Escherichia coli CCUG 62462 is an aerobe, mesophilic prokaryote that was isolated from Human urine,2-months-old boy.
aerobe mesophilic genome sequence| @ref 20215 |
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|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 62851 | positive | growth | 30 | mesophilic |
| 62851 | Oxygen toleranceaerobe |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Male | |
| #Host Body Product | #Fluids | #Urine | |
| #Infection | #Patient | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 62851 | Human urine,2-months-old boy | 2008 | Gothenburg | Sweden | SWE | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM166105v2 assembly for Escherichia coli CCUG 62462 | contig | 562 | 55.3 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 86.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 64.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 74.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 83.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.00 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 88.50 | no |
| 125438 | aerobic | aerobicⓘ | no | 68.29 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 74.93 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Draft Genome Sequence of Extended-Spectrum-beta-Lactamase-Producing Escherichia coli Strain CCUG 62462, Isolated from a Urine Sample. | Johnning A, Jakobsson HE, Boulund F, Salva-Serra F, Moore ER, Ahren C, Karami N, Kristiansson E. | Genome Announc | 10.1128/genomea.01382-16 | 2016 | ||
| Metabolism | Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics. | Boulund F, Karlsson R, Gonzales-Siles L, Johnning A, Karami N, Al-Bayati O, Ahren C, Moore ERB, Kristiansson E. | Mol Cell Proteomics | 10.1074/mcp.m116.061721 | 2017 | |
| Proteome | Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach. | Alves G, Ogurtsov A, Karlsson R, Jaen-Luchoro D, Pineiro-Iglesias B, Salva-Serra F, Andersson B, Moore ERB, Yu YK. | J Am Soc Mass Spectrom | 10.1021/jasms.1c00347 | 2022 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #62851 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62462 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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