Escherichia coli RM215C is a facultative anaerobe, mesophilic, Gram-negative prokaryote of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 39431 | negative | rod-shaped |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 39431 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 39431 | CIP Medium 3 | Medium recipe at CIP | |||
| 39431 | CIP Medium 72 | Medium recipe at CIP |
| 39431 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 39431 | 16947 ChEBI | citrate | - | carbon source | |
| 39431 | 4853 ChEBI | esculin | + | hydrolysis | |
| 39431 | 17234 ChEBI | glucose | + | fermentation | |
| 39431 | 17234 ChEBI | glucose | + | degradation | |
| 39431 | 17716 ChEBI | lactose | + | fermentation | |
| 39431 | 15792 ChEBI | malonate | - | assimilation | |
| 39431 | 29864 ChEBI | mannitol | + | fermentation | |
| 39431 | 17632 ChEBI | nitrate | + | reduction | |
| 39431 | 16301 ChEBI | nitrite | + | reduction | |
| 39431 | 132112 ChEBI | sodium thiosulfate | - | builds gas from |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 39431 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 39431 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 39431 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 39431 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 39431 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 39431 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 39431 | ornithine decarboxylase | - | 4.1.1.17 | |
| 39431 | oxidase | - | ||
| 39431 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 39431 | tryptophan deaminase | - | ||
| 39431 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 39431 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | PDT000619904.1 assembly for Escherichia coli ECOR-22 | contig | 562 | 35.2 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Natural DNA uptake by Escherichia coli. | Sinha S, Redfield RJ. | PLoS One | 10.1371/journal.pone.0035620 | 2012 | ||
| Naturally resident and exogenously applied T4-like and T5-like bacteriophages can reduce Escherichia coli O157:H7 levels in sheep guts. | Raya RR, Oot RA, Moore-Maley B, Wieland S, Callaway TR, Kutter EM, Brabban AD. | Bacteriophage | 10.4161/bact.1.1.14175 | 2011 | ||
| Phylogeny | Rapid and simple determination of the Escherichia coli phylogenetic group. | Clermont O, Bonacorsi S, Bingen E. | Appl Environ Microbiol | 10.1128/aem.66.10.4555-4558.2000 | 2000 | |
| Metabolism | Osmoregulatory systems of Escherichia coli: identification of betaine-carnitine-choline transporter family member BetU and distributions of betU and trkG among pathogenic and nonpathogenic isolates. | Ly A, Henderson J, Lu A, Culham DE, Wood JM. | J Bacteriol | 10.1128/jb.186.2.296-306.2004 | 2004 | |
| Metabolism | Yersiniabactin production by Pseudomonas syringae and Escherichia coli, and description of a second yersiniabactin locus evolutionary group. | Bultreys A, Gheysen I, de Hoffmann E. | Appl Environ Microbiol | 10.1128/aem.00119-06 | 2006 | |
| Genetics | Accessory DNA in the genomes of representatives of the Escherichia coli reference collection. | Hurtado A, Rodriguez-Valera F. | J Bacteriol | 10.1128/jb.181.8.2548-2554.1999 | 1999 | |
| Correlation of Rhs elements with Escherichia coli population structure. | Hill CW, Feulner G, Brody MS, Zhao S, Sadosky AB, Sandt CH. | Genetics | 10.1093/genetics/141.1.15 | 1995 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #39431 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106007 |
| #68382 | Automatically annotated from API zym . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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