Strain identifier
version 8.1 (current version)
General
@ref: 62851
BacDive-ID: 156536
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Escherichia coli CCUG 62462 is an aerobe, mesophilic, motile bacterium that was isolated from Human urine,2-months-old boy.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
doi: 10.13145/bacdive156536.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 62851
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.545 | |
| 69480 | 99.994 | negative |
Culture and growth conditions
culture temp
- @ref: 62851
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62851
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.81 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62851
- sample type: Human urine,2-months-old boy
- sampling date: 2008
- geographic location: Gothenburg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | #Urine |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Escherichia coli CCUG 62462 | GCA_001661055 | contig | ncbi | 562 |
| 66792 | Escherichia coli strain CCUG 62462 | 562.10885 | wgs | patric | 562 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.276 | no |
| anaerobic | no | 95.054 | yes |
| halophile | no | 90.267 | no |
| spore-forming | no | 94.483 | no |
| glucose-util | yes | 93.946 | no |
| thermophile | no | 99.435 | yes |
| aerobic | yes | 87.949 | no |
| motile | yes | 90.161 | no |
| flagellated | no | 56.533 | no |
| glucose-ferment | yes | 93.494 | no |
External links
@ref: 62851
culture collection no.: CCUG 62462
straininfo link
- @ref: 109757
- straininfo: 411240
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62851 | Curators of the CCUG | https://www.ccug.se/strain?id=62462 | Culture Collection University of Gothenburg (CCUG) (CCUG 62462) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411240.1 |