Escherichia coli CCUG 58987 is an aerobe bacterium of the family Enterobacteriaceae.
aerobe genome sequence Bacteria| @ref 20215 |
Last LPSN update
2026-02-09 11:37:40 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | - | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | + | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61794 | - | - | + | - | - | + | + | - | + | - | + | + | - | - | + | - | + | - | + | - | - | + | - | - | + | + | + | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | IMG accession | NCBI tax ID | Score | BV-BRC accession | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM154463v1 assembly for Escherichia coli str. K-12 substr. MG1655 | complete | GCA_001544635   | 2962614472  | 511145 | 99.35 | | |
| 124043 | ASM976764v1 assembly for Escherichia coli str. K-12 substr. MG1655 | contig | GCA_009767645 | 511145 | 74.58 | 511145.792  | | |
| 124043 | ASM3287899v1 assembly for Escherichia coli str. K-12 substr. MG1655 | complete | GCA_032878995 | 511145 | 49.87 | 511145.1319 | | |
| 124043 | PDT001465282.1 assembly for Escherichia coli | contig | GCA_025844115 | 562 | 33.2 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. | Sekiguchi Y, Teramoto K, Tourlousse DM, Ohashi A, Hamajima M, Miura D, Yamada Y, Iwamoto S, Tanaka K. | Genome Biol | 10.1186/s13059-023-03096-4 | 2023 | |
| Safety of lacto-N-tetraose (LNT) produced by a derivative strain (Escherichia coli K-12 MG1655 INB_LNT_01) of E. coli K-12 MG1655 (ATCC 700926) as a novel food pursuant to Regulation (EU) 2015/2283. | EFSA Panel on Nutrition, Novel Foods and Food Allergens (NDA), Turck D, Bohn T, Camara M, Castenmiller J, De Henauw S, Jos A, Maciuk A, Mangelsdorf I, McNulty B, Naska A, Pentieva K, Siani A, Thies F, Aguilera-Gomez M, Cubadda F, Frenzel T, Heinonen M, Marchelli R, McArdle HJ, Neuhauser-Berthold M, Poulsen M, Prieto Maradona M, Schlatter JR, Siskos A, van Loveren H, Colombo P, Rodriguez Fernandez P, Noriega Fernandez E, Hirsch-Ernst KI. | EFSA J | 10.2903/j.efsa.2025.9610 | 2025 | | |
| A New Bromelain-Based Polyenzymatic Complex Plus N-Acetylcysteine: A Promising Approach for the Treatment of Urinary Tract Infections. | Recinella L, Pinti M, Di Lodovico S, Brenciani A, Giovanetti E, Diban F, Di Giulio M, Brunetti L, Leone S. | Int J Mol Sci | 10.3390/ijms26104639 | 2025 | | |
| Metabolism | Engineering a Robust Escherichia coli W Platform for Scalable Production of Flavonoid-O-Glucosides. | Carranza-Saavedra D, Torres-Bacete J, Bouju E, Nuccio S, Sordon S, Huszcza E, Poplonski J, de Vaumas R, Nogales J. | Microb Biotechnol | 10.1111/1751-7915.70226 | 2025 | |
| Pathogenicity | Beneficial Effects Induced by a Proprietary Blend of a New Bromelain-Based Polyenzymatic Complex Plus N-Acetylcysteine in Urinary Tract Infections: Results from In Vitro and Ex Vivo Studies. | Recinella L, Pinti M, Libero ML, Di Lodovico S, Veschi S, Piro A, Generali D, Acquaviva A, Nilofar N, Orlando G, Chiavaroli A, Ferrante C, Menghini L, Di Simone SC, Brunetti L, Di Giulio M, Leone S. | Antibiotics (Basel) | 10.3390/antibiotics13100985 | 2024 | |
| Enzymology | Naphthoquinone preferentially pairs with non-proton-pumping NADH dehydrogenase for respiratory electron transport. | Khairnar SV, Patil AV, Karvannan L, Anand A. | PLoS Genet | 10.1371/journal.pgen.1011877 | 2025 | |
| Detection of AcrAB efflux pump mediated ciprofloxacin resistance in Escherichia coli and Klebsiella pneumoniae in Nepal. | Kharel S, Rimal S, Neupane B, Sharma BK, Bashyal NS, Shah Y, Chalise BS, Rawal M, Tun MMN, Dumre SP. | BMC Infect Dis | 10.1186/s12879-025-11555-5 | 2025 | | |
| Dioxygen reductase heterogeneity is crucial for robust aerobic growth physiology of Escherichia coli. | Patil AV, Shirsath AM, Anand A. | iScience | 10.1016/j.isci.2024.111498 | 2024 | | |
| Uropathogenic Escherichia coli (UPEC) that hides its identity: features of LC2 and EC73 strains from recurrent urinary tract infections. | Maurizi L, Musleh L, Brunetti F, Conte AL, Riccioli A, Sideri S, Ammendolia MG, Uccelletti D, Schifano E, De Angelis M, Ianiro G, Niro A, Cutone A, Conte MP, Longhi C. | BMC Microbiol | 10.1186/s12866-025-04287-8 | 2025 | | |
| Escherichia coli in Brazilian Poultry Fecal Samples: Co-Carriage of Fosfomycin and ESBL Resistance. | Juscele F, Saidenberg ABS, Christoffersen LEB, Edslev SM, Hallstrom S, Nacarato JR, Barbosa FB, Cunha MP, Esposito F, Lincopan NH, Stegger M, Knobl T. | Antibiotics (Basel) | 10.3390/antibiotics14030269 | 2025 | | |
| Prediction of Influence of Environmental Factors on the Toxicity of Pentachlorophenol on E. coli-Based Bioassays. | Jouanneau S, Thouand G. | Sensors (Basel) | 10.3390/s25103215 | 2025 | | |
| Environmental concentrations of copper and iron can alter the evolution of antimicrobial resistance of E. coli against ciprofloxacin and doxycycline. | Sutradhar I, Kalyan P, Chukwu K, Abia ALK, Mbanga J, Essack S, Hamer DH, Zaman MH. | Front Microbiol | 10.3389/fmicb.2025.1539807 | 2025 | | |
| Effects of microplastic concentration, composition, and size on Escherichia coli biofilm-associated antimicrobial resistance. | Gross N, Muhvich J, Ching C, Gomez B, Horvath E, Nahum Y, Zaman MH. | Appl Environ Microbiol | 10.1128/aem.02282-24 | 2025 | | |
| Design, Synthesis, and Application of Carbon Dots With Synergistic Antibacterial Activity. | Qie X, Zan M, Gui P, Chen H, Wang J, Lin K, Mei Q, Ge M, Zhang Z, Tang Y, Dong WF, Song Y. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.894100 | 2022 | | |
| Carvacrol and Thymol, a Synergistic Antimicrobial Activity Against Bacterial and Candida Species. | Radocchia G, Giammarino A, Barberini S, Verdolini L, De Angelis M, Simonetti G, Pantanella F, Schippa S, Angiolella L. | Microbiologyopen | 10.1002/mbo3.70089 | 2025 | | |
| Cold atmospheric plasma: Its time-dependent effects on the elimination of bacterial colony on periodontal manual scalers. | Viswanadh V, Gaikwad RP, Kar R, Nagar V, Dhalkari CD, Banodkar A, Maiti N. | J Indian Soc Periodontol | 10.4103/jisp.jisp_309_22 | 2023 | | |
| Lactococcus lactis HkyuLL 10 suppresses colorectal tumourigenesis and restores gut microbiota through its generated alpha-mannosidase. | Su ACY, Ding X, Lau HCH, Kang X, Li Q, Wang X, Liu Y, Jiang L, Lu Y, Liu W, Ding Y, Cheung AH, To KF, Yu J. | Gut | 10.1136/gutjnl-2023-330835 | 2024 | | |
| Gut microbial production of imidazole propionate drives Parkinson's pathologies. | Park H, Cheon J, Kim H, Kim J, Kim J, Shin JY, Kim H, Ryu G, Chung IY, Kim JH, Kim D, Zhang Z, Wu H, Beck KR, Backhed F, Kim HJ, Lee Y, Koh A. | Nat Commun | 10.1038/s41467-025-63473-4 | 2025 | | |
| Silver and Copper Nanoparticles Induce Oxidative Stress in Bacteria and Mammalian Cells. | Ameh T, Gibb M, Stevens D, Pradhan SH, Braswell E, Sayes CM. | Nanomaterials (Basel) | 10.3390/nano12142402 | 2022 | | |
| DNA methylation affects gene expression but not global chromatin structure in Escherichia coli. | Morgan WJ, Amemiya HM, Freddolino L. | J Bacteriol | 10.1128/jb.00540-24 | 2025 | | |
| Enzymology | Comparison of the mechanism of antimicrobial action of the gold(I) compound auranofin in Gram-positive and Gram-negative bacteria. | Quadros Barse L, Ulfig A, Varatnitskaya M, Vazquez-Hernandez M, Yoo J, Imann AM, Lupilov N, Fischer M, Becker K, Bandow JE, Leichert LI. | Microbiol Spectr | 10.1128/spectrum.00138-24 | 2024 | |
| High-Efficiency Interdigitated Electrode-Based Droplet Merger for Enabling Error-Free Droplet Microfluidic Systems. | Han JJ, Zhang H, Li Y, Huang C, Guzman AR, Han A. | Anal Chem | 10.1021/acs.analchem.4c02376 | 2024 | | |
| Lactobacillus intestinalis facilitates tumor-derived CCL5 to recruit dendritic cell and suppress colorectal tumorigenesis. | Sun Y, Wang Q, Jiang Y, He J, Jia D, Luo M, Shen W, Wang Q, Qi Y, Lin Y, Zhang Y, Wang L, Wang L, Chen S, Fan L. | Gut Microbes | 10.1080/19490976.2024.2449111 | 2025 | | |
| Metabolism | Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine. | Meza-Perez S, Liu M, Silva-Sanchez A, Morrow CD, Eipers PG, Lefkowitz EJ, Ptacek T, Scharer CD, Rosenberg AF, Hill DD, Arend RC, Gray MJ, Randall TD. | Cell Host Microbe | 10.1016/j.chom.2024.06.003 | 2024 | |
| Bimodal Imaging of Tumors via Genetically Engineered Escherichia coli. | Zhang L, Wang Y, Li D, Wang L, Li Z, Yan F. | Pharmaceutics | 10.3390/pharmaceutics14091804 | 2022 | | |
| Genetics | Reducing competition between msd and genomic DNA improves retron editing efficiency. | Ni Y, Wang Y, Shi X, Yu F, Ruan Q, Tian N, He J, Wang X. | EMBO Rep | 10.1038/s44319-024-00311-6 | 2024 | |
| Metabolism | gltB encoding glutamate synthase is involved in persister and biofilm formation and virulence in Staphylococcus aureus. | Wen X, Tang T, Bao T, Xu T, An B, Zhang Y, Han J. | Microbiol Spectr | 10.1128/spectrum.00511-25 | 2025 | |
| An Approach to Improve Energy Efficiency during Antimicrobial Blue Light Inactivation: Application of Pulse-Width Modulation Dimming to Balance Irradiance and Irradiation Time. | Zhang W, Su P, Ma J, Tan Y, Gong M, Ma L. | Antibiotics (Basel) | 10.3390/antibiotics12091431 | 2023 | | |
| Systems biology approach for enhancing limonene yield by re-engineering Escherichia coli. | Khanijou JK, Hee YT, Scipion CPM, Chen X, Selvarajoo K. | NPJ Syst Biol Appl | 10.1038/s41540-024-00440-7 | 2024 | | |
| First-passage-time statistics of growing microbial populations carry an imprint of initial conditions. | Jones EW, Derrick J, Nisbet RM, Ludington WB, Sivak DA. | Sci Rep | 10.1038/s41598-023-48726-w | 2023 | | |
| Genetics | Phenotypic and Genotypic Comparison of Antimicrobial-Resistant Variants of Escherichia coli and Salmonella Typhimurium Isolated from Evolution Assays with Antibiotics or Commercial Products Based on Essential Oils. | Merino N, Berdejo D, Pagan E, Girard C, Kerros S, Spinozzi E, Pagan R, Garcia-Gonzalo D. | Pharmaceuticals (Basel) | 10.3390/ph16101443 | 2023 | |
| Fluorescence-based protocol for revealing cellular arrangement in biofilms. | Puri D, Fang X, Allison KR. | STAR Protoc | 10.1016/j.xpro.2023.102270 | 2023 | | |
| Enzymology | Auranofin induces disulfide bond-mimicking S-Au adducts in protein thiol pairs. | Quadros Barse L, Duchting P, Lupilov N, Bandow JE, Kramer U, Leichert LI. | J Biol Chem | 10.1016/j.jbc.2025.108159 | 2025 | |
| Metabolism | Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications. | Anand A, Olson CA, Sastry AV, Patel A, Szubin R, Yang L, Feist AM, Palsson BO. | Cell Rep | 10.1016/j.celrep.2021.108961 | 2021 | |
| Enhancing the Production of Pinene in Escherichia coli by Using a Combination of Shotgun, Product-Tolerance and I-SceI Cleavage Systems. | Huang MY, Wang WY, Liang ZZ, Huang YC, Yi Y, Niu FX. | Biology (Basel) | 10.3390/biology11101484 | 2022 | | |
| Enzymology | Unraveling the Gentamicin Drug Product Complexity Reveals Variation in Microbiological Activities and Nephrotoxicity. | Bulman ZP, Cirz R, Hildebrandt D, Kane T, Rosario Z, Wlasichuk K, Park M, Andrews LD. | Antimicrob Agents Chemother | 10.1128/aac.00533-20 | 2020 | |
| Metabolic changes associated with polysaccharide utilization reduce susceptibility to some beta-lactams in Bacteroides thetaiotaomicron. | Nilson R, Penumutchu S, Pagano FS, Belenky P. | mSphere | 10.1128/msphere.00103-24 | 2024 | | |
| Metabolism | Lack of induced mutagenesis in E. coli or human lymphoblast cell line upon long-term sub-culturing in medium from irradiated meat. | Hajare SN, Tripathi J, Gautam S. | Int J Radiat Biol | 10.1080/09553002.2017.1398434 | 2017 | |
| Uncovering lipopolysaccharide regulation in bacteria via the critical lipid binding tunnel of YciS/YciM. | Yan L, Dong H, Li H, Liu X, Deng Z, Dong C, Zhang Z. | iScience | 10.1016/j.isci.2022.104988 | 2022 | | |
| Lactobacillus rhamnosus GG Promotes Recovery of the Colon Barrier in Septic Mice through Accelerating ISCs Regeneration. | Chen L, Li S, Peng C, Gui Q, Li J, Xu Z, Yang Y. | Nutrients | 10.3390/nu15030672 | 2023 | | |
| Pleiotropic cellular responses underlying antibiotic tolerance in Campylobacter jejuni. | Cho E, Kim J, Hur JI, Ryu S, Jeon B. | Front Microbiol | 10.3389/fmicb.2024.1493849 | 2024 | | |
| utPCR: A Strategy for the Highly Specific and Absolutely Quantitative Detection of Single Molecules within Only Minutes. | Wang R, Liu Y, Chen S, Bai L, Guo K, Pang Y, Qian F, Li Y, Ding L, Wang Y. | Biosensors (Basel) | 10.3390/bios13100910 | 2023 | | |
| Accessing the In Vivo Efficiency of Clinically Isolated Phages against Uropathogenic and Invasive Biofilm-Forming Escherichia coli Strains for Phage Therapy. | Sanmukh SG, Admella J, Moya-Anderico L, Feher T, Arevalo-Jaimes BV, Blanco-Cabra N, Torrents E. | Cells | 10.3390/cells12030344 | 2023 | | |
| Competitive growth kinetics of Campylobacter jejuni, Escherichia coli O157:H7 and Listeria monocytogenes with enteric microflora in a small-intestine model. | Fuchisawa Y, Abe H, Koyama K, Koseki S. | J Appl Microbiol | 10.1111/jam.15294 | 2022 | | |
| Development and Automation of a Bacterial Biosensor to the Targeting of the Pollutants Toxic Effects by Portable Raman Spectrometer. | Bandeliuk O, Assaf A, Bittel M, Durand MJ, Thouand G. | Sensors (Basel) | 10.3390/s22124352 | 2022 | | |
| Interplay of Mycobacterium abscessus and Pseudomonas aeruginosa in experimental models of coinfection: Biofilm dynamics and host immune response. | Campo-Perez V, Julian E, Torrents E. | Virulence | 10.1080/21505594.2025.2493221 | 2025 | | |
| Na-TiNT Nanocrystals: Synthesis, Characterization, and Antibacterial Properties. | Agressott EVH, Oliveira MM, Freitas TS, Pereira RLS, Silva ARP, Silva ARP, Cruz RP, Santos ATL, Teixeira AMR, Oliveira TG, da Silva JH, Paschoal AR, Viana BC, Freire PTC, Siyadatpanah A, Wilairatana P, Coutinho HDM. | Bioinorg Chem Appl | 10.1155/2022/2302943 | 2022 | | |
| Hyperpolarized 13C NMR Reveals Pathway Regulation in Lactococcus lactis and Metabolic Similarities and Differences Across the Tree of Life. | Meier S, Zahid ALN, Jorgensen LR, Wang KC, Jensen PR, Jensen PR. | Molecules | 10.3390/molecules29174133 | 2024 | | |
| Transcriptome | Intrahepatic Microbial Heterogeneity in Multifocal Hepatocellular Carcinoma and Its Association with Host Genomic and Transcriptomic Alterations. | Lu Y, Xu L, Chen W, Liu W, Zhang Y, Zhou Q, Wang N, Zhang Y, Bai H, Xu S, Huang P, Fu K, Xie W, Liu X, Wang X, Wong CC, Kuang M, Yu J. | Cancer Discov | 10.1158/2159-8290.cd-24-1259 | 2025 | |
| Nanotechnology in combating biofilm: A smart and promising therapeutic strategy. | Mohanta YK, Chakrabartty I, Mishra AK, Chopra H, Mahanta S, Avula SK, Patowary K, Ahmed R, Mishra B, Mohanta TK, Saravanan M, Sharma N. | Front Microbiol | 10.3389/fmicb.2022.1028086 | 2022 | | |
| Bovine Rectoanal Junction In Vitro Organ Culture Model System to Study Shiga Toxin-Producing Escherichia coli Adherence. | Kudva IT, Biernbaum EN, Cassmann ED, Palmer MV. | Microorganisms | 10.3390/microorganisms11051289 | 2023 | | |
| Anti-biofilm activity of caffeine against uropathogenic E. coli is mediated by curli biogenesis. | Rathi B, Gupta S, Kumar P, Kesarwani V, Dhanda RS, Kushwaha SK, Yadav M. | Sci Rep | 10.1038/s41598-022-23647-2 | 2022 | | |
| High Resolution Melt Assays to Detect and Identify Vibrio parahaemolyticus, Bacillus cereus, Escherichia coli, and Clostridioides difficile Bacteria. | Bender AC, Faulkner JA, Tulimieri K, Boise TH, Elkins KM. | Microorganisms | 10.3390/microorganisms8040561 | 2020 | | |
| Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. | Anand A, Patel A, Chen K, Olson CA, Phaneuf PV, Lamoureux C, Hefner Y, Szubin R, Feist AM, Palsson BO. | Nat Commun | 10.1038/s41467-022-30877-5 | 2022 | | |
| Lactobacillus gallinarum modulates the gut microbiota and produces anti-cancer metabolites to protect against colorectal tumourigenesis. | Sugimura N, Li Q, Chu ESH, Lau HCH, Fong W, Liu W, Liang C, Nakatsu G, Su ACY, Coker OO, Wu WKK, Chan FKL, Yu J. | Gut | 10.1136/gutjnl-2020-323951 | 2021 | | |
| Host-bacteriome transplants of the schistosome snail host Biomphalaria glabrata reflect species-specific associations. | Schols R, Vanoverberghe I, Huyse T, Decaestecker E. | FEMS Microbiol Ecol | 10.1093/femsec/fiad101 | 2023 | | |
| Synergistic Inactivation of Bacteria Using a Combination of Erythorbyl Laurate and UV Type-A Light Treatment. | Chang Y, Bai J, Yu H, Chang PS, Nitin N. | Front Microbiol | 10.3389/fmicb.2021.682900 | 2021 | | |
| Genetics | Recent advances of Cas12a applications in bacteria. | Meliawati M, Schilling C, Schmid J. | Appl Microbiol Biotechnol | 10.1007/s00253-021-11243-9 | 2021 | |
| The impact of zinc pre-exposure on ciprofloxacin resistance development in E. coli. | Suprenant MP, Ching C, Gross N, Sutradhar I, Anderson JE, El Sherif N, Zaman MH. | Front Microbiol | 10.3389/fmicb.2024.1491532 | 2024 | | |
| Metabolism | Reconstruction of metabolic pathway for isobutanol production in Escherichia coli. | Noda S, Mori Y, Oyama S, Kondo A, Araki M, Shirai T. | Microb Cell Fact | 10.1186/s12934-019-1171-4 | 2019 | |
| Animal and bacterial viruses share conserved mechanisms of immune evasion. | Hobbs SJ, Nomburg J, Doudna JA, Kranzusch PJ. | Cell | 10.1016/j.cell.2024.07.057 | 2024 | | |
| Pathogenicity | Identification of Multiple Low-Level Resistance Determinants and Coselection of Motility Impairment upon Sub-MIC Ceftriaxone Exposure in Escherichia coli. | Ching C, Zaman MH. | mSphere | 10.1128/msphere.00778-21 | 2021 | |
| Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments. | Westover C, Rahmatulloev S, Danko D, Afshin EE, O'Hara NB, Ounit R, Bezdan D, Mason CE. | Genes (Basel) | 10.3390/genes14010085 | 2022 | | |
| Targeting of Uropathogenic Escherichia coli papG gene using CRISPR-dot nanocomplex reduced virulence of UPEC. | Gupta S, Kumar P, Rathi B, Verma V, Dhanda RS, Devi P, Yadav M. | Sci Rep | 10.1038/s41598-021-97224-4 | 2021 | | |
| Virulence Characteristics and Antibiotic Resistance Profiles of Shiga Toxin-Producing Escherichia coli Isolates from Diverse Sources. | Rubab M, Oh DH. | Antibiotics (Basel) | 10.3390/antibiotics9090587 | 2020 | | |
| Glycan profiling of the gut microbiota by Glycan-seq. | Oinam L, Minoshima F, Tateno H. | ISME Commun | 10.1038/s43705-021-00084-2 | 2022 | | |
| Pathogenicity | Diversity and Local Coadaptation of Escherichia coli and Coliphages From Small Ruminants. | Molina F, Simancas A, Tabla R, Gomez A, Roa I, Rebollo JE. | Front Microbiol | 10.3389/fmicb.2020.564522 | 2020 | |
| Anti-Quorum-Sensing Potential of Ethanolic Extracts of Aromatic Plants from the Flora of Cyprus. | Panayi T, Sarigiannis Y, Mourelatou E, Hapeshis E, Papaneophytou C. | Plants (Basel) | 10.3390/plants11192632 | 2022 | | |
| Evidence of a possible multicellular life cycle in Escherichia coli. | Puri D, Fang X, Allison KR. | iScience | 10.1016/j.isci.2022.105795 | 2023 | | |
| Imaging of tumor colonization by Escherichia coli using 18F-FDS PET. | Kang SR, Jo EJ, Nguyen VH, Zhang Y, Yoon HS, Pyo A, Kim DY, Hong Y, Bom HS, Min JJ. | Theranostics | 10.7150/thno.42121 | 2020 | | |
| Lactobacillus acidophilus suppresses non-alcoholic fatty liver disease-associated hepatocellular carcinoma through producing valeric acid. | Lau HC, Zhang X, Ji F, Lin Y, Liang W, Li Q, Chen D, Fong W, Kang X, Liu W, Chu ES, Ng QW, Yu J. | EBioMedicine | 10.1016/j.ebiom.2023.104952 | 2024 | | |
| Nosiheptide Harbors Potent In Vitro and Intracellular Inhbitory Activities against Mycobacterium tuberculosis. | Yu X, Zhu R, Geng Z, Kong Y, Wang F, Dong L, Zhao L, Xue Y, Ma X, Huang H. | Microbiol Spectr | 10.1128/spectrum.01444-22 | 2022 | | |
| Metabolism | Newly identified genetic variations in common Escherichia coli MG1655 stock cultures. | Freddolino L, Amini S, Tavazoie S. | J Bacteriol | 10.1128/jb.06087-11 | 2012 | |
| Pathogenicity | Development and selection of low-level multi-drug resistance over an extended range of sub-inhibitory ciprofloxacin concentrations in Escherichia coli. | Ching C, Zaman MH. | Sci Rep | 10.1038/s41598-020-65602-z | 2020 | |
| Impact of Target Turnover on the Translation of Drug-Target Residence Time to Time-Dependent Antibacterial Activity. | Basu R, Wang N, Basak S, Daryaee F, Babar M, Allen EK, Walker SG, Haley JD, Tonge PJ. | ACS Infect Dis | 10.1021/acsinfecdis.1c00317 | 2021 | | |
| Solvent Casting and UV Photocuring for Easy and Safe Fabrication of Nanocomposite Film Dressings. | Di Muzio L, Simonetti P, Carriero VC, Brandelli C, Trilli J, Sergi C, Tirillo J, Cairone F, Cesa S, Radocchia G, Schippa S, Petralito S, Paolicelli P, Casadei MA. | Molecules | 10.3390/molecules27092959 | 2022 | | |
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| Enzymology | Directed evolution of a neutrophilic and mesophilic methanol dehydrogenase based on high-throughput and accurate measurement of formaldehyde. | Qian J, Fan L, Yang J, Feng J, Gao N, Cheng G, Pu W, Zhou W, Cai T, Li S, Zheng P, Sun J, Wang D, Wang Y. | Synth Syst Biotechnol | 10.1016/j.synbio.2023.05.004 | 2023 | |
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| Current status of the novel food ingredient safety evaluation system. | Heo S, Lee G, Na HE, Park JH, Kim T, Oh SE, Jeong DW. | Food Sci Biotechnol | 10.1007/s10068-023-01396-w | 2024 | | |
| SSNOMBACTER: A collection of scattering-type scanning near-field optical microscopy and atomic force microscopy images of bacterial cells. | Lucidi M, Tranca DE, Nichele L, Unay D, Stanciu GA, Visca P, Holban AM, Hristu R, Cincotti G, Stanciu SG. | Gigascience | 10.1093/gigascience/giaa129 | 2020 | | |
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| Bifidobacterium adolescentis induces Decorin+ macrophages via TLR2 to suppress colorectal carcinogenesis. | Lin Y, Fan L, Qi Y, Xu C, Jia D, Jiang Y, Chen S, Wang L. | J Exp Clin Cancer Res | 10.1186/s13046-023-02746-6 | 2023 | | |
| Pathogenicity | Increased energy demand from anabolic-catabolic processes drives beta-lactam antibiotic lethality. | Lobritz MA, Andrews IW, Braff D, Porter CBM, Gutierrez A, Furuta Y, Cortes LBG, Ferrante T, Bening SC, Wong F, Gruber C, Bakerlee CW, Lambert G, Walker GC, Dwyer DJ, Collins JJ. | Cell Chem Biol | 10.1016/j.chembiol.2021.12.010 | 2022 | |
| Genetics | Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation. | Bosse JT, Li Y, Cohen LM, Stegger M, Angen O, Lacouture S, Gottschalk M, Lei L, Koene M, Kuhnert P, Bandara AB, Inzana TJ, Holden MTG, Harris D, Oshota O, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR, On Behalf Of The BRaDP T Consortium. | Microb Genom | 10.1099/mgen.0.000687 | 2021 | |
| Dietary phytate primes epithelial antibacterial immunity in the intestine. | Hashimoto-Hill S, Colapietro L, Woo V, Antonacci S, Whitt J, Engleman L, Alenghat T. | Front Immunol | 10.3389/fimmu.2022.952994 | 2022 | | |
| Development of In Vitro and Ex Vivo Biofilm Models for the Assessment of Antibacterial Fibrous Electrospun Wound Dressings. | Lorenz K, Preem L, Sagor K, Putrins M, Tenson T, Kogermann K. | Mol Pharm | 10.1021/acs.molpharmaceut.2c00902 | 2023 | | |
| Genetics | Molecular Characteristics of Novel Phage vB_ShiP-A7 Infecting Multidrug-Resistant Shigella flexneri and Escherichia coli, and Its Bactericidal Effect in vitro and in vivo. | Xu J, Zhang R, Yu X, Zhang X, Liu G, Liu X. | Front Microbiol | 10.3389/fmicb.2021.698962 | 2021 | |
| Enzymology | Chemically Inducible Chromosomal Evolution (CIChE) for Multicopy Metabolic Pathway Engineering. | Love AM, Biggs BW, Tyo KEJ, Ajikumar PK. | Methods Mol Biol | 10.1007/978-1-4939-9142-6_4 | 2019 | |
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| Metabolism | The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. | Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martinez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muniz-Rascado L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velazquez-Ramirez DA, Weaver D, Collado-Vides J, Paulsen I, Karp PD. | Nucleic Acids Res | 10.1093/nar/gkw1003 | 2017 | |
| Pentafluorosulfanyl-containing Triclocarban Analogs with Potent Antimicrobial Activity. | Pujol E, Blanco-Cabra N, Julian E, Leiva R, Torrents E, Vazquez S. | Molecules | 10.3390/molecules23112853 | 2018 | | |
| Genetics | Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes. | Palacios-Flores K, Garcia-Sotelo J, Castillo A, Uribe C, Morales L, Boege M, Davila G, Flores M, Palacios R. | Proc Natl Acad Sci U S A | 10.1073/pnas.2025192118 | 2021 | |
| Enzymology | The soluble transhydrogenase UdhA affecting the glutamate-dependent acid resistance system of Escherichia coli under acetate stress. | Zhao H, Zhou F, Xing Q, Cao Z, Liu J, Zhu G. | Biol Open | 10.1242/bio.031856 | 2018 | |
| Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis. | Thissen JB, Be NA, McLoughlin K, Gardner S, Rack PG, Shapero MH, Rowland RRR, Slezak T, Jaing CJ. | PLoS One | 10.1371/journal.pone.0212045 | 2019 | | |
| Metabolism | Inhibition of Escherichia coli Lipoprotein Diacylglyceryl Transferase Is Insensitive to Resistance Caused by Deletion of Braun's Lipoprotein. | Diao J, Komura R, Sano T, Pantua H, Storek KM, Inaba H, Ogawa H, Noland CL, Peng Y, Gloor SL, Yan D, Kang J, Katakam AK, Volny M, Liu P, Nickerson NN, Sandoval W, Austin CD, Murray J, Rutherford ST, Reichelt M, Xu Y, Xu M, Yanagida H, Nishikawa J, Reid PC, Cunningham CN, Kapadia SB. | J Bacteriol | 10.1128/jb.00149-21 | 2021 | |
| Sequence-Specific Capture of Oligonucleotide Probes (SCOPE): a Simple and Rapid Microbial rRNA Quantification Method Using a Molecular Weight Cutoff Membrane. | Takemura Y, Sekiguchi Y, Syutsubo K, Harada H, Omura T, Li YY, Kubota K. | Appl Environ Microbiol | 10.1128/aem.01167-21 | 2021 | | |
| Metabolism | Guide-target mismatch effects on dCas9-sgRNA binding activity in living bacterial cells. | Feng H, Guo J, Wang T, Zhang C, Xing XH. | Nucleic Acids Res | 10.1093/nar/gkaa1295 | 2021 | |
| Metabolism | Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts. | Kim JH, Wang C, Jang HJ, Cha MS, Park JE, Jo SY, Choi ES, Kim SW. | Microb Cell Fact | 10.1186/s12934-016-0612-6 | 2016 | |
| Commensal Escherichia coli Aggravates Acute Necrotizing Pancreatitis through Targeting of Intestinal Epithelial Cells. | Zheng J, Lou L, Fan J, Huang C, Mei Q, Wu J, Guo Y, Lu Y, Wang X, Zeng Y. | Appl Environ Microbiol | 10.1128/aem.00059-19 | 2019 | | |
| Pathogenicity | Whole-Genome Sequencing and Genetic Analysis Reveal Novel Stress Responses to Individual Constituents of Essential Oils in Escherichia coli. | Chueca B, Renzoni A, Berdejo D, Pagan R, Kelley WL, Garcia-Gonzalo D. | Appl Environ Microbiol | 10.1128/aem.02538-17 | 2018 | |
| Metabolism | Bacterial response to the exposure of 50 Hz electromagnetic fields. | Cellini L, Grande R, Di Campli E, Di Bartolomeo S, Di Giulio M, Robuffo I, Trubiani O, Mariggio MA, Mariggio MA. | Bioelectromagnetics | 10.1002/bem.20391 | 2008 | |
| Antimicrobial Activity of Cerium Oxide Nanoparticles on Opportunistic Microorganisms: A Systematic Review. | Farias IAP, Dos Santos CCL, Sampaio FC. | Biomed Res Int | 10.1155/2018/1923606 | 2018 | | |
| How does the cladoceran Daphnia pulex affect the fate of Escherichia coli in water? | Burnet JB, Faraj T, Cauchie HM, Joaquim-Justo C, Servais P, Prevost M, Dorner SM. | PLoS One | 10.1371/journal.pone.0171705 | 2017 | | |
| Advances in bacteriophage-mediated strategies for combating polymicrobial biofilms. | Glizniewicz M, Milek D, Olszewska P, Czajkowski A, Serwin N, Cecerska-Heryc E, Dolegowska B, Grygorcewicz B. | Front Microbiol | 10.3389/fmicb.2023.1320345 | 2023 | | |
| Proteome | Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types. | Chen K, Anand A, Olson C, Sandberg TE, Gao Y, Mih N, Palsson BO. | PLoS Comput Biol | 10.1371/journal.pcbi.1008596 | 2021 | |
| A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health. | Hatch A, Horne J, Toma R, Twibell BL, Somerville KM, Pelle B, Canfield KP, Genkin M, Banavar G, Perlina A, Messier H, Klitgord N, Vuyisich M. | Int J Genomics | 10.1155/2019/1718741 | 2019 | | |
| Metabolism | Dynamic landscape of protein occupancy across the Escherichia coli chromosome. | Freddolino, Amemiya HM, Goss TJ, Tavazoie S. | PLoS Biol | 10.1371/journal.pbio.3001306 | 2021 | |
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| Pathogenicity | Phage-Antibiotic Synergy via Delayed Lysis. | Kim M, Jo Y, Hwang YJ, Hong HW, Hong SS, Park K, Myung H. | Appl Environ Microbiol | 10.1128/aem.02085-18 | 2018 | |
| Contribution of Amphipathicity and Hydrophobicity to the Antimicrobial Activity and Cytotoxicity of beta-Hairpin Peptides. | Edwards IA, Elliott AG, Kavanagh AM, Zuegg J, Blaskovich MA, Cooper MA. | ACS Infect Dis | 10.1021/acsinfecdis.6b00045 | 2016 | | |
| Intracellular acidification is a hallmark of thymineless death in E. coli. | Ketcham A, Freddolino PL, Tavazoie S. | PLoS Genet | 10.1371/journal.pgen.1010456 | 2022 | | |
| Pathogenicity | Stationary phase persister formation in Escherichia coli can be suppressed by piperacillin and PBP3 inhibition. | Aedo SJ, Orman MA, Brynildsen MP. | BMC Microbiol | 10.1186/s12866-019-1506-7 | 2019 | |
| Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion. | Wangsanuwat C, Heom KA, Liu E, O'Malley MA, Dey SS. | BMC Genomics | 10.1186/s12864-020-07134-4 | 2020 | | |
| The Ethanologenic Bacterium Zymomonas mobilis Divides Asymmetrically and Exhibits Heterogeneity in DNA Content. | Fuchino K, Chan H, Hwang LC, Bruheim P. | Appl Environ Microbiol | 10.1128/aem.02441-20 | 2021 | | |
| Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome. | Lam KN, Spanogiannopoulos P, Soto-Perez P, Alexander M, Nalley MJ, Bisanz JE, Nayak RR, Weakley AM, Yu FB, Turnbaugh PJ. | Cell Rep | 10.1016/j.celrep.2021.109930 | 2021 | | |
| Repurposing Auranofin, Ebselen, and PX-12 as Antimicrobial Agents Targeting the Thioredoxin System. | May HC, Yu JJ, Guentzel MN, Chambers JP, Cap AP, Arulanandam BP. | Front Microbiol | 10.3389/fmicb.2018.00336 | 2018 | | |
| Enzymology | Multiple Optimal Phenotypes Overcome Redox and Glycolytic Intermediate Metabolite Imbalances in Escherichia coli pgi Knockout Evolutions. | McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. | Appl Environ Microbiol | 10.1128/aem.00823-18 | 2018 | |
| Phage-Antibiotic Therapy as a Promising Strategy to Combat Multidrug-Resistant Infections and to Enhance Antimicrobial Efficiency. | Liu C, Hong Q, Chang RYK, Kwok PCL, Chan HK. | Antibiotics (Basel) | 10.3390/antibiotics11050570 | 2022 | | |
| Distinct heterochromatin-like domains promote transcriptional memory and silence parasitic genetic elements in bacteria. | Amemiya HM, Goss TJ, Nye TM, Hurto RL, Simmons LA, Freddolino PL. | EMBO J | 10.15252/embj.2021108708 | 2022 | | |
| Metabolism | Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation. | Chen K, Gao Y, Mih N, O'Brien EJ, Yang L, Palsson BO. | Proc Natl Acad Sci U S A | 10.1073/pnas.1705524114 | 2017 | |
| Physical properties of Escherichia coli spheroplast membranes. | Sun Y, Sun TL, Huang HW. | Biophys J | 10.1016/j.bpj.2014.09.034 | 2014 | | |
| Pathogenicity | Cinnamon Oil Inhibits Shiga Toxin Type 2 Phage Induction and Shiga Toxin Type 2 Production in Escherichia coli O157:H7. | Sheng L, Rasco B, Zhu MJ. | Appl Environ Microbiol | 10.1128/aem.01702-16 | 2016 | |
| Phylogeny | Integrated Counts of Carbohydrate-Active Protein Domains as Metabolic Readouts to Distinguish Probiotic Biology and Human Fecal Metagenomes. | Liu HH, Lin YC, Chung CS, Liu K, Chang YH, Yang CH, Chen Y, Ni YH, Chang PF. | Sci Rep | 10.1038/s41598-019-53173-7 | 2019 | |
| Metabolism | Development of a M9-based urea medium (M9U) for sensitive and real-time monitoring of ureolytic activity of bacteria and cell-free urease. | Sigurdarson JJ, Svane S, Karring H. | Microbiologyopen | 10.1002/mbo3.976 | 2020 | |
| Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database. | Mackie A, Paley S, Keseler IM, Shearer A, Paulsen IT, Karp PD. | J Bacteriol | 10.1128/jb.01209-13 | 2014 | | |
| Metabolism | Improving product yields on D-glucose in Escherichia coli via knockout of pgi and zwf and feeding of supplemental carbon sources. | Shiue E, Brockman IM, Prather KL. | Biotechnol Bioeng | 10.1002/bit.25470 | 2015 | |
| Metabolism | Disrupting Gram-Negative Bacterial Outer Membrane Biosynthesis through Inhibition of the Lipopolysaccharide Transporter MsbA. | Alexander MK, Miu A, Oh A, Reichelt M, Ho H, Chalouni C, Labadie S, Wang L, Liang J, Nickerson NN, Hu H, Yu L, Du M, Yan D, Park S, Kim J, Xu M, Sellers BD, Purkey HE, Skelton NJ, Koehler MFT, Payandeh J, Verma V, Xu Y, Koth CM, Nishiyama M. | Antimicrob Agents Chemother | 10.1128/aac.01142-18 | 2018 | |
| Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring. | Long CP, Gonzalez JE, Feist AM, Palsson BO, Antoniewicz MR. | Metab Eng | 10.1016/j.ymben.2017.09.012 | 2017 | | |
| Pathogenicity | Differential mechanism of Escherichia coli Inactivation by (+)-limonene as a function of cell physiological state and drug's concentration. | Chueca B, Pagan R, Garcia-Gonzalo D. | PLoS One | 10.1371/journal.pone.0094072 | 2014 | |
| Pathogenicity | Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. | Sandberg TE, Long CP, Gonzalez JE, Feist AM, Antoniewicz MR, Palsson BO. | PLoS One | 10.1371/journal.pone.0151130 | 2016 | |
| Pathogenicity | Rapid microbiological testing: monitoring the development of bacterial stress. | Zavizion B, Zhao Z, Nittayajarn A, Rieder RJ. | PLoS One | 10.1371/journal.pone.0013374 | 2010 | |
| Metabolism | Nitrite modulates aminoglycoside tolerance by inhibiting cytochrome heme-copper oxidase in bacteria. | Zhang Y, Guo K, Meng Q, Gao H. | Commun Biol | 10.1038/s42003-020-0991-4 | 2020 | |
| Metabolism | Heterologous expression of Bartonella adhesin A in Escherichia coli by exchange of trimeric autotransporter adhesin domains results in enhanced adhesion properties and a pathogenic phenotype. | Schmidgen T, Kaiser PO, Ballhorn W, Franz B, Gottig S, Linke D, Kempf VA. | J Bacteriol | 10.1128/jb.01461-13 | 2014 | |
| Metabolism | Plasticity of the peroxidase AhpC links multiple substrates to diverse disulfide-reducing pathways in Shewanella oneidensis. | Feng X, Guo K, Gao H. | J Biol Chem | 10.1074/jbc.ra120.014010 | 2020 | |
| Metabolism | tRNA Methylation Is a Global Determinant of Bacterial Multi-drug Resistance. | Masuda I, Matsubara R, Christian T, Rojas ER, Yadavalli SS, Zhang L, Goulian M, Foster LJ, Huang KC, Hou YM. | Cell Syst | 10.1016/j.cels.2019.03.008 | 2019 | |
| Metabolism | Inhibition of urease activity by different compounds provides insight into the modulation and association of bacterial nickel import and ureolysis. | Svane S, Sigurdarson JJ, Finkenwirth F, Eitinger T, Karring H. | Sci Rep | 10.1038/s41598-020-65107-9 | 2020 | |
| Pathogenicity | Metal nanoparticles: understanding the mechanisms behind antibacterial activity. | Slavin YN, Asnis J, Hafeli UO, Bach H. | J Nanobiotechnology | 10.1186/s12951-017-0308-z | 2017 | |
| Phylogeny | Exploration of Deinococcus-Thermus molecular diversity by novel group-specific PCR primers. | Theodorakopoulos N, Bachar D, Christen R, Alain K, Chapon V. | Microbiologyopen | 10.1002/mbo3.119 | 2013 | |
| Fermentative production and direct extraction of (-)-alpha-bisabolol in metabolically engineered Escherichia coli. | Han GH, Kim SK, Yoon PK, Kang Y, Kim BS, Fu Y, Sung BH, Jung HC, Lee DH, Kim SW, Lee SG. | Microb Cell Fact | 10.1186/s12934-016-0588-2 | 2016 | | |
| Metabolism | A Novel Inhibitor of the LolCDE ABC Transporter Essential for Lipoprotein Trafficking in Gram-Negative Bacteria. | Nickerson NN, Jao CC, Xu Y, Quinn J, Skippington E, Alexander MK, Miu A, Skelton N, Hankins JV, Lopez MS, Koth CM, Rutherford S, Nishiyama M. | Antimicrob Agents Chemother | 10.1128/aac.02151-17 | 2018 | |
| Metabolism | Functional Site Discovery in a Sulfur Metabolism Enzyme by Using Directed Evolution. | Paritala H, Palde PB, Carroll KS. | Chembiochem | 10.1002/cbic.201600264 | 2016 | |
| Using the Protozoan Paramecium caudatum as a Vehicle for Food-borne Infections in Zebrafish Larvae. | Flores E, Thompson L, Sirisaengtaksin N, Nguyen AT, Ballard A, Krachler AM. | J Vis Exp | 10.3791/58949 | 2019 | | |
| Evaluations of the Effects of Extremely Low-Frequency Electromagnetic Fields on Growth and Antibiotic Susceptibility of Escherichia coli and Pseudomonas aeruginosa. | Segatore B, Setacci D, Bennato F, Cardigno R, Amicosante G, Iorio R. | Int J Microbiol | 10.1155/2012/587293 | 2012 | | |
| Metabolism | Action of Antimicrobial Peptides on Bacterial and Lipid Membranes: A Direct Comparison. | Faust JE, Yang PY, Huang HW. | Biophys J | 10.1016/j.bpj.2017.03.003 | 2017 | |
| Enzymology | Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples. | Youmans BP, Ajami NJ, Jiang ZD, Petrosino JF, DuPont HL, Highlander SK. | Am J Trop Med Hyg | 10.4269/ajtmh.13-0383 | 2014 | |
| Pathogenicity | Bacterial charity work leads to population-wide resistance. | Lee HH, Molla MN, Cantor CR, Collins JJ. | Nature | 10.1038/nature09354 | 2010 | |
| Pathogenicity | Engineering Phage Host-Range and Suppressing Bacterial Resistance through Phage Tail Fiber Mutagenesis. | Yehl K, Lemire S, Yang AC, Ando H, Mimee M, Torres MT, de la Fuente-Nunez C, Lu TK. | Cell | 10.1016/j.cell.2019.09.015 | 2019 | |
| Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli. | Weiss SJ, Mansell TJ, Mortazavi P, Knight R, Gill RT. | PLoS One | 10.1371/journal.pone.0146916 | 2016 | | |
| Eukaryotic Acquisition of a Bacterial Operon. | Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT. | Cell | 10.1016/j.cell.2019.01.034 | 2019 | | |
| Pathogenicity | Role of autofluorescence in flow cytometric analysis of Escherichia coli treated with bactericidal antibiotics. | Renggli S, Keck W, Jenal U, Ritz D. | J Bacteriol | 10.1128/jb.00393-13 | 2013 | |
| Characterization of Antibacterial Activities of Eastern Subterranean Termite, Reticulitermes flavipes, against Human Pathogens. | Zeng Y, Hu XP, Suh SJ. | PLoS One | 10.1371/journal.pone.0162249 | 2016 | | |
| Metabolism | Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype. | Kurylo CM, Parks MM, Juette MF, Zinshteyn B, Altman RB, Thibado JK, Vincent CT, Blanchard SC. | Cell Rep | 10.1016/j.celrep.2018.08.093 | 2018 | |
| Pathogenicity | Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis. | Mansour M, Giudice E, Xu X, Akarsu H, Bordes P, Guillet V, Bigot DJ, Slama N, D'urso G, Chat S, Redder P, Falquet L, Mourey L, Gillet R, Genevaux P. | Nat Commun | 10.1038/s41467-022-30373-w | 2022 | |
| Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome. | McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. | Front Microbiol | 10.3389/fmicb.2018.01793 | 2018 | | |
| Low-cost detection of norovirus using paper-based cell-free systems and synbody-based viral enrichment. | Ma D, Shen L, Wu K, Diehnelt CW, Green AA. | Synth Biol (Oxf) | 10.1093/synbio/ysy018 | 2018 | | |
| Metallohelices that kill Gram-negative pathogens using intracellular antimicrobial peptide pathways. | Simpson DH, Hapeshi A, Rogers NJ, Brabec V, Clarkson GJ, Fox DJ, Hrabina O, Kay GL, King AK, Malina J, Millard AD, Moat J, Roper DI, Song H, Waterfield NR, Scott P. | Chem Sci | 10.1039/c9sc03532j | 2019 | | |
| Upregulation of CD14 in mesenchymal stromal cells accelerates lipopolysaccharide-induced response and enhances antibacterial properties. | Hirakawa MP, Tjahjono N, Light YK, Celebi AN, Celebi NN, Chintalapudi P, Butler KS, Branda SS, Krishnakumar R. | iScience | 10.1016/j.isci.2022.103759 | 2022 | | |
| Metabolism | The damaging effects of short chain fatty acids on Escherichia coli membranes. | Royce LA, Liu P, Stebbins MJ, Hanson BC, Jarboe LR. | Appl Microbiol Biotechnol | 10.1007/s00253-013-5113-5 | 2013 | |
| Reducing ZnO nanoparticles toxicity through silica coating. | Chia SL, Leong DT. | Heliyon | 10.1016/j.heliyon.2016.e00177 | 2016 | | |
| Metabolism | Leukocyte integrin Mac-1 (CD11b/CD18, alphaMbeta2, CR3) acts as a functional receptor for platelet factor 4. | Lishko VK, Yakubenko VP, Ugarova TP, Podolnikova NP. | J Biol Chem | 10.1074/jbc.ra117.000515 | 2018 | |
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| Multiplexed deactivated CRISPR-Cas9 gene expression perturbations deter bacterial adaptation by inducing negative epistasis. | Otoupal PB, Cordell WT, Bachu V, Sitton MJ, Chatterjee A. | Commun Biol | 10.1038/s42003-018-0135-2 | 2018 | | |
| Effect of modeled reduced gravity conditions on bacterial morphology and physiology. | Vukanti R, Model MA, Leff LG. | BMC Microbiol | 10.1186/1471-2180-12-4 | 2012 | | |
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How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive155687.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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