Name: Escherichia coli CCUG 11316
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 142179

Type strain:

Species: Escherichia coli

Culture col. no.: CCUG 11316, NCDC Bi8337-41, ATCC 23506, NCTC 9010

NCBI tax ID(s): 562 (species)

SI-ID 44679

ATCC 23506, CCUG 11316, NCTC 9010, CECT 4537, BCRC 15878, CCRC 15878, CNCTC 6839

Other strains from Escherichia coli

Section

Escherichia coli CCUG 11316 is a motile bacterium that was isolated from Human peritonitis.

motile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia coli**
	Full Scientific Name (LPSN)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Bacillus coli"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #69480]	Motility	yes Confidence in %97.115

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.717

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #45436]	Sample type/isolated from	Human peritonitis
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Abdomen
#Infection	#Inflammation	-
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia coli NCTC9010	GCA_900449635	contig	GenBank	562 tax ID	*
[Ref.: #66792]	Escherichia coli O10:K5(L):H4 str. ATCC 23506	GCA_000333175	contig	GenBank	1246623 tax ID	*
[Ref.: #66792]	Escherichia coli O10:K5(L):H4 str. ATCC 23506	1246623.3	wgs	PATRIC	1246623 tax ID	*
[Ref.: #66792]	Escherichia coli strain NCTC9010	562.34269	wgs	PATRIC	562 tax ID	*
[Ref.: #66792]	Escherichia coli O10:K5(L):H4, ATCC 23506	2541047595	draft	JGI IMG/M	1246623 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli strain NCTC9010 PATRIC: 562.34269
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli O10:K5(L):H4 str. ATCC 23506 PATRIC: 1246623.3
[Ref.: #69480]	motile	yes	72.036	no
[Ref.: #69480]	gram-positive	no	98.353	no
[Ref.: #69480]	anaerobic	no	95.165	no
[Ref.: #69480]	aerobic	yes	86.957	no
[Ref.: #69480]	halophile	no	90.909	no
[Ref.: #69480]	spore-forming	no	94.308	no
[Ref.: #69480]	thermophile	no	99.164	no
[Ref.: #69480]	glucose-util	yes	93.973	no
[Ref.: #69480]	flagellated	no	82.24	no
[Ref.: #69480]	glucose-ferment	yes	92.15	no

Availability in culture collections External links

[Ref.: #45436]

Culture collection no.

CCUG 11316, NCDC Bi8337-41, ATCC 23506, NCTC 9010

[Ref.: #97723]

SI-ID 44679

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45436 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11316

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#97723

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44679.1 )

* These data were automatically processed and therefore are not curated

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Escherichia coli strain NCTC9010

Escherichia coli O10:K5(L):H4 str. ATCC 23506

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