Escherichia coli K12 is a facultative anaerobe, Gram-negative, motile bacterium that has multiple antibiotic resistances and was isolated from Feces from a convalescent diphtheria patient.
antibiotic resistance Gram-negative motile rod-shaped facultative anaerobe genome sequence Bacteria| @ref 20215 |
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|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 118697 | negative | rod-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 237 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 42190 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 68368 | MacConkey medium | from API 20E | |||
| 118697 | CIP Medium 72 | Medium recipe at CIP |
| 118697 | Oxygen tolerancefacultative anaerobe |
| Test 1 | Test 2 | |
|---|---|---|
| @ref | 237 | 237 |
| Medium | Mueller-Hinton Agar | Mueller-Hinton Agar |
| Manual annotation | 1 | 1 |
| Inhibition zone diameter in mm | Inhibition zone diameter in mm | |
| Amikacin 30µg (disc) | 26 | 28 |
| Ampicillin 10µg (disc) | 20 | 22 |
| Aztreonam 30µg (disc) | 36 | 40-42 |
| Bacitracin 10Unit | 0 | 0 |
| Cefalotin 30µg (disc) | 22 | 24 |
| Cefazolin 30µg (disc) | 28-30 | 30 |
| Cefotaxime 30µg (disc) | 40 | 40-42 |
| Ceftriaxone 30µg (disc) | 36 | 40-42 |
| Chloramphenicol 30µg (disc) | 28-30 | 30 |
| Clindamycin 10µg (disc) | 0 | 0 |
| Colistin 10µg (disc) | 14 | 16 |
| Doxycycline 30µg (disc) | 22 | 24 |
| Erythromycin 15µg (disc) | 12 | 14 |
| Fosfomycin 50µg (disc) | 40 | 40 |
| Gentamycin 10µg (disc) | ||
| Imipenem 10µg (disc) | 34 | 36 |
| Kanamycin 30µg (disc) | 24-26 | 38 |
| Lincomycin 15µg (disc) | 0 | 0 |
| Linezolid 10µg (disc) | 0 | 0 |
| Mezlocillin 30µg (disc) | 28 | 30 |
| Moxifloxacin 5µg (disc) | 32 | 34 |
| Neomycin 30µg (disc) | 20 | 20-22 |
| Nitrofurantoin 100µg (disc) | 26-28 | 26-28 |
| Norfloxacin 10µg (disc) | 32-34 | 36 |
| Nystatin 100Unit | 0 | 0 |
| Ofloxacin 5µg (disc) | 34 | 34-36 |
| Oxacillin 5µg (disc) | 0 | 0 |
| Penicillin G 6µg (disc) | 0 | 0 |
| Pipemidic acid 20µg (disc) | 26 | 28 |
| Piperacillin/Tazobactam 40µg (disc) | 28 | 32 |
| Polymyxin B 300Unit | 16 | 16 |
| Quinupristin/Dalfopristin 15µg (disc) | 0 | 0 |
| Teicoplanin 30µg (disc) | 0 | 0 |
| Tetracycline 30µg (disc) | 30 | 30 |
| Ticarcillin 75µg (disc) | 32 | 32 |
| Vancomycin 30µg (disc) | 8 | 0 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | + | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 118697 | 17632 ChEBI | nitrate | + | reduction | |
| 68368 | 17632 ChEBI | nitrate | + | reduction | from API 20E |
| 118697 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | + | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ChEBI | Metabolite | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|
| 237 | 28669 | Bacitracin | 10 Unit | from Antibiotic test | |
| 237 | 3745 | Clindamycin | 10 µg (disc) | from Antibiotic test | |
| 237 | 6472 | Lincomycin | 15 µg (disc) | from Antibiotic test | |
| 237 | 63607 | Linezolid | 10 µg (disc) | from Antibiotic test | |
| 237 | 7660 | Nystatin | 100 Unit | from Antibiotic test | |
| 237 | 7809 | Oxacillin | 5 µg (disc) | from Antibiotic test | |
| 237 | 18208 | Penicillin G | 6 µg (disc) | from Antibiotic test | |
| 237 | Quinupristin/Dalfopristin | 15 µg (disc) | from Antibiotic test | ||
| 237 | 29687 | Teicoplanin | 30 µg (disc) | from Antibiotic test |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 118697 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 118697 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 118697 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237 | - | + | - | - | + | + | + | + | + | + | + | + | + | + | - | + | + | - | + | + | - | - | + | - | - | - | - | - | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | + |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 118697 | Feces from a convalescent diphtheria patient | California | United States of America | USA | North America | 1922 |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | 1258 assembly for Escherichia coli DSM 498 | complete | 562 | 99.08 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Proteome | Proteomic insights into survival strategies of Escherichia coli in perchlorate-rich Martian brines. | Kloss LDF, Doellinger J, Gries A, Soler E, Lasch P, Heinz J. | Sci Rep | 10.1038/s41598-025-91562-3 | 2025 | |
| Evaluation of Gold Complexes to Address Bacterial Resistance, Quorum Sensing, Biofilm Formation, and Their Antiviral Properties against Bacteriophages. | Marques A, Carabineiro SAC, Aureliano M, Faleiro L. | Toxics | 10.3390/toxics11110879 | 2023 | ||
| Bacterial reduction and temperature increase of titanium dental implant models treated with a 445 nm diode laser: an in vitro study. | Ahrens M, Sporer M, Deppe H, Ritschl LM, Mela P. | Sci Rep | 10.1038/s41598-024-68780-2 | 2024 | ||
| Viability and Motility of Escherichia coli Under Elevated Martian Salt Stresses. | Riekeles M, Santos B, Youssef SA, Schulze-Makuch D. | Life (Basel) | 10.3390/life14121526 | 2024 | ||
| Pharmacological and behavioral investigation of putative self-medicative plants in Budongo chimpanzee diets. | Freymann E, Carvalho S, Garbe LA, Dwi Ghazhelia D, Hobaiter C, Huffman MA, Muhumuza G, Schulz L, Sempebwa D, Wald F, Yikii ER, Zuberbuhler K, Schultz F. | PLoS One | 10.1371/journal.pone.0305219 | 2024 | ||
| Phenotype | Rapid Phenotypic Antibiotics Susceptibility Analysis by a 3D Printed Prototype. | Riester O, Kaiser L, Laufer S, Deigner HP. | Adv Sci (Weinh) | 10.1002/advs.202308806 | 2024 | |
| 5-Keto-D-Fructose, a Natural Diketone and Potential Sugar Substitute, Significantly Reduces the Viability of Prokaryotic and Eukaryotic Cells. | Hovels M, Gallala N, Keriakes SL, Konig AP, Schiessl J, Laporte T, Kosciow K, Deppenmeier U. | Front Microbiol | 10.3389/fmicb.2022.935062 | 2022 | ||
| Phylogeny | Rapid detection and discrimination of food-related bacteria using IR-microspectroscopy in combination with multivariate statistical analysis. | Klein D, Breuch R, Reinmuller J, Engelhard C, Kaul P. | Talanta | 10.1016/j.talanta.2021.122424 | 2021 | |
| Genome-mining-guided discovery of coumarubrin: A novel aminocoumarin-substituted rubromycin antibiotic. | Weddeling HG, Sowa ST, Bosshardt S, Schwimbersky L, Rakhmanov M, Teufel R. | J Ind Microbiol Biotechnol | 10.1093/jimb/kuaf018 | 2024 | ||
| Assessment of the feed additives consisting of Lactiplantibacillus plantarum DSM 3676, Lactiplantibacillus plantarum DSM 3677 and Lentilactobacillus buchneri DSM 13573 for all animal species for the renewal of their authorisations (ADDCON GmbH). | EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Freixa MA, Brozzi R, Garcia-Cazorla Y. | EFSA J | 10.2903/j.efsa.2023.8162 | 2023 | ||
| Monitoring the effect of active packaging films with silver-kaolinite using different packaging systems on the quality of beef meat. | Nur Hanani ZA, Reich F, Tolksdorf T, Siemen H, Bandick N. | Heliyon | 10.1016/j.heliyon.2022.e11019 | 2022 | ||
| A high-throughput assay identifies molecules with antimicrobial activity against persister cells. | Petersen ME, Hansen LK, Mitkin AA, Kelly NM, Wood TK, Jorgensen NP, Ostergaard LJ, Meyer RL. | J Med Microbiol | 10.1099/jmm.0.001856 | 2024 | ||
| Laboratory Diagnostic Methods and Antibiotic Resistance Patterns of Staphylococcus aureus and Escherichia coli Strains: An Evolving Human Health Challenge. | Alzaben F, Fat'hi S, Elbehiry A, Alsugair M, Marzouk E, Abalkhail A, Almuzaini AM, Rawway M, Ibrahem M, Sindi W, Alshehri T, Hamada M. | Diagnostics (Basel) | 10.3390/diagnostics12112645 | 2022 | ||
| In vitro biocompatibility analysis of protein-resistant amphiphilic polysulfobetaines as coatings for surgical implants in contact with complex body fluids. | Karthauser JF, Gruhn D, Martinez Guajardo A, Kopecz R, Babel N, Stervbo U, Laschewsky A, Viebahn R, Salber J, Rosenhahn A. | Front Bioeng Biotechnol | 10.3389/fbioe.2024.1403654 | 2024 | ||
| Meroterpenoids Possibly Produced by a Bacterial Endosymbiont of the Tropical Basidiomycete Echinochaete brachypora. | Hassan K, Chepkirui C, Llanos-Lopez NA, Matasyoh JC, Decock C, Marin-Felix Y, Stadler M. | Biomolecules | 10.3390/biom12060755 | 2022 | ||
| Preparation, Characterization and Antimicrobial Properties of Nanosized Silver-Containing Carbon/Silica Composites from Rice Husk Waste. | Unglaube F, Lammers A, Kreyenschulte CR, Lalk M, Mejia E. | ChemistryOpen | 10.1002/open.202100239 | 2021 | ||
| Critical physiological factors influencing the outcome of antimicrobial testing according to ISO 22196 / JIS Z 2801. | Wiegand C, Volpel A, Ewald A, Remesch M, Kuever J, Bauer J, Griesheim S, Hauser C, Thielmann J, Tonndorf-Martini S, Sigusch BW, Weisser J, Wyrwa R, Elsner P, Hipler UC, Roth M, Dewald C, Ludecke-Beyer C, Bossert J. | PLoS One | 10.1371/journal.pone.0194339 | 2018 | ||
| Functionalized Micellar Membranes from Medicinal Mushrooms as Promising Self-Growing Bioscaffolds. | Kucuk N, Primozic M, Knez Z, Leitgeb M. | Polymers (Basel) | 10.3390/polym17172334 | 2025 | ||
| Sequential Separation of Essential Oil Components during Hydrodistillation of Fresh Foliage from Azorean Cryptomeria japonica (Cupressaceae): Effects on Antibacterial, Antifungal, and Free Radical Scavenging Activities. | Arruda F, Lima A, Wortham T, Janeiro A, Rodrigues T, Baptista J, Rosa JS, Lima E. | Plants (Basel) | 10.3390/plants13131729 | 2024 | ||
| Lighting the Path: Raman Spectroscopy's Journey Through the Microbial Maze. | Salbreiter M, Frempong SB, Even S, Wagenhaus A, Girnus S, Rosch P, Popp J. | Molecules | 10.3390/molecules29245956 | 2024 | ||
| Chicken Skin Decontamination of Thermotolerant Campylobacter spp. and Hygiene Indicator Escherichia coli Assessed by Viability Real-Time PCR. | Wulsten IF, Thieck M, Gohler A, Schuh E, Stingl K. | Pathogens | 10.3390/pathogens11060706 | 2022 | ||
| Phylogeny | Discrimination of Stressed and Non-Stressed Food-Related Bacteria Using Raman-Microspectroscopy. | Klein D, Breuch R, Reinmuller J, Engelhard C, Kaul P. | Foods | 10.3390/foods11101506 | 2022 | |
| Pathogenicity | Bactericidal activity of Cu-, Zn-, and Ag-containing zeolites toward Escherichia coli isolates. | Milenkovic J, Hrenovic J, Matijasevic D, Niksic M, Rajic N. | Environ Sci Pollut Res Int | 10.1007/s11356-017-9643-8 | 2017 | |
| Synergy of R-(-)carvone and cyclohexenone-based carbasugar precursors with antibiotics to enhance antibiotic potency and inhibit biofilm formation. | Riester O, Burkhardtsmaier P, Gurung Y, Laufer S, Deigner HP, Schmidt MS. | Sci Rep | 10.1038/s41598-022-22807-8 | 2022 | ||
| 3D Biofilm Models Containing Multiple Species for Antimicrobial Testing of Wound Dressings. | Reddersen K, Tittelbach J, Wiegand C. | Microorganisms | 10.3390/microorganisms10102027 | 2022 | ||
| Enterobacter cloacae from urinary tract infections: frequency, protein analysis, and antimicrobial resistance. | Elbehiry A, Al Shoaibi M, Alzahrani H, Ibrahem M, Moussa I, Alzaben F, Alsubki RA, Hemeg HA, Almutairi D, Althobaiti S, Alanazi F, Alotaibi SA, Almutairi H, Alzahrani A, Abu-Okail A. | AMB Express | 10.1186/s13568-024-01675-7 | 2024 | ||
| Mid-Infrared Photothermal-Fluorescence In Situ Hybridization for Functional Analysis and Genetic Identification of Single Cells. | Bai Y, Guo Z, Pereira FC, Wagner M, Cheng JX. | Anal Chem | 10.1021/acs.analchem.2c04474 | 2023 | ||
| Phylogeny | Discrimination between pathogenic and non-pathogenic E. coli strains by means of Raman microspectroscopy. | Lorenz B, Ali N, Bocklitz T, Rosch P, Popp J. | Anal Bioanal Chem | 10.1007/s00216-020-02957-2 | 2020 | |
| Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria. | Razi S, Tarcea N, Henkel T, Ravikumar R, Pistiki A, Wagenhaus A, Girnus S, Taubert M, Kusel K, Rosch P, Popp J. | Sensors (Basel) | 10.3390/s24144503 | 2024 | ||
| The myth of antibiotic spider silk. | Fruergaard S, Lund MB, Schramm A, Vosegaard T, Bilde T. | iScience | 10.1016/j.isci.2021.103125 | 2021 | ||
| Alginate Beads with Encapsulated Bioactive Substances from Mangifera indica Peels as Promising Peroral Delivery Systems. | Kucuk N, Primozic M, Knez Z, Leitgeb M. | Foods | 10.3390/foods13152404 | 2024 | ||
| Investigations Into the Suitability of Bacterial Suspensions as Biological Indicators for Low-Energy Electron Irradiation. | Schopf S, Gotzmann G, Dietze M, Gerschke S, Kenner L, Konig U. | Front Immunol | 10.3389/fimmu.2022.814767 | 2022 | ||
| Generation Times of E. coli Prolong with Increasing Tannin Concentration while the Lag Phase Extends Exponentially. | Stumpf S, Hostnik G, Primozic M, Leitgeb M, Bren U. | Plants (Basel) | 10.3390/plants9121680 | 2020 | ||
| Pathogenicity | Recombinant AfusinC, an anionic fungal CSalphabeta defensin from Aspergillus fumigatus, exhibits antimicrobial activity against gram-positive bacteria. | Contreras G, Braun MS, Schafer H, Wink M. | PLoS One | 10.1371/journal.pone.0205509 | 2018 | |
| Enhanced Bioactivity of Tailor-Made Glycolipid Enriched Manuka Honey. | Delavault A, Zoheir AE, Muller D, Hollenbach R, Rabe KS, Ochsenreither K, Rudat J, Syldatk C. | Int J Mol Sci | 10.3390/ijms231912031 | 2022 | ||
| Phylogeny | Different Secondary Metabolite Profiles of Phylogenetically almost Identical Streptomyces griseus Strains Originating from Geographically Remote Locations. | Sottorff I, Wiese J, Lipfert M, Preusske N, Sonnichsen FD, Imhoff JF. | Microorganisms | 10.3390/microorganisms7060166 | 2019 | |
| Phylogeny | Investigation and Rapid Discrimination of Food-Related Bacteria under Stress Treatments Using IR Microspectroscopy. | Klein D, Breuch R, Reinmuller J, Engelhard C, Kaul P. | Foods | 10.3390/foods10081850 | 2021 | |
| Stress | Biofouling on polymeric heat exchanger surfaces with E. coli and native biofilms. | Pohl S, Madzgalla M, Manz W, Bart HJ. | Biofouling | 10.1080/08927014.2015.1094691 | 2015 | |
| Genes for laminarin degradation are dispersed in the genomes of particle-associated Maribacter species. | Kalenborn S, Zuhlke D, Reintjes G, Riedel K, Amann RI, Harder J. | Front Microbiol | 10.3389/fmicb.2024.1393588 | 2024 | ||
| Infrared nanoscopy and tomography of intracellular structures. | Kanevche K, Burr DJ, Nurnberg DJ, Hass PK, Elsaesser A, Heberle J. | Commun Biol | 10.1038/s42003-021-02876-7 | 2021 | ||
| Detection of multi-resistant clinical strains of E. coli with Raman spectroscopy. | Nakar A, Pistiki A, Ryabchykov O, Bocklitz T, Rosch P, Popp J. | Anal Bioanal Chem | 10.1007/s00216-021-03800-y | 2022 | ||
| Functionalization of an extended-gate field-effect transistor (EGFET) for bacteria detection. | Konemund L, Neumann L, Hirschberg F, Biedendieck R, Jahn D, Johannes HH, Kowalsky W. | Sci Rep | 10.1038/s41598-022-08272-3 | 2022 | ||
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| Machine Learning Algorithms Applied to Identify Microbial Species by Their Motility. | Riekeles M, Schirmack J, Schulze-Makuch D. | Life (Basel) | 10.3390/life11010044 | 2021 | ||
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| Chemical Characterization, Nutritional and Bioactive Properties of Physalis peruviana Fruit from High Areas of the Atacama Desert. | Munoz P, Parra F, Simirgiotis MJ, Sepulveda Chavera GF, Parra C. | Foods | 10.3390/foods10112699 | 2021 | ||
| Antioxidant and Antibacterial Capacities of Origanum vulgare L. Essential Oil from the Arid Andean Region of Chile and its Chemical Characterization by GC-MS. | Simirgiotis MJ, Burton D, Parra F, Lopez J, Munoz P, Escobar H, Parra C. | Metabolites | 10.3390/metabo10100414 | 2020 | ||
| Evaluation of ultraviolet (UV-C) light treatment for microbial inactivation in agricultural waters with different levels of turbidity. | Adhikari A, Parraga Estrada KJ, Chhetri VS, Janes M, Fontenot K, Beaulieu JC. | Food Sci Nutr | 10.1002/fsn3.1412 | 2020 | ||
| UHPLC-DAD Characterization of Origanum vulgare L. from Atacama Desert Andean Region and Antioxidant, Antibacterial and Enzyme Inhibition Activities. | Parra C, Munoz P, Bustos L, Parra F, Simirgiotis MJ, Escobar H. | Molecules | 10.3390/molecules26072100 | 2021 | ||
| Pathogenicity | Attachment strength and on-farm die-off rate of Escherichia coli on watermelon surfaces. | Chhetri VS, Fontenot K, Strahan R, Yemmireddy VK, Cason C, Kharel K, Adhikari A. | PLoS One | 10.1371/journal.pone.0210115 | 2019 | |
| Metabolism | Effects of high hydrostatic pressure and temperature increase on Escherichia coli spp. and pectin methyl esterase inactivation in orange juice. | Torres EF, Gonzalez-M G, Klotz B, Rodrigo D. | Food Sci Technol Int | 10.1177/1082013215582107 | 2016 | |
| Hydrogen Sulfide and Carbon Monoxide Tolerance in Bacteria. | Mendes SS, Miranda V, Saraiva LM. | Antioxidants (Basel) | 10.3390/antiox10050729 | 2021 | ||
| Biotechnology | Monte Carlo simulation as a method to determine the critical factors affecting two strains of Escherichia coli inactivation kinetics by high hydrostatic pressure. | Pina-Perez MC, Garcia-Fernandez MM, Rodrigo D, Martinez-Lopez A. | Foodborne Pathog Dis | 10.1089/fpd.2009.0383 | 2010 | |
| Evaluation of the antibacterial potential of silver nanoparticles synthesized through the interaction of antibiotic and aqueous callus extract of Fagonia indica. | Adil M, Khan T, Aasim M, Khan AA, Ashraf M. | AMB Express | 10.1186/s13568-019-0797-2 | 2019 | ||
| Pathogenicity | Antiinflammatory Medicinal Plants from the Ugandan Greater Mpigi Region Act as Potent Inhibitors in the COX-2/PGH2 Pathway. | Schultz F, Osuji OF, Wack B, Anywar G, Garbe LA. | Plants (Basel) | 10.3390/plants10020351 | 2021 | |
| Intraspecific Variation of Phytochemicals, Antioxidant, and Antibacterial Activities of Different Solvent Extracts of Albizia coriaria Leaves from Some Agroecological Zones of Uganda. | Omara T, Kiprop AK, Kosgei VJ. | Evid Based Complement Alternat Med | 10.1155/2021/2335454 | 2021 | ||
| Stress | Membrane damage and viability loss of Escherichia coli K-12 and Salmonella enteritidis in liquid egg by thermal death time disk treatment. | Ukuku DO, Jin T, Zhang H. | J Food Prot | 10.4315/0362-028x-71.10.1988 | 2008 | |
| Metabolism | Engineering the Outer Membrane Could Facilitate Better Bacterial Performance and Effectively Enhance Poly-3-Hydroxybutyrate Accumulation. | Wang J, Ma W, Fang Y, Zhang H, Liang H, Liu H, Wang T, Chen S, Ji J, Wang X. | Appl Environ Microbiol | 10.1128/aem.01389-21 | 2021 | |
| Metabolism | The Di-iron RIC Protein (YtfE) of Escherichia coli Interacts with the DNA-Binding Protein from Starved Cells (Dps) To Diminish RIC Protein-Mediated Redox Stress. | Silva LSO, Baptista JM, Batley C, Andrews SC, Saraiva LM. | J Bacteriol | 10.1128/jb.00527-18 | 2018 | |
| Pathogenicity | Surface structure influences contact killing of bacteria by copper. | Zeiger M, Solioz M, Edongue H, Arzt E, Schneider AS. | Microbiologyopen | 10.1002/mbo3.170 | 2014 | |
| Pathogenicity | Sensing bacterial vibrations and early response to antibiotics with phase noise of a resonant crystal. | Johnson WL, France DC, Rentz NS, Cordell WT, Walls FL. | Sci Rep | 10.1038/s41598-017-12063-6 | 2017 | |
| Metabolism | Oxidative stress modulates the nitric oxide defense promoted by Escherichia coli flavorubredoxin. | Baptista JM, Justino MC, Melo AM, Teixeira M, Saraiva LM. | J Bacteriol | 10.1128/jb.00140-12 | 2012 | |
| Pathogenicity | Acid tolerance and acid shock response of Escherichia coli O157:H7 and non-O157:H7 isolates provide cross protection to sodium lactate and sodium chloride. | Garren DM, Harrison MA, Russell SM. | J Food Prot | 10.4315/0362-028x-61.2.158 | 1998 | |
| Pathogenicity | Inactivation of Bacteria by gamma-Irradiation to Investigate the Interaction with Antimicrobial Peptides. | Correa W, Brandenburg J, Behrends J, Heinbockel L, Reiling N, Paulowski L, Schwudke D, Stephan K, Martinez-de-Tejada G, Brandenburg K, Gutsmann T. | Biophys J | 10.1016/j.bpj.2019.10.012 | 2019 | |
| Survival, Biofilm Formation, and Growth Potential of Environmental and Enteric Escherichia coli Strains in Drinking Water Microcosms. | Abberton CL, Bereschenko L, van der Wielen PW, Smith CJ. | Appl Environ Microbiol | 10.1128/aem.01569-16 | 2016 | ||
| Pathogenicity | The ygaVP genes of Escherichia coli form a tributyltin-inducible operon. | Gueune H, Durand MJ, Thouand G, DuBow MS. | Appl Environ Microbiol | 10.1128/aem.02294-07 | 2008 | |
| Pathogenicity | NKCS, a Mutant of the NK-2 Peptide, Causes Severe Distortions and Perforations in Bacterial, But Not Human Model Lipid Membranes. | Ciobanasu C, Rzeszutek A, Kubitscheck U, Willumeit R. | Molecules | 10.3390/molecules20046941 | 2015 | |
| Metabolism | Photocatalytic disinfection using titanium dioxide: spectrum and mechanism of antimicrobial activity. | Foster HA, Ditta IB, Varghese S, Steele A. | Appl Microbiol Biotechnol | 10.1007/s00253-011-3213-7 | 2011 | |
| Influence of amino acids on low-density Escherichia coli responses to nutrient downshifts. | Bodini S, Nunziangeli L, Santori F. | J Bacteriol | 10.1128/jb.01753-06 | 2007 | ||
| Excellent antimicrobial properties of silver-loaded mesoporous silica SBA-15. | Wang L, He H, Zhang C, Sun L, Liu S, Yue R. | J Appl Microbiol | 10.1111/jam.12443 | 2014 | ||
| Metabolism | Widespread distribution in pathogenic bacteria of di-iron proteins that repair oxidative and nitrosative damage to iron-sulfur centers. | Overton TW, Justino MC, Li Y, Baptista JM, Melo AM, Cole JA, Saraiva LM. | J Bacteriol | 10.1128/jb.01733-07 | 2008 | |
| Antimicrobial action of carbon monoxide-releasing compounds. | Nobre LS, Seixas JD, Romao CC, Saraiva LM. | Antimicrob Agents Chemother | 10.1128/aac.00802-07 | 2007 | ||
| Enzymology | Fate of Escherichia coli O157:H7 on fresh-cut apple tissue and its potential for transmission by fruit flies. | Janisiewicz WJ, Conway WS, Brown MW, Sapers GM, Fratamico P, Buchanan RL. | Appl Environ Microbiol | 10.1128/aem.65.1.1-5.1999 | 1999 | |
| Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities. | Peabody MA, Van Rossum T, Lo R, Brinkman FS. | BMC Bioinformatics | 10.1186/s12859-015-0788-5 | 2015 | ||
| Development and validation of a whole-cell inhibition assay for bacterial methionine aminopeptidase by surface-enhanced laser desorption ionization-time of flight mass spectrometry. | Greis KD, Zhou S, Siehnel R, Klanke C, Curnow A, Howard J, Layh-Schmitt G. | Antimicrob Agents Chemother | 10.1128/aac.49.8.3428-3434.2005 | 2005 | ||
| Pathogenicity | Effects of pH, glucose, and chelating agents on lethality of paraquat to Escherichia coli. | Minakami H, Kitzler JW, Fridovich I. | J Bacteriol | 10.1128/jb.172.2.691-695.1990 | 1990 | |
| Pathogenicity | Effects of paraquat on Escherichia coli: differences between B and K-12 strains. | Kitzler JW, Minakami H, Fridovich I. | J Bacteriol | 10.1128/jb.172.2.686-690.1990 | 1990 | |
| Screening of uropathogenic Escherichia coli for expression of mannose-selective adhesins: importance of culture conditions. | Fein JE. | J Clin Microbiol | 10.1128/jcm.13.6.1088-1095.1981 | 1981 | ||
| Pathogenicity | Cytolytic and antibacterial activity of synthetic peptides derived from amoebapore, the pore-forming peptide of Entamoeba histolytica. | Leippe M, Andra J, Muller-Eberhard HJ. | Proc Natl Acad Sci U S A | 10.1073/pnas.91.7.2602 | 1994 | |
| Pathogenicity | Morphological response of Bilophila wadsworthia to imipenem: correlation with properties of penicillin-binding proteins. | Summanen P, Wexler HM, Lee K, Becker SA, Garcia MM, Finegold SM. | Antimicrob Agents Chemother | 10.1128/aac.37.12.2638 | 1993 | |
| Enzymology | Antimicrobial Polymers in the Nano-World. | Alvarez-Paino M, Munoz-Bonilla A, Fernandez-Garcia M. | Nanomaterials (Basel) | 10.3390/nano7020048 | 2017 | |
| Metabolism | Polyclonal antibodies recognizing the AmoB protein of ammonia oxidizers of the beta-subclass of the class Proteobacteria. | Pinck C, Coeur C, Potier P, Bock E. | Appl Environ Microbiol | 10.1128/aem.67.1.118-124.2001 | 2001 | |
| Enzymology | Superoxide dismutase and catalase levels in halophilic vibrios. | Daily OP, Debell RM, Joseph SW. | J Bacteriol | 10.1128/jb.134.2.375-380.1978 | 1978 | |
| Phylogeny | Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase. | Bartosch S, Wolgast I, Spieck E, Bock E. | Appl Environ Microbiol | 10.1128/aem.65.9.4126-4133.1999 | 1999 | |
| Metabolism | Functional capacities and the adenylate energy charge in Escherichia coli under conditions of nutritional stress. | Walker-Simmons M, Atkinson DE. | J Bacteriol | 10.1128/jb.130.2.676-683.1977 | 1977 | |
| Safety and Quality Improvement of NaCl-Reduced Banana and Apple Fermented with Lacticaseibacillus paracasei. | Martin-Miguelez JM, Delgado J, Martin I, Gonzalez-Mohino A, Olegario LS. | Foods | 10.3390/foods14010051 | 2024 | ||
| Acylase-Based Coatings on Sandblasted Polydimethylsiloxane-Based Materials for Antimicrobial Applications. | Silva CA, Moreira J, Fernandes M, Zille A, Cardoso VF, Nine MJ, Silva FS, Fernandes MM. | Polymers (Basel) | 10.3390/polym17020182 | 2025 |
| #237 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 498 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #42190 | ; Curators of the CIP; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #118697 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110067 |
| #124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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