Escherichia coli CCUG 58078 is an aerobe bacterium that was isolated from Human feces.
aerobe genome sequence Bacteria
SI-ID 42105
| @ref 20215 |
Last LPSN update
2026-02-09 11:37:39 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| 61587 | Oxygen toleranceaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.4 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | - | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | + | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | + | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61587 | + | - | + | - | - | + | - | - | + | + | + | + | - | - | + | - | + | - | + | + | + | + | - | - | + | + | + | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 66792 | ASM246610v1 assembly for Escherichia coli MOD1-EC566 | contig | GCA_002466105   | 562.20995  | 562 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Incidence rates of resistant enterotoxigenic Escherichia coli in fresh vegetables and salads. | Vazquez-Quinones CR, Rincon-Guevara M, Natividad-Bonifacio I, Vazquez-Salinas C, Gonzalez-Marquez H. | Access Microbiol | 10.1099/acmi.0.000957.v3 | 2025 | | |
| Co-Culturing Bacillus Strains for Enhanced Antimicrobial Activity. | Tran C, Addison RS, Cock IE, Chen X, Feng Y. | Antibiotics (Basel) | 10.3390/antibiotics14090908 | 2025 | | |
| Multi-Drug Resistant Pathogenic Escherichia coli Isolated from Wild Birds, Chicken, and the Environment in Malaysia. | Mohamed MI, Abu J, Zakaria Z, Khan AR, Abdul Aziz S, Bitrus AA, Habib I. | Antibiotics (Basel) | 10.3390/antibiotics11101275 | 2022 | | |
| Enzymology | Isolation and identification of potential probiotic Lactobacillus species from feces of infants in southwest Iran. | Jomehzadeh N, Javaherizadeh H, Amin M, Saki M, Al-Ouqaili MTS, Hamidi H, Seyedmahmoudi M, Gorjian Z. | Int J Infect Dis | 10.1016/j.ijid.2020.05.034 | 2020 | |
| Aetiology of hospital-acquired diarrhoea in under-five children from an urban hospital in East Delhi, India. | Singh N, Shah D, Singh T, Saha R, Das S, Datt S, Gupta P. | Indian J Med Res | 10.4103/ijmr.ijmr_4138_20 | 2022 | | |
| Development of a recombinase polymerase amplification assay with lateral flow dipstick (RPA-LFD) for rapid detection of Shigella spp. and enteroinvasive Escherichia coli. | Bian Z, Liu W, Jin J, Hao Y, Jiang L, Xie Y, Zhang H. | PLoS One | 10.1371/journal.pone.0278869 | 2022 | | |
| Evaluation of the Vibrant DNA microarray for the high-throughput multiplex detection of enteric pathogens in clinical samples. | Yang Y, Rajendran V, Jayaraman V, Wang T, Bei K, Krishna K, Rajasekaran K, Rajasekaran JJ, Krishnamurthy H. | Gut Pathog | 10.1186/s13099-019-0329-2 | 2019 | | |
| Genetics | Escherichia albertii as a Potential Enteropathogen in the Light of Epidemiological and Genomic Studies. | Leszczynska K, Swiecicka I, Daniluk T, Lebensztejn D, Chmielewska-Deptula S, Leszczynska D, Gawor J, Kliber M. | Genes (Basel) | 10.3390/genes14071384 | 2023 | |
| Antimicrobial Properties of Bacillus Probiotics as Animal Growth Promoters. | Tran C, Horyanto D, Stanley D, Cock IE, Chen X, Feng Y. | Antibiotics (Basel) | 10.3390/antibiotics12020407 | 2023 | | |
| Genetic Diversity and Virulence Profiling of Multi-Drug Resistant Escherichia coli of Human, Animal, and Environmental Origins. | Yar A, Choudary MA, Rehman A, Hussain A, Elahi A, Ur Rehman F, Waqar AB, Alshammari A, Alharbi M, Nisar MA, Khurshid M, Khan Z. | Antibiotics (Basel) | 10.3390/antibiotics11081061 | 2022 | | |
| Detection of Mycoplasma Contamination of Cell Culture by A Loop-Mediated Isothermal Amplification Method. | Soheily Z, Soleimani M, Majidzadeh-Ardebili K. | Cell J | 10.22074/cellj.2019.5624 | 2019 | | |
| Prevalence of Antibiotic-Resistant Escherichia coli Isolated from Swine Faeces and Lagoons in Bulgaria. | Dimitrova L, Kaleva M, Zaharieva MM, Stoykova C, Tsvetkova I, Angelovska M, Ilieva Y, Kussovski V, Naydenska S, Najdenski H. | Antibiotics (Basel) | 10.3390/antibiotics10080940 | 2021 | | |
| Eugenol, citral, and hexanal, alone or in combination with heat, affect viability, biofilm formation, and swarming on Shiga-toxin-producing Escherichia coli. | Caballero-Prado CJ, Merino-Mascorro JA, Heredia N, Davila-Avina J, Garcia S. | Food Sci Biotechnol | 10.1007/s10068-021-00887-y | 2021 | | |
| Typical and atypical enteropathogenic Escherichia coli in children with acute diarrhoea: Changing trend in East Delhi. | Snehaa K, Singh T, Dar SA, Haque S, Ramachandran VG, Saha R, Shah D, Das S. | Biomed J | 10.1016/j.bj.2020.03.011 | 2021 | | |
| Development of A Loop-Mediated Isothermal Amplification (LAMP) Assay for Detection of Relapsing Fever Borreliae. | Houmansadr F, Soleimani M, Naddaf SR. | J Arthropod Borne Dis | 10.18502/jad.v14i1.2703 | 2020 | | |
| Study on the presence of resistant diarrheagenic pathotypes in Escherichia coli isolated from patients with urinary tract infection. | Derakhshan S, Farhadifar F, Roshani D, Ahmadi A, Haghi F. | Gastroenterol Hepatol Bed Bench | 2019 | | ||
| Phylogeny | Prevalence and antibiotic susceptibility patterns of enteric bacterial pathogens in human and non-human sources in an urban informal settlement in Cape Town, South Africa. | Kalule JB, Smith AM, Vulindhlu M, Tau NP, Nicol MP, Keddy KH, Robberts L. | BMC Microbiol | 10.1186/s12866-019-1620-6 | 2019 | |
| Isolation of Enteropathogenic Escherichia coli from lettuce samples in Tehran. | Mazaheri S, Salmanzadeh-Ahrabi S, Falsafi T, Aslani MM. | Gastroenterol Hepatol Bed Bench | 2014 | | ||
| Phylogeny | Rapid genetic typing of diarrheagenic Escherichia coli using a two-tube modified molecular beacon based multiplex real-time PCR assay and its clinical application. | Chen Q, Shi X, Li Y, Jiang Y, Lin Y, Qiu Y, Li Q, Hu Q. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-014-0030-8 | 2014 | |
| Screening for probiotic characters in lactobacilli isolated from chickens revealed the intra-species diversity of Lactobacillus brevis. | Noohi N, Papizadeh M, Rohani M, Talebi M, Pourshafie MR. | Anim Nutr | 10.1016/j.aninu.2020.07.005 | 2021 | | |
| High carriage of adherent invasive E. coli in wildlife and healthy individuals. | Rahmouni O, Vignal C, Titecat M, Foligne B, Pariente B, Dubuquoy L, Desreumaux P, Neut C. | Gut Pathog | 10.1186/s13099-018-0248-7 | 2018 | | |
| Genetics | Genome-Inspired Chemical Exploration of Marine Fungus Aspergillus fumigatus MF071. | Han J, Liu M, Jenkins ID, Liu X, Zhang L, Quinn RJ, Feng Y. | Mar Drugs | 10.3390/md18070352 | 2020 | |
| Pathogenicity | Diarrheagenic Escherichia coli and Shigella with High Rate of Extended-Spectrum Beta-Lactamase Production: Two Predominant Etiological Agents of Acute Diarrhea in Shiraz, Iran. | Aminshahidi M, Arastehfar A, Pouladfar G, Arman E, Fani F. | Microb Drug Resist | 10.1089/mdr.2017.0204 | 2017 | |
| Isolation of Shiga toxin-producing Escherichia coli from raw milk in Kermanshah, Iran. | Mohammadi P, Abiri R, Rezaei M, Salmanzadeh-Ahrabi S. | Iran J Microbiol | 2013 | | ||
| Shiga toxin-producing Escherichia coli isolated from lettuce samples in tehran, iran. | Mazaheri S, Salmanzadeh Ahrabi S, Aslani MM. | Jundishapur J Microbiol | 10.5812/jjm.12346 | 2014 | | |
| In Silico Analysis of the cadF Gene and Development of a Duplex Polymerase Chain Reaction for Species-Specific Identification of Campylobacter jejuni and Campylobacter coli. | Shams S, Bakhshi B, Tohidi Moghadam T. | Jundishapur J Microbiol | 10.5812/jjm.29645 | 2016 | | |
| Phylogeny | Detection and characterization of diarrheagenic Escherichia coli from young children in Hanoi, Vietnam. | Nguyen TV, Le Van P, Le Huy C, Gia KN, Weintraub A. | J Clin Microbiol | 10.1128/jcm.43.2.755-760.2005 | 2005 | |
| Investigation of the Antibacterial Activity and in vivo Cytotoxicity of Biogenic Silver Nanoparticles as Potent Therapeutics. | Hossain MM, Polash SA, Takikawa M, Shubhra RD, Saha T, Islam Z, Hossain S, Hasan MA, Takeoka S, Sarker SR. | Front Bioeng Biotechnol | 10.3389/fbioe.2019.00239 | 2019 | | |
| Phylogeny | Occurrence of diarrheagenic virulence genes and genetic diversity in Escherichia coli isolates from fecal material of various avian hosts in British Columbia, Canada. | Chandran A, Mazumder A. | Appl Environ Microbiol | 10.1128/aem.03949-13 | 2014 | |
| Protective effects of Lactobacillus plantarum against epithelial barrier dysfunction of human colon cell line NCM460. | Liu ZH, Shen TY, Zhang P, Ma YL, Moyer MP, Qin HL. | World J Gastroenterol | 10.3748/wjg.v16.i45.5759 | 2010 | | |
| Incidence of Campylobacter concisus and C. ureolyticus in traveler's diarrhea cases and asymptomatic controls in Nepal and Thailand. | Serichantalergs O, Ruekit S, Pandey P, Anuras S, Mason C, Bodhidatta L, Swierczewski B. | Gut Pathog | 10.1186/s13099-017-0197-6 | 2017 | | |
| Phylogeny | Pathogenic potential, genetic diversity, and population structure of Escherichia coli strains isolated from a forest-dominated watershed (Comox Lake) in British Columbia, Canada. | Chandran A, Mazumder A. | Appl Environ Microbiol | 10.1128/aem.03738-14 | 2015 | |
| Phylogeny | Prevalence of diarrhea-associated virulence genes and genetic diversity in Escherichia coli isolates from fecal material of various animal hosts. | Chandran A, Mazumder A. | Appl Environ Microbiol | 10.1128/aem.02653-13 | 2013 | |
| Metabolism | Involvement of the mannose receptor and p38 mitogen-activated protein kinase signaling pathway of the microdomain of the integral membrane protein after enteropathogenic Escherichia coli infection. | Liu Z, Ma Y, Moyer MP, Zhang P, Shi C, Qin H. | Infect Immun | 10.1128/iai.05930-11 | 2012 | |
| Enzymology | Contamination of potable water distribution systems by multiantimicrobial-resistant enterohemorrhagic Escherichia coli. | Ram S, Vajpayee P, Shanker R. | Environ Health Perspect | 10.1289/ehp.10809 | 2008 | |
| Enzymology | A multiplex PCR/LDR assay for simultaneous detection and identification of the NIAID category B bacterial food and water-borne pathogens. | Rundell MS, Pingle M, Das S, Hussain A, Ocheretina O, Charles M, Larone DH, Spitzer ED, Golightly L, Barany F. | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2014.02.022 | 2014 | |
| Highly Heterogeneous Probiotic Lactobacillus Species in Healthy Iranians with Low Functional Activities. | Rohani M, Noohi N, Talebi M, Katouli M, Pourshafie MR. | PLoS One | 10.1371/journal.pone.0144467 | 2015 | | |
| Identification of diarrheagenic Escherichia coli isolated from infants and children in Dar es Salaam, Tanzania. | Moyo SJ, Maselle SY, Matee MI, Langeland N, Mylvaganam H. | BMC Infect Dis | 10.1186/1471-2334-7-92 | 2007 | | |
| Enzymology | Presence and characterization of shiga toxin-producing Escherichia coli and other potentially diarrheagenic E. coli strains in retail meats. | Xia X, Meng J, McDermott PF, Ayers S, Blickenstaff K, Tran TT, Abbott J, Zheng J, Zhao S. | Appl Environ Microbiol | 10.1128/aem.01968-09 | 2010 | |
| Enzymology | Two or more enteropathogens are associated with diarrhoea in Mexican children. | Paniagua GL, Monroy E, Garcia-Gonzalez O, Alonso J, Negrete E, Vaca S. | Ann Clin Microbiol Antimicrob | 10.1186/1476-0711-6-17 | 2007 | |
| Phylogeny | Isolation and characterization of a beta-D-glucuronidase-producing strain of Escherichia coli serotype O157:H7 in the United States. | Hayes PS, Blom K, Feng P, Lewis J, Strockbine NA, Swaminathan B. | J Clin Microbiol | 10.1128/jcm.33.12.3347-3348.1995 | 1995 | |
| Metabolism | Bioprospecting Antimicrobials from Lactiplantibacillus plantarum: Key Factors Underlying Its Probiotic Action. | Rocchetti MT, Russo P, Capozzi V, Drider D, Spano G, Fiocco D. | Int J Mol Sci | 10.3390/ijms222112076 | 2021 | |
| Metabolism | Knockout of MIMP protein in lactobacillus plantarum lost its regulation of intestinal permeability on NCM460 epithelial cells through the zonulin pathway. | Liu Z, Kang L, Li C, Tong C, Huang M, Zhang X, Huang N, Moyer MP, Qin H, Wang J. | BMC Gastroenterol | 10.1186/1471-230x-14-171 | 2014 | |
| Biotechnology | Evaluation of accuracy and repeatability of identification of food-borne pathogens by automated bacterial identification systems. | Odumeru JA, Steele M, Fruhner L, Larkin C, Jiang J, Mann E, McNab WB. | J Clin Microbiol | 10.1128/jcm.37.4.944-949.1999 | 1999 | |
| Enzymology | Rapid detection of Vibrio vulnificus in shellfish and Gulf of Mexico water by real-time PCR. | Panicker G, Myers ML, Bej AK. | Appl Environ Microbiol | 10.1128/aem.70.1.498-507.2004 | 2004 | |
| Metabolism | Detection of virulence factors in culturable Escherichia coli isolates from water samples by DNA probes and recovery of toxin-bearing strains in minimal o-nitrophenol-beta-D-galactopyranoside-4-methylumbelliferyl-beta-D-g luc uronide media. | Martins MT, Rivera IG, Clark DL, Olson BH. | Appl Environ Microbiol | 10.1128/aem.58.9.3095-3100.1992 | 1992 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive155545.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data
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