Name: Escherichia coli 4608-58
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139528

Type strain:

Species: Escherichia coli

Strain Designation: 4608-58

Culture col. no.: CIP 110272, NCIMB 13059, NCTC 10090, WDCM 00091, CECT 8147, CCUG 11443

Strain history: CIP <- 2011, NCIMB <- 1990, NCTC <- 1960, J. Taylor, PHLS Colindale, UK / W.H. Ewing, CDC, Atlanta, USA: strain 4608-58

NCBI tax ID(s): 562 (species)

SI-ID 53710

CCUG 11443, NCTC 10090, NCIMB 13059, CECT 8147, CIP 110272

Other strains from Escherichia coli

Section

Escherichia coli 4608-58 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.

motile
facultative anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia coli**
	Full Scientific Name (LPSN)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Bacillus coli"

Information on morphological and physiological properties Morphology

[Ref.: #41828]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.962

[Ref.: #41828]	Cell shape	rod-shaped

[Ref.: #41828]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.056

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41828]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41828]

Culture medium growth

[Ref.: #41828]

Culture medium composition

expand / minimize

[Ref.: #41828]

Culture medium

CIP Medium 72

[Ref.: #41828]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #41828]			growth	30 °C

[Ref.: #41828]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #41828]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.478

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #41828]		nitrate ChEBI	+	reduction
[Ref.: #41828]		nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #41828]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #41828]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #41828]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #41828]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #41828]	12478	-	+	+	-	-	+	+	-	+	-	+	+	-	+	+	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #41828]	Isolation date	1960
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia coli NCTC10090	GCA_900449985	contig	GenBank	562 tax ID	*
[Ref.: #66792]	Escherichia coli strain NCTC10090	562.34300	wgs	PATRIC	562 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli strain NCTC10090 PATRIC: 562.34300
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli strain NCTC10090 PATRIC: 562.34300
[Ref.: #69480]	gram-positive	no	98.022	no
[Ref.: #69480]	anaerobic	no	95.682	no
[Ref.: #69480]	halophile	no	90.428	no
[Ref.: #69480]	spore-forming	no	93.93	no
[Ref.: #69480]	glucose-util	yes	94.684	no
[Ref.: #69480]	thermophile	no	99.033	yes
[Ref.: #69480]	flagellated	no	61.399	no
[Ref.: #69480]	motile	yes	88.484	no
[Ref.: #69480]	aerobic	yes	86.562	no
[Ref.: #69480]	glucose-ferment	yes	92.656	no

Availability in culture collections External links

[Ref.: #41828]

Culture collection no.

CIP 110272, NCIMB 13059, NCTC 10090, WDCM 00091, CECT 8147, CCUG 11443

[Ref.: #96014]

SI-ID 53710

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41828 Collection of Institut Pasteur ; Curators of the CIP; CIP 110272

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96014

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID53710.1 )

* These data were automatically processed and therefore are not curated

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Escherichia coli strain NCTC10090

Escherichia coli strain NCTC10090

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