Escherichia coli CCUG 11320 is a prokaryote that was isolated from Human urine.
genome sequence| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 90.5 |
| 45440 | Sample typeHuman urine |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 37419_G02 assembly for Escherichia coli NCTC9014 | contig | 562 | 43.77 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 66.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 86.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 90.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.80 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.45 | no |
| 125438 | aerobic | aerobicⓘ | no | 59.94 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 76.29 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Long-chain alkanoylcholines, a new category of soft antimicrobial agents that are enzymatically degradable. | Ahlstrom B, Chelminska-Bertilsson M, Thompson RA, Edebo L. | Antimicrob Agents Chemother | 10.1128/aac.39.1.50 | 1995 | |
| Isolation, Characterization, and Complete Genome Sequence of Escherichia Phage KIT06 Which Infects Nalidixic Acid-Resistant Escherichia coli. | Han NS, Harada M, Pham-Khanh NH, Kamei K. | Antibiotics (Basel) | 10.3390/antibiotics13070581 | 2024 | |
| Chemical and Biological Studies of Achillea setacea Herba Essential Oil-First Report on Some Antimicrobial and Antipathogenic Features. | Marinas IC, Oprea E, Gaboreanu DM, Gradisteanu Pircalabioru G, Buleandra M, Nagoda E, Badea IA, Chifiriuc MC. | Antibiotics (Basel) | 10.3390/antibiotics12020371 | 2023 | |
| Characterization of the Shigella serotype D (S. sonnei) O polysaccharide and the enterobacterial R1 lipopolysaccharide core by use of mouse monoclonal antibodies. | Viret JF, Bruderer U, Lang AB. | Infect Immun | 10.1128/iai.60.7.2741-2747.1992 | 1992 | |
| Rapid detection of members of the family Enterobacteriaceae by a monoclonal antibody. | Levasseur S, Husson MO, Leitz R, Merlin F, Laurent F, Peladan F, Drocourt JL, Leclerc H, Van Hoegaerden M. | Appl Environ Microbiol | 10.1128/aem.58.5.1524-1529.1992 | 1992 | |
| Immune responses of specific pathogen-free and gnotobiotic mice to antigens of indigenous and nonindigenous microorganisms. | Berg RD, Savage DC. | Infect Immun | 10.1128/iai.11.2.320-329.1975 | 1975 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #45440 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11320 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive142183.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data