Escherichia coli Seattle 1946 | DSM 1103, ATCC 25922, NCIB 12210, WDCM 00013, CCUG 17620, CCUG 7736, CCUG 21456

Strain identifier

BacDive ID: 4427

Type strain:

Species: Escherichia coli

Strain Designation: Seattle 1946

Culture col. no.: DSM 1103, ATCC 25922, NCIB 12210, WDCM 00013, CCUG 17620, CCUG 7736, CCUG 21456

Strain history: <- ATCC <- FDA, strain Seattle 1946 <- F. Schoenknecht

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Escherichia coli Seattle 1946 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical isolate.

antibiotic resistance
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Enterobacterales
	Family	Enterobacteriaceae
	Genus	Escherichia
	Species	Escherichia coli
	Full Scientific Name (PNU)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

Bacillus coli

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #552]

Culture medium

Nutrient agar (NA)

[Ref.: #552]

Culture medium growth

[Ref.: #552]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41789]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41789]

Culture medium growth

[Ref.: #41789]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #552]			growth	37 ̊C
[Ref.: #41789]			growth	30 ̊C

[Ref.: #552]	Temperature range	mesophilic
[Ref.: #41789]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Test 5

Test 6

Test 7

Reference

[Ref.: #552]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
20
28
24
18
26
34
34
30
28
28-30
22-24
24-26
resistant0
10
resistant0
32-34
34
14
28
24
resistant0
14-16
22
20-22
22
34
resistant0
32
32
6
resistant0
resistant0
resistant0
24

[Ref.: #552]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18-20
30
24-26
18
26-28
36
34-36
34
28-30
30
24
24
8
10
resistant0
36
38
14
28-30
24
resistant0
16
22
20-22
22
34
resistant0
34
34-36
6-8
resistant0
resistant0
resistant0
26

[Ref.: #552]
Mueller-Hinton Agar
33
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18
30
24
20
28
38
38
34
30
24-26
22
22
resistant0
10
8
40
40
14-16
32
26
resistant0
16
22
18
24-26
36
resistant0
32-34
38-40
resistant0
resistant0
resistant0
resistant0
26

[Ref.: #552]
Mueller-Hinton Agar
30
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18-20
30
26
20
30
38
38
36
30
30
24
24
resistant0
14
resistant0
40-42
42
14
30-32
24-26
resistant0
16
24
20
24
38
resistant0
32
40
6
resistant0
resistant0
resistant0
26-28

[Ref.: #552]
Mueller-Hinton Agar
37


yes
Inhibition zone diameter in mm
resistant0
resistant0
18
30
28
22
32-34
40
40
38
30-32
28
24-26
24-26
10
12-14
resistant0
38
38
16-18
30
26
resistant0
16
24-26
20
26
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.

[Ref.: #552]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18
28
24
18
26
34
34
34
26
24
20
20
resistant0
6
resistant0
32
32
14
28
24
resistant0
16
20
18
20
36
resistant0
32-34
30
6
resistant0
6
resistant0
26

[Ref.: #552]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
18
28
24
18
26
34
34
34
26
24
20
20
resistant0
6
resistant0
32
32
14
28
24
resistant0
16
20
18
20
36
resistant0
32-34
30
6
resistant0
6
resistant0
26

Only first 15 entries are displayed. Click here to see all.

[Ref.: #552]

Name of produced compound

extended spectrum ß-lactamase ESBL

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46634]

Fatty acid	Percentage	ECL
C16:1 ω7c	24.5	15.819
C16:0	18.9	16
C18:1 ω7c /12t/9t	12.9	17.824
C14:0 3OH/C16:1 ISO I	10.2	15.485
C14:0	8.3	14
C15:0	8.1	15
C17:0 CYCLO	5.3	16.888
C12:0	4.1	12
C13:0 3OH/C15:1 i I/H	2.3	14.469
C17:0	1.8	17
C13:0	1.7	13
Unidentified	1.1	16.301
C17:1 ω8c	0.9	16.792

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #552]	10599	+	+	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	10399	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9640	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9639	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9637	-	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9636	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9635	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9632	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9631	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9630	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #552]	9629	+	-	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #552]	Sample type/isolated from	clinical isolate

[Ref.: #46634]	Sample type/isolated from	Human

Isolation sources categories

#Infection

#Medical environment

#Clinic

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #552]	Pathogenicity (human)	yes
[Ref.: #552]	Pathogenicity (animal)	yes
[Ref.: #552]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Escherichia coli strain ATCC 25922 16S ribosomal RNA gene, partial sequence	DQ360844	1532	ENA	562 tax ID	*
[Ref.: #20218]	Escherichia coli strain ATCC 25922 16S ribosomal RNA gene, partial sequence	DQ683069	1101	ENA	562 tax ID	*
[Ref.: #20218]	Escherichia coli partial 16S rRNA gene, strain ATCC 25922	FM207087	392	ENA	562 tax ID	*
[Ref.: #20218]	Escherichia coli strain ATCC 25922 16S ribosomal RNA gene, partial sequence	KC429776	1355	ENA	562 tax ID	*
[Ref.: #20218]	E.coli (ATCC 25922) gene for 16S rRNA	X80724	1452	ENA	562 tax ID	*
[Ref.: #552]	Escherichia coli partial 16S rRNA gene, strain DSM 1103	HE978270	1501	ENA	562 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_000743255	complete	GenBank	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_012974805	complete	GenBank	562 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_001997075	scaffold	GenBank	562 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_007844355	scaffold	GenBank	562 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922-1	GCA_007844345	scaffold	GenBank	562 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922-2	GCA_007844295	scaffold	GenBank	562 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_000401755	contig	GenBank	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	GCA_004151095	contig	GenBank	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	1322345.19	complete	PATRIC	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	1322345.34	plasmid	PATRIC	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	1322345.39	wgs	PATRIC	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	1322345.3	wgs	PATRIC	1322345 tax ID
[Ref.: #66792]	Escherichia coli ATCC 25922	1322345.33	plasmid	PATRIC	1322345 tax ID
[Ref.: #66792]	Escherichia coli strain ATCC 25922	562.50572	wgs	PATRIC	562 tax ID
[Ref.: #66792]	Escherichia coli strain ATCC 25922	562.15133	wgs	PATRIC	562 tax ID
[Ref.: #66792]	Escherichia coli strain ATCC 25922-1	562.50571	wgs	PATRIC	562 tax ID
[Ref.: #66792]	Escherichia coli strain ATCC 25922-2	562.50570	wgs	PATRIC	562 tax ID

Availability in culture collectionsExternal links

[Ref.: #552]

Culture collection no.

DSM 1103, ATCC 25922, NCIB 12210, WDCM 00013, CCUG 17620, CCUG 7736, CCUG 21456

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52432, 52431, 120164, 866234

References

#552	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1103

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41789 ; Curators of the CIP;
#46634 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17620

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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