Name: Escherichia coli CCUG 11393
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 142252

Type strain:

Species: Escherichia coli

Culture col. no.: CCUG 11393, NCDC H307b, ATCC 23980, NCTC 9091

NCBI tax ID(s): 562 (species)

SI-ID 45737

ATCC 23980, CCUG 11393, NCTC 9091, BCRC 15876, CCRC 15876, CNCTC 5004

Special Collections

CCUG

Other strains from Escherichia coli

Section

Escherichia coli CCUG 11393 is a Gram-negative bacterium that was isolated from Human feces.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia coli**
	Full Scientific Name (LPSN)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Bacillus coli"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.75

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #45511]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia coli NCTC9091	GCA_900449575	contig	GenBank ENA	562 tax ID	*
[Ref.: #66792]	Escherichia coli strain NCTC9091	562.34264	wgs	PATRIC	562 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli strain NCTC9091 PATRIC: 562.34264
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli strain NCTC9091 PATRIC: 562.34264
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.75	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.503	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.437	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	60.555	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.302	no

Availability in culture collections External links

[Ref.: #45511]

Culture collection no.

CCUG 11393, NCDC H307b, ATCC 23980, NCTC 9091

[Ref.: #97796]

SI-ID 45737

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45511 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11393

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#97796

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45737.1 )

* These data were automatically processed and therefore are not curated

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Escherichia coli strain NCTC9091

Escherichia coli strain NCTC9091

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