Escherichia coli CIP 105186 is a mesophilic prokaryote that was isolated from Human,infantile gastro-enteritis.
mesophilic genome sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | - | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | - | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55589 | + | - | + | - | - | + | - | - | + | - | + | + | - | - | + | - | + | - | + | - | - | + | - | - | + | + | + | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Child | |
| #Host Body-Site | #Gastrointestinal tract | - | |
| #Infection | #Inflammation | - |
| 55589 | Sample typeHuman,infantile gastro-enteritis |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 41236_F02 assembly for Escherichia coli NCTC8007 | contig | 562 | 50.84 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 72.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 67.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 65.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 82.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.77 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 86.95 | no |
| 125438 | aerobic | aerobicⓘ | no | 58.69 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 74.86 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Glycomacropeptide Reduces Intestinal Epithelial Cell Barrier Dysfunction and Adhesion of Entero-Hemorrhagic and Entero-Pathogenic Escherichia coli in Vitro. | Feeney S, Ryan JT, Kilcoyne M, Joshi L, Hickey R. | Foods | 10.3390/foods6110093 | 2017 | ||
| Activation and deposition of human breast-milk complement C3 opsonins on serum sensitive Escherichia coli 0111. | Ogundele MO. | J Reprod Immunol | 10.1016/s0165-0378(00)00067-x | 2000 | ||
| Pathogenicity | Structure-function relationship of antibacterial synthetic peptides homologous to a helical surface region on human lactoferrin against Escherichia coli serotype O111. | Chapple DS, Mason DJ, Joannou CL, Odell EW, Gant V, Evans RW. | Infect Immun | 10.1128/iai.66.6.2434-2440.1998 | 1998 | |
| Proteome | A helical region on human lactoferrin. Its role in antibacterial pathogenesis. | Chapple DS, Joannou CL, Mason DJ, Shergill JK, Odell EW, Gant V, Evans RW. | Adv Exp Med Biol | 1998 | ||
| Pathogenicity | Antibacterial activity of peptides homologous to a loop region in human lactoferrin. | Odell EW, Sarra R, Foxworthy M, Chapple DS, Evans RW. | FEBS Lett | 10.1016/0014-5793(96)00168-8 | 1996 | |
| Structure and association of human lactoferrin peptides with Escherichia coli lipopolysaccharide. | Chapple DS, Hussain R, Joannou CL, Hancock RE, Odell E, Evans RW, Siligardi G. | Antimicrob Agents Chemother | 10.1128/aac.48.6.2190-2198.2004 | 2004 | ||
| Pathogenicity | Combination of antimicrobial and endotoxin-neutralizing activities of novel oleoylamines. | Zorko M, Majerle A, Sarlah D, Keber MM, Mohar B, Jerala R. | Antimicrob Agents Chemother | 10.1128/aac.49.6.2307-2313.2005 | 2005 | |
| Metabolism | Helicobacter pylori increases proliferation of gastric epithelial cells. | Fan XG, Kelleher D, Fan XJ, Xia HX, Keeling PW. | Gut | 10.1136/gut.38.1.19 | 1996 | |
| Pathogenicity | One of two human lactoferrin variants exhibits increased antibacterial and transcriptional activation activities and is associated with localized juvenile periodontitis. | Velliyagounder K, Kaplan JB, Furgang D, Legarda D, Diamond G, Parkin RE, Fine DH. | Infect Immun | 10.1128/iai.71.11.6141-6147.2003 | 2003 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #35789 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105186 |
| #55589 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42878 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68374 | Automatically annotated from API ID32E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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