Escherichia coli CCUG 11307 is a bacterium of the family Enterobacteriaceae.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 96.2 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 39304_B01 assembly for Escherichia coli NCTC9005 | contig | 562 | 78.42 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 86.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 64.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 88.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.60 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.95 | no |
| 125438 | aerobic | aerobicⓘ | no | 68.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 74.35 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Production and purification of higher molecular weight chondroitin by metabolically engineered Escherichia coli K4 strains. | D'ambrosio S, Alfano A, Cassese E, Restaino OF, Barbuto Ferraiuolo S, Finamore R, Cammarota M, Schiraldi C, Cimini D. | Sci Rep | 10.1038/s41598-020-70027-9 | 2020 | |
| Metabolism | Microbioreactor (micro-Matrix) potential in aerobic and anaerobic conditions with different industrially relevant microbial strains. | D'ambrosio S, Ventrone M, Alfano A, Schiraldi C, Cimini D. | Biotechnol Prog | 10.1002/btpr.3184 | 2021 | |
| Metabolism | Homologous overexpression of RfaH in E. coli K4 improves the production of chondroitin-like capsular polysaccharide. | Cimini D, De Rosa M, Carlino E, Ruggiero A, Schiraldi C. | Microb Cell Fact | 10.1186/1475-2859-12-46 | 2013 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #45427 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11307 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive142170.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data