decarboxylase | - | 4.1.1.17 | |
| 39443 | oxidase | - | ||
| 39443 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 39443 | tryptophan deaminase | - | ||
| 39443 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39443 | not determinedn.d. | + | - | +/- | + | + | + | - | - | - | + | + | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | - | + | + | + | + | + | - | - | + | - | - | - | - | - | - | - | - | + | - | - | + | +/- | + |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | PDT000619880.1 assembly for Escherichia coli ECOR-48/D | contig | GCA_012531335   | 562 | 26.6 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genomic Insights of Antibiotic-Resistant Escherichia coli Isolated from Intensive Pig Farming in South Africa Using 'Farm-to-Fork' Approach. | Abdalla SE, Bester LA, Abia ALK, Allam M, Ismail A, Essack SY, Amoako DG. | Antibiotics (Basel) | 10.3390/antibiotics14050446 | 2025 | | |
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| Metabolism | The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli. | Hogins J, Xuan Z, Zimmern PE, Reitzer L. | Microbiol Spectr | 10.1128/spectrum.02085-23 | 2023 | |
| Bacteriophage Cocktail and Microcin-Producing Probiotic Escherichia coli Protect Mice Against Gut Colonization With Multidrug-Resistant Escherichia coli Sequence Type 131. | Porter SB, Johnston BD, Kisiela D, Clabots C, Sokurenko EV, Johnson JR. | Front Microbiol | 10.3389/fmicb.2022.887799 | 2022 | | |
| Vesicle-enriched secretomes alter bacterial competitive abilities and are drivers of evolution in microbial communities. | Warsi OM, Gedda L, Edwards K, Andersson DI. | FEMS Microbiol Ecol | 10.1093/femsec/fiad141 | 2023 | | |
| Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli. | Sutterlin S, Bray JE, Maiden MCJ, Tano E. | PLoS One | 10.1371/journal.pone.0233315 | 2020 | | |
| Natural DNA uptake by Escherichia coli. | Sinha S, Redfield RJ. | PLoS One | 10.1371/journal.pone.0035620 | 2012 | | |
| Phylogeny | Molecular characterization and antimicrobial susceptibility testing of Escherichia coli isolates from patients with urinary tract infections in 20 Chinese hospitals. | Cao X, Cavaco LM, Lv Y, Li Y, Zheng B, Wang P, Hasman H, Liu Y, Aarestrup FM. | J Clin Microbiol | 10.1128/jcm.02503-10 | 2011 | |
| Mutator natural Escherichia coli isolates have an unusual virulence phenotype. | Picard B, Duriez P, Gouriou S, Matic I, Denamur E, Taddei F. | Infect Immun | 10.1128/iai.69.1.9-14.2001 | 2001 | | |
| Enzymology | Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli. | Hill J, Beriwal S, Chandra I, Paul VK, Kapil A, Singh T, Wadowsky RM, Singh V, Goyal A, Jahnukainen T, Johnson JR, Tarr PI, Vats A. | J Clin Microbiol | 10.1128/jcm.00152-08 | 2008 | |
| Pathogenicity | Natural antibiotic resistance of bacteria isolated from larvae of the oil fly, Helaeomyia petrolei. | Kadavy DR, Hornby JM, Haverkost T, Nickerson KW. | Appl Environ Microbiol | 10.1128/aem.66.11.4615-4619.2000 | 2000 | |
| Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. | Boyd EF, Hartl DL. | J Bacteriol | 10.1128/jb.180.5.1159-1165.1998 | 1998 | | |
| The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. | Ren CP, Beatson SA, Parkhill J, Pallen MJ. | J Bacteriol | 10.1128/jb.187.4.1430-1440.2005 | 2005 | | |
| Metabolism | Osmoregulatory systems of Escherichia coli: identification of betaine-carnitine-choline transporter family member BetU and distributions of betU and trkG among pathogenic and nonpathogenic isolates. | Ly A, Henderson J, Lu A, Culham DE, Wood JM. | J Bacteriol | 10.1128/jb.186.2.296-306.2004 | 2004 | |
| The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. | Ren CP, Chaudhuri RR, Fivian A, Bailey CM, Antonio M, Barnes WM, Pallen MJ. | J Bacteriol | 10.1128/jb.186.11.3547-3560.2004 | 2004 | | |
| Correlation of Rhs elements with Escherichia coli population structure. | Hill CW, Feulner G, Brody MS, Zhao S, Sadosky AB, Sandt CH. | Genetics | 10.1093/genetics/141.1.15 | 1995 | | |
| Molecular evolution of the Escherichia coli chromosome. IV. Sequence comparisons. | Milkman R, Bridges MM. | Genetics | 10.1093/genetics/133.3.455 | 1993 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive138308.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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