Escherichia coli RM77C is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 39449 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 39449 | CIP Medium 3 | Medium recipe at CIP | |||
| 39449 | CIP Medium 72 | Medium recipe at CIP |
| 39449 | Oxygen tolerancefacultative anaerobe |
| 39449 | Spore formationno |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 39449 | 16947 ChEBI | citrate | - | carbon source | |
| 39449 | 4853 ChEBI | esculin | + | hydrolysis | |
| 39449 | 17234 ChEBI | glucose | + | fermentation | |
| 39449 | 17234 ChEBI | glucose | + | degradation | |
| 39449 | 17716 ChEBI | lactose | + | fermentation | |
| 39449 | 15792 ChEBI | malonate | - | assimilation | |
| 39449 | 29864 ChEBI | mannitol | + | fermentation | |
| 39449 | 17632 ChEBI | nitrate | + | reduction | |
| 39449 | 16301 ChEBI | nitrite | + | reduction | |
| 39449 | 132112 ChEBI | sodium thiosulfate | - | builds gas from |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 39449 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 39449 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 39449 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 39449 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 39449 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 39449 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 39449 | ornithine decarboxylase | + | 4.1.1.17 | |
| 39449 | oxidase | - | ||
| 39449 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 39449 | tryptophan deaminase | - | ||
| 39449 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 39449 | 2 | Risk group (French classification) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genome Sequences of 16 Escherichia coli Bacteriophages Isolated from Wastewater, Pond Water, Cow Manure, and Bird Feces. | Vitt AR, Ahern SJ, Gambino M, Sorensen MCH, Brondsted L. | Microbiol Resour Announc | 10.1128/mra.00608-22 | 2022 | ||
| Metabolism | The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli. | Hogins J, Xuan Z, Zimmern PE, Reitzer L. | Microbiol Spectr | 10.1128/spectrum.02085-23 | 2023 | |
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| In Vitro and In Vivo Assessment of the Potential of Escherichia coli Phages to Treat Infections and Survive Gastric Conditions. | Kaczorowska J, Casey E, Lugli GA, Ventura M, Clarke DJ, van Sinderen D, Mahony J. | Microorganisms | 10.3390/microorganisms9091869 | 2021 | ||
| Enzymology | Detection of diarrheagenic Escherichia coli by use of melting-curve analysis and real-time multiplex PCR. | Guion CE, Ochoa TJ, Walker CM, Barletta F, Cleary TG. | J Clin Microbiol | 10.1128/jcm.02341-07 | 2008 | |
| Transposable element loads in a bacterial symbiont of weevils are extremely variable. | Dougherty KM, Plague GR. | Appl Environ Microbiol | 10.1128/aem.01049-08 | 2008 | ||
| Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination. | Milkman R, Jaeger E, McBride RD. | Genetics | 10.1093/genetics/163.2.475 | 2003 | ||
| Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. | Boyd EF, Hartl DL. | J Bacteriol | 10.1128/jb.180.5.1159-1165.1998 | 1998 | ||
| Bacterial interspersed mosaic elements (BIMEs) are a major source of sequence polymorphism in Escherichia coli intergenic regions including specific associations with a new insertion sequence. | Bachellier S, Clement JM, Hofnung M, Gilson E. | Genetics | 10.1093/genetics/145.3.551 | 1997 | ||
| The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium. | Bisercic M, Ochman H. | J Bacteriol | 10.1128/jb.175.24.7863-7868.1993 | 1993 | ||
| Natural populations of Escherichia coli and Salmonella typhimurium harbor the same classes of insertion sequences. | Bisercic M, Ochman H. | Genetics | 10.1093/genetics/133.3.449 | 1993 | ||
| Molecular evolution of the Escherichia coli chromosome. IV. Sequence comparisons. | Milkman R, Bridges MM. | Genetics | 10.1093/genetics/133.3.455 | 1993 | ||
| Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli. | Wang YD, Zhao S, Hill CW. | J Bacteriol | 10.1128/jb.180.16.4102-4110.1998 | 1998 | ||
| Metabolism | Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae. | Baldauf SL, Manhart JR, Palmer JD. | Proc Natl Acad Sci U S A | 10.1073/pnas.87.14.5317 | 1990 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #39449 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106035 |
| #68382 | Automatically annotated from API zym . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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