Escherichia coli B1409-C1 is a facultative anaerobe, Gram-negative, motile prokaryote that was isolated from Human stool,patient with haemolytic uremic syndrom.
Gram-negative motile rod-shaped facultative anaerobe genome sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | |
|---|---|---|---|---|
| 118358 | CIP Medium 72 | Medium recipe at CIP | ||
| 118358 | CIP Medium 3 | Medium recipe at CIP |
| 118358 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 118358 | 16947 ChEBI | citrate | - | carbon source | |
| 118358 | 4853 ChEBI | esculin | - | hydrolysis | |
| 118358 | 17234 ChEBI | glucose | + | fermentation | |
| 118358 | 17234 ChEBI | glucose | + | degradation | |
| 118358 | 17716 ChEBI | lactose | + | fermentation | |
| 118358 | 15792 ChEBI | malonate | - | assimilation | |
| 118358 | 29864 ChEBI | mannitol | + | fermentation | |
| 118358 | 17632 ChEBI | nitrate | + | reduction | |
| 118358 | 16301 ChEBI | nitrite | + | reduction | |
| 118358 | 132112 ChEBI | sodium thiosulfate | - | builds gas from |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 118358 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118358 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118358 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118358 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118358 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118358 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118358 | ornithine decarboxylase | + | 4.1.1.17 | |
| 118358 | oxidase | - | ||
| 118358 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118358 | tryptophan deaminase | - | ||
| 118358 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 118358 | 3 | Risk group (French classification) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 71.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 64.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 74.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 72.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.48 | yes |
| 125438 | aerobic | aerobicⓘ | no | 68.48 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 75.86 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| UV inactivation, liquid-holding recovery, and photoreactivation of Escherichia coli O157 and other pathogenic Escherichia coli strains in water. | Sommer R, Lhotsky M, Haider T, Cabaj A. | J Food Prot | 10.4315/0362-028x-63.8.1015 | 2000 | ||
| Genetics | Effects of UVC Treatment on Biofilms of Escherichia coli Strains Formed at Different Temperatures and Maturation Periods. | Kyoung M, Lee JI, Kim SS. | Foods | 10.3390/foods14173091 | 2025 | |
| Mechanisms of Polymyxin Resistance in Acid-Adapted Enteroinvasive Escherichia coli NCCP 13719 Revealed by Transcriptomics. | Hwang D, Kim HJ. | Microorganisms | 10.3390/microorganisms12122549 | 2024 | ||
| Effects of Electron Beam Irradiation on the Storage Stability and Quality Characteristics of Chicken and Duck Meat. | Kang KM, Kim HY. | Foods | 10.3390/foods14223867 | 2025 | ||
| A Dual-Recognition Electrochemical Sensor Using Bacteria-Imprinted Polymer and Concanavalin A for Sensitive and Selective Detection of Escherichia coli O157:H7. | Niu X, Ma Y, Li H, Sun S, Shi L, Yan J, Luan D, Zhao Y, Bian X. | Foods | 10.3390/foods14071099 | 2025 | ||
| Potential Future Applications of Postbiotics in the Context of Ensuring Food Safety and Human Health Improvement. | Tomicic Z, Saric L, Tomicic R. | Antibiotics (Basel) | 10.3390/antibiotics14070674 | 2025 | ||
| Inactivation Efficacy of Combination Treatment of Propyl Gallate and UVA LED for Escherichia coli O157:H7 in Apple Juice | Cho Y, Kang D, Kim D. | Journal of food science. | 2025 | |||
| Probiotic-Mediated Biosynthesis of Silver Nanoparticles and Their Antibacterial Applications against Pathogenic Strains of Escherichia coli O157:H7. | Wang X, Lee SY, Akter S, Huq MA. | Polymers (Basel) | 10.3390/polym14091834 | 2022 | ||
| Optimizing postbiotic production through solid-state fermentation with Bacillus amyloliquefaciens J and Lactiplantibacillus plantarum SN4 enhances antibacterial, antioxidant, and anti-inflammatory activities. | Tong Y, Guo H, Abbas Z, Zhang J, Wang J, Cheng Q, Peng S, Yang T, Bai T, Zhou Y, Li J, Wei X, Si D, Zhang R. | Front Microbiol | 10.3389/fmicb.2023.1229952 | 2023 | ||
| Genetics | Bacteriophage cocktail LEC2-LEC10 for broad-spectrum control of pathogenic and uncharacterized Escherichia coli in fresh produce | Kim E, Ryu S, Lim J. | Front Microbiol | 2025 | ||
| Transcriptome | Transcriptome changes and polymyxin resistance of acid-adapted Escherichia coli O157:H7 ATCC 43889. | Hwang D, Kim SM, Kim HJ. | Gut Pathog | 10.1186/s13099-020-00390-5 | 2020 | |
| An Integrated PMA Pretreatment Instrument for Simultaneous Quantitative Detection of Vibrio parahaemolyticus and Vibrio cholerae in Aquatic Products. | Qin Y, Xiong R, Zhao Y, Zhang Z, Yin Y. | Foods | 10.3390/foods14132166 | 2025 | ||
| Identification of amino acid residue in the Cronobacter sakazakii LamB responsible for the receptor compatibility of polyvalent coliphage CSP1. | Kim M, Kim M, Ryu S. | J Virol | 10.1128/jvi.00676-24 | 2024 | ||
| Biosynthesis and health promoting traits of green synthesized cobalt oxide nanoparticles. | Moawad R, Abdallah Y, Mohany M, Al-Rejaie SS, Djurasevic S, Ramadan MF, Mousa AB. | Sci Rep | 10.1038/s41598-024-82679-y | 2025 | ||
| A Novel Dual Bacteria-Imprinted Polymer Sensor for Highly Selective and Rapid Detection of Pathogenic Bacteria. | Xu X, Lin X, Wang L, Ma Y, Sun T, Bian X. | Biosensors (Basel) | 10.3390/bios13090868 | 2023 | ||
| Acid adaptation increased the resistance of Escherichia coli O157:H7 in bok choy (Brassica rapa subsp. chinensis) juice to high-pressure processing. | Koo A, Ghate V, Zhou W. | Appl Environ Microbiol | 10.1128/aem.00602-23 | 2023 | ||
| Upconversion Fluorescence Nanoprobe-Based FRET for the Sensitive Determination of Shigella. | Chen M, Yan Z, Han L, Zhou D, Wang Y, Pan L, Tu K. | Biosensors (Basel) | 10.3390/bios12100795 | 2022 | ||
| Treatment of Clinically Important Bacteria With Cold Atmospheric Plasma. | Ding R, Song J, Huang X, Tan L, Rao X, Yang Y. | Microb Biotechnol | 10.1111/1751-7915.70219 | 2025 | ||
| Application of sodium alginate-based edible coating with citric acid to improve the safety and quality of fresh-cut melon (Cucumis melo L.) during cold storage. | Song H, Jang AR, Lee S, Lee SY. | Food Sci Biotechnol | 10.1007/s10068-023-01475-y | 2024 | ||
| Phytochemicals Controlling Enterohemorrhagic Escherichia coli (EHEC) Virulence-Current Knowledge of Their Mechanisms of Action. | Strzelecki P, Karczewska M, Szalewska-Palasz A, Nowicki D. | Int J Mol Sci | 10.3390/ijms26010381 | 2025 | ||
| Antioxidant capacity of small black soymilk fermented with ROS-resistant probiotics. | Lim ES. | Food Sci Biotechnol | 10.1007/s10068-024-01685-y | 2025 | ||
| Genetics | Alteration of a Shiga toxin-encoding phage associated with a change in toxin production level and disease severity in Escherichia coli. | Miyata T, Taniguchi I, Nakamura K, Gotoh Y, Yoshimura D, Itoh T, Hirai S, Yokoyama E, Ohnishi M, Iyoda S, Ogura Y, Hayashi T. | Microb Genom | 10.1099/mgen.0.000935 | 2023 | |
| Caprylic acid and nonanoic acid upregulate endogenous host defense peptides to enhance intestinal epithelial immunological barrier function via histone deacetylase inhibition. | Wang J, Huang N, Xiong J, Wei H, Jiang S, Peng J. | Int Immunopharmacol | 10.1016/j.intimp.2018.10.022 | 2018 | ||
| Development of a Dual Mode UCNPs-MB Biosensor in Combination with PCR for Sensitive Detection of Salmonella. | Han L, Chen M, Song Y, Yan Z, Zhou D, Pan L, Tu K. | Biosensors (Basel) | 10.3390/bios13040475 | 2023 | ||
| A Comprehensive Analysis of the UVC LEDs' Applications and Decontamination Capability. | Nicolau T, Gomes Filho N, Padrao J, Zille A. | Materials (Basel) | 10.3390/ma15082854 | 2022 | ||
| Mechanisms of Plasma Ozone and UV-C Sterilization of SARS-CoV-2 Explored through Atomic Force Microscopy. | Bae J, Bednar P, Zhu R, Bong C, Bak MS, Stainer S, Kim K, Lee J, Yoon C, Lee Y, Ojowa OT, Lehner M, Hinterdorfer P, Ruzek D, Park S, Oh YJ. | ACS Appl Mater Interfaces | 10.1021/acsami.4c11057 | 2024 | ||
| Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp. | Lee JI, Kim SS, Kang DH. | Sci Rep | 10.1038/s41598-018-37060-1 | 2019 | ||
| Stress | Influence of Low-Shear Modeled Microgravity on Heat Resistance, Membrane Fatty Acid Composition, and Heat Stress-Related Gene Expression in Escherichia coli O157:H7 ATCC 35150, ATCC 43889, ATCC 43890, and ATCC 43895. | Kim HW, Rhee MS. | Appl Environ Microbiol | 10.1128/aem.00050-16 | 2016 | |
| Characterization of mcr-1-Harboring Plasmids from Pan Drug-Resistant Escherichia coli Strains Isolated from Retail Raw Chicken in South Korea. | Kim J, Hwang BK, Choi H, Wang Y, Choi SH, Ryu S, Jeon B. | Microorganisms | 10.3390/microorganisms7090344 | 2019 | ||
| Inhibiting the Growth of Escherichia coli O157:H7 in Beef, Pork, and Chicken Meat using a Bacteriophage. | Seo J, Seo DJ, Oh H, Jeon SB, Oh MH, Choi C. | Korean J Food Sci Anim Resour | 10.5851/kosfa.2016.36.2.186 | 2016 | ||
| Assessment of the Antimicrobial Potentiality and Functionality of Lactobacillus plantarum Strains Isolated from the Conventional Inner Mongolian Fermented Cheese Against Foodborne Pathogens. | Muhammad Z, Ramzan R, Abdelazez A, Amjad A, Afzaal M, Zhang S, Pan S. | Pathogens | 10.3390/pathogens8020071 | 2019 | ||
| Quercetin mediated antimicrobial photodynamic treatment using blue light on Escherichia coli O157:H7 and Listeria monocytogenes. | Lee IH, Kim SH, Kang DH. | Curr Res Food Sci | 10.1016/j.crfs.2022.100428 | 2023 | ||
| Metabolism | Sodium Decanoate Improves Intestinal Epithelial Barrier and Antioxidation via Activating G Protein-Coupled Receptor-43. | Zhao J, Hu J, Ma X. | Nutrients | 10.3390/nu13082756 | 2021 | |
| Asterias pectinifera-Derived Collagen Peptides Mixed with Halocynthia roretzi Extracts Exhibit Anti-Photoaging Activities during Exposure to UV Irradiation, and Antibacterial Properties. | Oh SJ, Park JY, Won B, Oh YT, Yang SC, Shin OS. | J Microbiol Biotechnol | 10.4014/jmb.2207.07018 | 2022 | ||
| Gaseous ozone treatment of baby spinach within the existing production chain for inactivation of Escherichia coli O157:H7 | Shynkaryk MV, Pyatkovskyy TI, Yousef AE, Sastry SK. | Journal of food engineering. | 10.1016/j.jfoodeng.2016.06.025 | 2016 | ||
| Control Measurements of Escherichia coli Biofilm: A Review. | Zhou F, Wang D, Hu J, Zhang Y, Tan BK, Lin S. | Foods | 10.3390/foods11162469 | 2022 | ||
| Novel Dietary Approach with Probiotics, Prebiotics, and Synbiotics to Mitigate Antimicrobial Resistance and Subsequent Out Marketplace of Antimicrobial Agents: A Review. | Habteweld HA, Asfaw T. | Infect Drug Resist | 10.2147/idr.s413416 | 2023 | ||
| Genetic Diversity and Virulence Profiling of Multi-Drug Resistant Escherichia coli of Human, Animal, and Environmental Origins. | Yar A, Choudary MA, Rehman A, Hussain A, Elahi A, Ur Rehman F, Waqar AB, Alshammari A, Alharbi M, Nisar MA, Khurshid M, Khan Z. | Antibiotics (Basel) | 10.3390/antibiotics11081061 | 2022 | ||
| UV Tolerance of Spoilage Microorganisms and Acid-Shocked and Acid-Adapted Escherichia coli in Apple Juice Treated with a Commercial UV Juice-Processing Unit. | Usaga J, Padilla-Zakour OI, Worobo RW. | J Food Prot | 10.4315/0362-028x.jfp-15-080 | 2016 | ||
| Pathogenicity | A Comprehensive Review on Shiga Toxin Subtypes and Their Niche-Related Distribution Characteristics in Shiga-Toxin-Producing E. coli and Other Bacterial Hosts. | Wang X, Yu D, Chui L, Zhou T, Feng Y, Cao Y, Zhi S. | Microorganisms | 10.3390/microorganisms12040687 | 2024 | |
| Microgravity alters the physiological characteristics of Escherichia coli O157:H7 ATCC 35150, ATCC 43889, and ATCC 43895 under different nutrient conditions. | Kim HW, Matin A, Rhee MS. | Appl Environ Microbiol | 10.1128/aem.04037-13 | 2014 | ||
| Effect of Biltong Dried Beef Processing on the Reduction of Listeria monocytogenes, E. coli O157:H7, and Staphylococcus aureus, and the Contribution of the Major Marinade Components. | Gavai K, Karolenko C, Muriana PM. | Microorganisms | 10.3390/microorganisms10071308 | 2022 | ||
| Metabolism | In vitro assessment of the antimicrobial potentials of Lactobacillus helveticus strains isolated from traditional cheese in Sinkiang China against food-borne pathogens. | Bian X, Evivie SE, Muhammad Z, Luo GW, Liang HZ, Wang NN, Huo GC. | Food Funct | 10.1039/c5fo01041a | 2016 | |
| Potential Impact of Combined Inhibition by Bacteriocins and Chemical Substances of Foodborne Pathogenic and Spoilage Bacteria: A Review. | Yu W, Guo J, Liu Y, Xue X, Wang X, Wei L, Ma J. | Foods | 10.3390/foods12163128 | 2023 | ||
| Pathogenicity | Nanocapsular dispersion of thymol for enhanced dispersibility and increased antimicrobial effectiveness against Escherichia coli O157:H7 and Listeria monocytogenes in model food systems. | Shah B, Davidson PM, Zhong Q. | Appl Environ Microbiol | 10.1128/aem.02225-12 | 2012 | |
| Enzymology | Viable but Nonculturable Escherichia coli O157:H7 and Salmonella enterica in Fresh Produce: Rapid Determination by Loop-Mediated Isothermal Amplification Coupled with a Propidium Monoazide Treatment. | Han L, Wang K, Ma L, Delaquis P, Bach S, Feng J, Lu X. | Appl Environ Microbiol | 10.1128/aem.02566-19 | 2020 | |
| Preparation of silver-coated cotton fabrics using silver carbamate via thermal reduction and their properties. | Kwak WG, Oh MH, Gong MS. | Carbohydr Polym | 10.1016/j.carbpol.2014.08.070 | 2015 | ||
| Antibacterial Activity of Caffeic Acid Combined with UV-A Light against Escherichia coli O157:H7, Salmonella enterica Serovar Typhimurium, and Listeria monocytogenes. | Park MY, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00631-21 | 2021 | ||
| Resistance of pathogenic biofilms on glass fiber filters formed under different conditions. | Song H, Lee SY. | Food Sci Biotechnol | 10.1007/s10068-020-00773-z | 2020 | ||
| Non-destructive processing of silver containing glass ceramic antibacterial coating on polymeric surgical mesh surfaces. | Zareei A, Kasi V, Thornton A, Rivera UH, Sawale M, Maruthamuthu MK, He Z, Nguyen J, Wang H, Mishra DK, Rahimi R. | Nanoscale | 10.1039/d3nr01317k | 2023 | ||
| Antibacterial mechanism of the action of Enteromorpha linza L. essential oil against Escherichia coli and Salmonella Typhimurium. | Patra JK, Das G, Baek KH. | Bot Stud | 10.1186/s40529-015-0093-7 | 2015 | ||
| Chemical Composition Analysis and Antibacterial Mode of Action of Taxus Cuspidata Leaf Essential Oil against Foodborne Pathogens | Bajpai VK, Sharma A, Moon B, Baek K. | Journal of food safety. | 10.1111/jfs.12089 | 2014 | ||
| Pathogenicity | Nanodispersed eugenol has improved antimicrobial activity against Escherichia coli O157:H7 and Listeria monocytogenes in bovine milk. | Shah B, Davidson PM, Zhong Q. | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2012.11.020 | 2013 | |
| Pathogenicity | The combined effect of high pressure processing and dimethyl dicarbonate to inactivate foodborne pathogens in apple juice. | Petrus RR, Churey JJ, Humiston GA, Cheng RM, Worobo RW. | Braz J Microbiol | 10.1007/s42770-019-00145-8 | 2020 | |
| Biotechnology | Antimicrobial activity of nanodispersed thymol in tryptic soy broth. | Shah B, Davidson PM, Zhong Q. | J Food Prot | 10.4315/0362-028x.jfp-12-354 | 2013 | |
| Phylogeny | Assessment of Listeria monocytogenes Surface Proteins Identified from Proteomics Analysis for Use as Diagnostic Biomarkers. | Zhang CXY, Brooks BW, Huang H, Lin M. | Appl Environ Microbiol | 10.1128/aem.00035-22 | 2022 | |
| Study on the presence of resistant diarrheagenic pathotypes in Escherichia coli isolated from patients with urinary tract infection. | Derakhshan S, Farhadifar F, Roshani D, Ahmadi A, Haghi F. | Gastroenterol Hepatol Bed Bench | 2019 | |||
| Enzymology | Pentaplex PCR assay for detection of hemorrhagic bacteria from stool samples. | Al-Talib H, Latif B, Mohd-Zain Z. | J Clin Microbiol | 10.1128/jcm.00891-14 | 2014 | |
| Development of a multiplex loop-mediated isothermal amplification assay to detect shiga toxin-producing Escherichia coli in cattle. | Dong HJ, Cho AR, Hahn TW, Cho S. | J Vet Sci | 10.4142/jvs.2014.15.2.317 | 2014 | ||
| Numerical analysis of rectangular type batch ohmic heater to identify the cold point. | Choi W, Kim SS, Park SH, Ahn JB, Kang DH. | Food Sci Nutr | 10.1002/fsn3.1353 | 2020 | ||
| The Role of Essential Oils against Pathogenic Escherichia coli in Food Products. | Munekata PES, Pateiro M, Rodriguez-Lazaro D, Dominguez R, Zhong J, Lorenzo JM. | Microorganisms | 10.3390/microorganisms8060924 | 2020 | ||
| Antibacterial activities of a cinnamon essential oil with cetylpyridinium chloride emulsion against Escherichia coli O157:H7 and Salmonella Typhimurium in basil leaves. | Park JB, Kang JH, Song KB. | Food Sci Biotechnol | 10.1007/s10068-017-0241-9 | 2018 | ||
| Antimicrobial activity of gelatin films based on duck feet containing cinnamon leaf oil and their applications in packaging of cherry tomatoes. | Yang SY, Lee KY, Beak SE, Kim H, Song KB. | Food Sci Biotechnol | 10.1007/s10068-017-0175-2 | 2017 | ||
| Enzymology | The Antimicrobial Potential of Bacteria Isolated from Honey Samples Produced in the Apiaries Located in Pomeranian Voivodeship in Northern Poland. | Pajor M, Worobo RW, Milewski S, Szweda P. | Int J Environ Res Public Health | 10.3390/ijerph15092002 | 2018 | |
| Decontamination Effect of the Spindle and 222-Nanometer Krypton-Chlorine Excimer Lamp Combination against Pathogens on Apples (Malus domestica Borkh.) and Bell Peppers (Capsicum annuum L.). | Kang JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00006-19 | 2019 | ||
| Pathogenicity | Metal ions, not metal-catalyzed oxidative stress, cause clay leachate antibacterial activity. | Otto CC, Koehl JL, Solanky D, Haydel SE. | PLoS One | 10.1371/journal.pone.0115172 | 2014 | |
| Combined treatments of chestnut shell extract, fumaric acid, and mild heat to inactivate foodborne pathogens inoculated on beetroot (Beta vulgaris L.) leaves. | Park SM, Kang JH, Son HJ, Oh DH, Min SC, Song KB. | Food Sci Biotechnol | 10.1007/s10068-016-0193-5 | 2016 | ||
| Insights into Emergence of Antibiotic Resistance in Acid-Adapted Enterohaemorrhagic Escherichia coli. | Sheikh SW, Ali A, Ahsan A, Shakoor S, Shang F, Xue T. | Antibiotics (Basel) | 10.3390/antibiotics10050522 | 2021 | ||
| UVC LED Irradiation Effectively Inactivates Aerosolized Viruses, Bacteria, and Fungi in a Chamber-Type Air Disinfection System. | Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00944-18 | 2018 | ||
| Isolation of Enteropathogenic Escherichia coli from lettuce samples in Tehran. | Mazaheri S, Salmanzadeh-Ahrabi S, Falsafi T, Aslani MM. | Gastroenterol Hepatol Bed Bench | 2014 | |||
| Metabolism | Phytic Acid and Sodium Chloride Show Marked Synergistic Bactericidal Effects against Nonadapted and Acid-Adapted Escherichia coli O157:H7 Strains. | Kim NH, Rhee MS. | Appl Environ Microbiol | 10.1128/aem.03307-15 | 2016 | |
| Metabolism | Increased Resistance of Salmonella enterica Serovar Typhimurium and Escherichia coli O157:H7 to 222-Nanometer Krypton-Chlorine Excilamp Treatment by Acid Adaptation. | Kang JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.02221-18 | 2019 | |
| Characterization of Ecklonia cava Alginate Films Containing Cinnamon Essential Oils. | Baek SK, Kim S, Song KB. | Int J Mol Sci | 10.3390/ijms19113545 | 2018 | ||
| Genetics | Comparative Pathogenomics of Escherichia coli: Polyvalent Vaccine Target Identification through Virulome Analysis. | Clark JR, Maresso AM. | Infect Immun | 10.1128/iai.00115-21 | 2021 | |
| Spectrum of antibacterial activity and mode of action of a novel tris-stilbene bacteriostatic compound. | Man NYT, Knight DR, Stewart SG, McKinley AJ, Riley TV, Hammer KA. | Sci Rep | 10.1038/s41598-018-25080-w | 2018 | ||
| Pathogenicity | Inactivation of different strains of Escherichia coli O157:H7 in various apple ciders treated with dimethyl dicarbonate (DMDC) and sulfur dioxide (SO2) as an alternative method. | Basaran-Akgul N, Churey JJ, Basaran P, Worobo RW. | Food Microbiol | 10.1016/j.fm.2008.07.011 | 2009 | |
| A Comparison Study of Quality Attributes of Ground Beef and Veal Patties and Thermal Inactivation of Escherichia coli O157:H7 after Double Pan-Broiling Under Dynamic Conditions. | Li K, McKeith AG, Shen C, McKeith R. | Foods | 10.3390/foods7010001 | 2017 | ||
| Biotechnology | Growth and enrichment medium for detection and isolation of Shiga toxin-producing Escherichia coli in cattle feces. | Hussein HS, Bollinger LM, Hall MR. | J Food Prot | 10.4315/0362-028x-71.5.927 | 2008 | |
| Isolation of Shiga toxin-producing Escherichia coli from raw milk in Kermanshah, Iran. | Mohammadi P, Abiri R, Rezaei M, Salmanzadeh-Ahrabi S. | Iran J Microbiol | 2013 | |||
| Hydrophilic and lipophilic characteristics of non-fatty acid moieties: significant factors affecting antibacterial activity of lauric acid esters. | Park KM, Lee SJ, Yu H, Park JY, Jung HS, Kim K, Lee CJ, Chang PS. | Food Sci Biotechnol | 10.1007/s10068-018-0353-x | 2018 | ||
| Shiga toxin-producing Escherichia coli isolated from lettuce samples in tehran, iran. | Mazaheri S, Salmanzadeh Ahrabi S, Aslani MM. | Jundishapur J Microbiol | 10.5812/jjm.12346 | 2014 | ||
| Biotechnology | Comparison of conventional PCR, multiplex PCR, and loop-mediated isothermal amplification assays for rapid detection of Arcobacter species. | Wang X, Seo DJ, Lee MH, Choi C. | J Clin Microbiol | 10.1128/jcm.02883-13 | 2014 | |
| Enzymology | Influence of apple cultivars on inactivation of different strains of Escherichia coli O157:H7 in apple cider by UV irradiation. | Basaran N, Quintero-Ramos A, Moake MM, Churey JJ, Worobo RW. | Appl Environ Microbiol | 10.1128/aem.70.10.6061-6065.2004 | 2004 | |
| The microcosm mediates the persistence of shiga toxin-producing Escherichia coli in freshwater ecosystems. | Mauro SA, Opalko H, Lindsay K, Colon MP, Koudelka GB. | Appl Environ Microbiol | 10.1128/aem.01281-13 | 2013 | ||
| Investigation of optimum ohmic heating conditions for inactivation of Escherichia coli O157:H7, Salmonella enterica serovar Typhimurium, and Listeria monocytogenes in apple juice. | Park IK, Ha JW, Kang DH. | BMC Microbiol | 10.1186/s12866-017-1029-z | 2017 | ||
| Phylogeny | Detection and characterization of diarrheagenic Escherichia coli from young children in Hanoi, Vietnam. | Nguyen TV, Le Van P, Le Huy C, Gia KN, Weintraub A. | J Clin Microbiol | 10.1128/jcm.43.2.755-760.2005 | 2005 | |
| Stress | Influence of acid adaptation on the tolerance of Escherichia coli O157:H7 to some subsequent stresses. | Cheng HY, Yang HY, Chou CC. | J Food Prot | 10.4315/0362-028x-65.2.260 | 2002 | |
| Enzymology | Genotypic characterization of Escherichia coli O157:H7 isolates from different sources in the North-West Province, South Africa, using enterobacterial repetitive intergenic consensus PCR analysis. | Ateba CN, Mbewe M. | Int J Mol Sci | 10.3390/ijms15069735 | 2014 | |
| Enzymology | Improved selective and differential medium for isolation of Escherichia coli O157:H7. | Park SH, Ryu S, Kang DH. | J Clin Microbiol | 10.1128/jcm.01359-10 | 2011 | |
| Phylogeny | Development of an allele-specific PCR assay for simultaneous sero-typing of avian pathogenic Escherichia coli predominant O1, O2, O18 and O78 strains. | Wang S, Meng Q, Dai J, Han X, Han Y, Ding C, Liu H, Yu S. | PLoS One | 10.1371/journal.pone.0096904 | 2014 | |
| Elevated Inactivation Efficacy of a Pulsed UVC Light-Emitting Diode System for Foodborne Pathogens on Selective Media and Food Surfaces. | Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01340-18 | 2018 | ||
| Stress | Inactivation Kinetics and Membrane Potential of Pathogens in Soybean Curd Subjected to Pulsed Ohmic Heating Depending on Applied Voltage and Duty Ratio. | Cho ER, Kim SS, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00656-20 | 2020 | |
| Antibacterial Activities of Wasabi against Escherichia coli O157:H7 and Staphylococcus aureus. | Lu Z, Dockery CR, Crosby M, Chavarria K, Patterson B, Giedd M. | Front Microbiol | 10.3389/fmicb.2016.01403 | 2016 | ||
| Metabolism | Characterisation of the bacterial microbiota of the vagina of dairy cows and isolation of pediocin-producing Pediococcus acidilactici. | Wang Y, Ametaj BN, Ambrose DJ, Ganzle MG. | BMC Microbiol | 10.1186/1471-2180-13-19 | 2013 | |
| Cloning, expression and immunogenicity of ferric enterobactin binding protein Fep B from Escherichia coli O157:H7. | Alipour M, Gargari SL, Rasooli I. | Indian J Microbiol | 10.1007/s12088-009-0044-7 | 2009 | ||
| Acid adaptation and temperature effect on the survival of E. coli O157:H7 in acidic fruit juice and lactic fermented milk product. | Hsin-Yi C, Chou CC. | Int J Food Microbiol | 10.1016/s0168-1605(01)00538-4 | 2001 | ||
| Development of Burdock Root Inulin/Chitosan Blend Films Containing Oregano and Thyme Essential Oils. | Cao TL, Yang SY, Song KB. | Int J Mol Sci | 10.3390/ijms19010131 | 2018 | ||
| Passive immunization by recombinant ferric enterobactin protein (FepA) from Escherichia coli O157. | Larrie-Bagha SM, Rasooli I, Mousavi-Gargari SL, Rasooli Z, Nazarian S. | Iran J Microbiol | 2013 | |||
| A Multiplex RT-PCR Assay for S. aureus, L. monocytogenes, and Salmonella spp. Detection in Raw Milk with Pre-enrichment. | Ding T, Suo Y, Zhang Z, Liu D, Ye X, Chen S, Zhao Y. | Front Microbiol | 10.3389/fmicb.2017.00989 | 2017 | ||
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| The Synergistic Bactericidal Mechanism of Simultaneous Treatment with a 222-Nanometer Krypton-Chlorine Excilamp and a 254-Nanometer Low-Pressure Mercury Lamp. | Kang JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01952-18 | 2019 | ||
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| Validation of apple cider pasteurization treatments against Escherichia coli O157:H7, Salmonella, and Listeria monocytogenes. | Mak PP, Ingham BH, Ingham SC. | J Food Prot | 10.4315/0362-028x-64.11.1679 | 2001 | ||
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| Effect of electropermeabilization by ohmic heating for inactivation of Escherichia coli O157:H7, Salmonella enterica serovar Typhimurium, and Listeria monocytogenes in buffered peptone water and apple juice. | Park IK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01818-13 | 2013 | ||
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| Characterization of Antibacterial Activities of Eastern Subterranean Termite, Reticulitermes flavipes, against Human Pathogens. | Zeng Y, Hu XP, Suh SJ. | PLoS One | 10.1371/journal.pone.0162249 | 2016 | ||
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| Protective immunity in recurrent Staphylococcus aureus infection reflects localized immune signatures and macrophage-conferred memory. | Chan LC, Rossetti M, Miller LS, Filler SG, Johnson CW, Lee HK, Wang H, Gjertson D, Fowler VG, Reed EF, Yeaman MR, MRSA Systems Immunobiology Group. | Proc Natl Acad Sci U S A | 10.1073/pnas.1808353115 | 2018 | ||
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| Stress | Simultaneous near-infrared radiant heating and UV radiation for inactivating Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in powdered red pepper (Capsicum annuum L.). | Ha JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.02249-13 | 2013 | |
| Identification of diarrheagenic Escherichia coli isolated from infants and children in Dar es Salaam, Tanzania. | Moyo SJ, Maselle SY, Matee MI, Langeland N, Mylvaganam H. | BMC Infect Dis | 10.1186/1471-2334-7-92 | 2007 | ||
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| Biotechnology | Effect of frequency and waveform on inactivation of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in salsa by ohmic heating. | Lee SY, Ryu S, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01802-12 | 2013 | |
| Biotechnology | Evaluation of near-infrared pasteurization in controlling Escherichia coli O157:H7, Salmonella enterica serovar typhimurium, and Listeria monocytogenes in ready-to-eat sliced ham. | Ha JW, Ryu SR, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00942-12 | 2012 | |
| Using UVC Light-Emitting Diodes at Wavelengths of 266 to 279 Nanometers To Inactivate Foodborne Pathogens and Pasteurize Sliced Cheese. | Kim SJ, Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.02092-15 | 2016 | ||
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| Fundamental Characteristics of Deep-UV Light-Emitting Diodes and Their Application To Control Foodborne Pathogens. | Shin JY, Kim SJ, Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01186-15 | 2016 | ||
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| Enhanced inactivation of food-borne pathogens in ready-to-eat sliced ham by near-infrared heating combined with UV-C irradiation and mechanism of the synergistic bactericidal action. | Ha JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01862-14 | 2015 | ||
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| Pathogenicity | Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni. | Xie Y, He Y, Irwin PL, Jin T, Shi X. | Appl Environ Microbiol | 10.1128/aem.02149-10 | 2011 | |
| Biocontrol of Escherichia coli O157 with O157-specific bacteriophages. | Kudva IT, Jelacic S, Tarr PI, Youderian P, Hovde CJ. | Appl Environ Microbiol | 10.1128/aem.65.9.3767-3773.1999 | 1999 | ||
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| Pathogenicity | Antimicrobial effects of mustard flour and acetic acid against Escherichia coli O157:H7, Listeria monocytogenes, and Salmonella enterica serovar Typhimurium. | Rhee MS, Lee SY, Dougherty RH, Kang DH. | Appl Environ Microbiol | 10.1128/aem.69.5.2959-2963.2003 | 2003 | |
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| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #49547 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29199 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #118358 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106324 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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