Escherichia coli C984 is an aerobe, Gram-negative, motile bacterium that was isolated from Human feces.
Gram-negative motile rod-shaped aerobe genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | |
|---|---|---|---|---|
| 118677 | CIP Medium 3 | Medium recipe at CIP | ||
| 118677 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 118677 | 16947 ChEBI | citrate | - | carbon source | |
| 118677 | 4853 ChEBI | esculin | - | hydrolysis | |
| 118677 | 17234 ChEBI | glucose | + | fermentation | |
| 118677 | 17234 ChEBI | glucose | + | degradation | |
| 118677 | 17716 ChEBI | lactose | + | fermentation | |
| 118677 | 15792 ChEBI | malonate | - | assimilation | |
| 118677 | 29864 ChEBI | mannitol | + | fermentation | |
| 118677 | 17632 ChEBI | nitrate | + | reduction | |
| 118677 | 16301 ChEBI | nitrite | + | reduction | |
| 118677 | 132112 ChEBI | sodium thiosulfate | - | builds gas from |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 118677 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118677 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118677 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118677 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118677 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118677 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118677 | ornithine decarboxylase | + | 4.1.1.17 | |
| 118677 | oxidase | - | ||
| 118677 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118677 | tryptophan deaminase | - | ||
| 118677 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 118677 | 3 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM965017v1 assembly for Escherichia coli O157:H7 CFSAN076619 | complete | 83334 | 98.73 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 59.70 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 64.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 63.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 82.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.48 | yes |
| 125438 | aerobic | aerobicⓘ | no | 70.16 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 88.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.86 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| UV inactivation, liquid-holding recovery, and photoreactivation of Escherichia coli O157 and other pathogenic Escherichia coli strains in water. | Sommer R, Lhotsky M, Haider T, Cabaj A. | J Food Prot | 10.4315/0362-028x-63.8.1015 | 2000 | ||
| Removal of RcsB/RcsA-dependent inhibition of curli expression improves autoaggregation in the Escherichia coli O157:H7. | Domnin PA, Zakharchenko AE, Rejepov DT, Ermolaeva SA. | FEMS Microbiol Lett | 10.1093/femsle/fnaf117 | 2025 | ||
| Genetics | Effects of UVC Treatment on Biofilms of Escherichia coli Strains Formed at Different Temperatures and Maturation Periods. | Kyoung M, Lee JI, Kim SS. | Foods | 10.3390/foods14173091 | 2025 | |
| The Small Molecule Inhibitor of the Type III Secretion System Fluorothiazinone Affects Flagellum Surface Presentation and Restricts Motility in Gram-Negative Bacteria | Slonov A, Abdulkadieva M, Kalinin E, Bondareva N, Kapotina L, Andreevskaya S, Shevlyagina N, Sheremet A, Sysolyatina E, Zhukhovitsky V, Vasiliev M, Petrov O, Ermolaeva S, Zigangirova N, Gintsburg A. | Antibiotics (Basel) | 2025 | |||
| Influence of Physicochemical Properties of Iron Oxide Nanoparticles on Their Antibacterial Activity. | Shoudho KN, Uddin S, Rumon MMH, Shakil MS. | ACS Omega | 10.1021/acsomega.4c02822 | 2024 | ||
| Phylogeny | Isolation and Characterization of Novel Escherichia coli O157:H7 Phage SPEC13 as a Therapeutic Agent for E. coli Infections In Vitro and In Vivo. | Islam MS, Fan J, Suzauddula M, Nime I, Pan F. | Biomedicines | 10.3390/biomedicines12092036 | 2024 | |
| Complete Genome Sequence of Bacteriophage EO1, Which Infects Both Escherichia coli O157:H7 and Shigella. | Choi J, Chang Y. | Microbiol Resour Announc | 10.1128/mra.00177-23 | 2023 | ||
| Genetics | Bacteriophage cocktail LEC2-LEC10 for broad-spectrum control of pathogenic and uncharacterized Escherichia coli in fresh produce | Kim E, Ryu S, Lim J. | Front Microbiol | 2025 | ||
| Effects of Electron Beam Irradiation on the Storage Stability and Quality Characteristics of Chicken and Duck Meat. | Kang KM, Kim HY. | Foods | 10.3390/foods14223867 | 2025 | ||
| Genetics | Genetic and virulence characteristics of hybrid Shiga toxin-producing and atypical enteropathogenic Escherichia coli strains isolated in South Korea. | Lee W, Ha J, Choi J, Jung Y, Kim E, An ES, Kim SH, Shin H, Ryu S, Kim SH, Kim HY. | Front Microbiol | 10.3389/fmicb.2024.1398262 | 2024 | |
| Inactivation Efficacy of Combination Treatment of Propyl Gallate and UVA LED for Escherichia coli O157:H7 in Apple Juice | Cho Y, Kang D, Kim D. | Journal of food science. | 2025 | |||
| Green synthesis of silver nanoparticles using Sudanese Candida parapsilosis: a sustainable approach to combat antimicrobial resistance. | Ibrahim NAA, Saeed HA, Saeed SM, Mohamed O, Suliman OH, Ibrahim SAE, Mohamed SB. | BMC Microbiol | 10.1186/s12866-025-04038-9 | 2025 | ||
| Probiotic-Mediated Biosynthesis of Silver Nanoparticles and Their Antibacterial Applications against Pathogenic Strains of Escherichia coli O157:H7. | Wang X, Lee SY, Akter S, Huq MA. | Polymers (Basel) | 10.3390/polym14091834 | 2022 | ||
| Evaluation of Antioxidant and Antibacterial Activity of Gelatin Nanoparticles with Bitter Orange Peel Extract for Food Applications. | Garcia-Juarez A, Garzon-Garcia AM, Ramos-Enriquez JR, Tapia-Hernandez JA, Ruiz-Cruz S, Canizales-Rodriguez DF, Del-Toro-Sanchez CL, Rodriguez-Felix F, Ocano-Higuera VM, Ornelas-Paz JJ. | Foods | 10.3390/foods13233838 | 2024 | ||
| Comparative genomics analysis and characterization of Shiga toxin-producing Escherichia coli O157:H7 strains reveal virulence genes, resistance genes, prophages and plasmids. | Naidoo N, Zishiri OT. | BMC Genomics | 10.1186/s12864-023-09902-4 | 2023 | ||
| An In Vitro Model of Nonattached Biofilm-Like Bacterial Aggregates Based on Magnetic Levitation. | Domnin P, Arkhipova A, Petrov S, Sysolyatina E, Parfenov V, Karalkin P, Mukhachev A, Gusarov A, Moisenovich M, Khesuani Y, Ermolaeva S. | Appl Environ Microbiol | 10.1128/aem.01074-20 | 2020 | ||
| A CRISPR/Cas12a-Based System for Sensitive Detection of Antimicrobial-Resistant Genes in Carbapenem-Resistant Enterobacterales. | Shin J, Kim SR, Xie Z, Jin YS, Wang YC. | Biosensors (Basel) | 10.3390/bios14040194 | 2024 | ||
| Identification of amino acid residue in the Cronobacter sakazakii LamB responsible for the receptor compatibility of polyvalent coliphage CSP1. | Kim M, Kim M, Ryu S. | J Virol | 10.1128/jvi.00676-24 | 2024 | ||
| Prokaryotic virus host prediction with graph contrastive augmentaion. | Du ZH, Zhong JP, Liu Y, Li JQ. | PLoS Comput Biol | 10.1371/journal.pcbi.1011671 | 2023 | ||
| Oregano Essential Oil versus Conventional Disinfectants against Salmonella Typhimurium and Escherichia coli O157:H7 Biofilms and Damage to Stainless-Steel Surfaces. | Luna-Solorza JM, Ayala-Zavala JF, Cruz-Valenzuela MR, Gonzalez-Aguilar GA, Bernal-Mercado AT, Gutierrez-Pacheco MM, Silva-Espinoza BA. | Pathogens | 10.3390/pathogens12101245 | 2023 | ||
| Power of Scanning Electron Microscopy and Energy Dispersive X-Ray Analysis in Rapid Microbial Detection and Identification at the Single Cell Level. | Khan MSI, Oh SW, Kim YJ. | Sci Rep | 10.1038/s41598-020-59448-8 | 2020 | ||
| Effect of Bifidobacterium crudilactis and 3'-sialyllactose on the toddler microbiota using the SHIME® model. | Bondue P, Lebrun S, Taminiau B, Everaert N, LaPointe G, Hendrick C, Gaillez J, Crevecoeur S, Daube G, Delcenserie V. | Food Res Int | 10.1016/j.foodres.2020.109755 | 2020 | ||
| Salmonella Detection in Food Using a HEK-hTLR5 Reporter Cell-Based Sensor. | Eser E, Felton VA, Drolia R, Bhunia AK. | Biosensors (Basel) | 10.3390/bios14090444 | 2024 | ||
| Evaluation of the frequency of Escherichia coli pathogroups in Brassica oleracea cultivars. | Razeh F, Salmanzadeh-Ahrabi S, Zarei R, Attaran B. | Iran J Microbiol | 10.18502/ijm.v14i1.8808 | 2022 | ||
| Enzymology | Control of Foodborne Pathogenic Bacteria by Endophytic Bacteria Isolated from Ginkgo biloba L. | Islam MN, Choi J, Baek KH. | Foodborne Pathog Dis | 10.1089/fpd.2018.2496 | 2019 | |
| Bifidobacterium mongoliense genome seems particularly adapted to milk oligosaccharide digestion leading to production of antivirulent metabolites. | Bondue P, Milani C, Arnould E, Ventura M, Daube G, LaPointe G, Delcenserie V. | BMC Microbiol | 10.1186/s12866-020-01804-9 | 2020 | ||
| Genetic Diversity and Virulence Profiling of Multi-Drug Resistant Escherichia coli of Human, Animal, and Environmental Origins. | Yar A, Choudary MA, Rehman A, Hussain A, Elahi A, Ur Rehman F, Waqar AB, Alshammari A, Alharbi M, Nisar MA, Khurshid M, Khan Z. | Antibiotics (Basel) | 10.3390/antibiotics11081061 | 2022 | ||
| Development of a Dual Mode UCNPs-MB Biosensor in Combination with PCR for Sensitive Detection of Salmonella. | Han L, Chen M, Song Y, Yan Z, Zhou D, Pan L, Tu K. | Biosensors (Basel) | 10.3390/bios13040475 | 2023 | ||
| Characterization and Genomic Study of the Novel Bacteriophage HY01 Infecting Both Escherichia coli O157:H7 and Shigella flexneri: Potential as a Biocontrol Agent in Food. | Lee H, Ku HJ, Lee DH, Kim YT, Shin H, Ryu S, Lee JH. | PLoS One | 10.1371/journal.pone.0168985 | 2016 | ||
| A Comprehensive Analysis of the UVC LEDs' Applications and Decontamination Capability. | Nicolau T, Gomes Filho N, Padrao J, Zille A. | Materials (Basel) | 10.3390/ma15082854 | 2022 | ||
| Stress | Influence of Low-Shear Modeled Microgravity on Heat Resistance, Membrane Fatty Acid Composition, and Heat Stress-Related Gene Expression in Escherichia coli O157:H7 ATCC 35150, ATCC 43889, ATCC 43890, and ATCC 43895. | Kim HW, Rhee MS. | Appl Environ Microbiol | 10.1128/aem.00050-16 | 2016 | |
| Antibacterial and Antioxidant Properties of Extracts of Yucca Baccata, a Plant of Northwestern Mexico, against Pathogenic Bacteria. | Morales-Figueroa GG, Pereo-Vega GD, Reyna-Murrieta ME, Perez-Morales R, Lopez-Mata MA, Sanchez-Escalante JJ, Tapia-Rodriguez MR, Ayala-Zavala JF, Juarez J, Quihui-Cota L. | Biomed Res Int | 10.1155/2022/9158836 | 2022 | ||
| Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp. | Lee JI, Kim SS, Kang DH. | Sci Rep | 10.1038/s41598-018-37060-1 | 2019 | ||
| Pathogenicity | Effect of phenolic compounds on the growth of selected probiotic and pathogenic bacteria. | Pacheco-Ordaz R, Wall-Medrano A, Goni MG, Ramos-Clamont-Montfort G, Ayala-Zavala JF, Gonzalez-Aguilar GA. | Lett Appl Microbiol | 10.1111/lam.12814 | 2018 | |
| Quercetin mediated antimicrobial photodynamic treatment using blue light on Escherichia coli O157:H7 and Listeria monocytogenes. | Lee IH, Kim SH, Kang DH. | Curr Res Food Sci | 10.1016/j.crfs.2022.100428 | 2023 | ||
| Antibacterial mechanism of the action of Enteromorpha linza L. essential oil against Escherichia coli and Salmonella Typhimurium. | Patra JK, Das G, Baek KH. | Bot Stud | 10.1186/s40529-015-0093-7 | 2015 | ||
| Genetics | Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes. | Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY. | Foods | 10.3390/foods10112839 | 2021 | |
| Quantitative real-time PCR analysis of bacterial biomarkers enable fast and accurate monitoring in inflammatory bowel disease. | Sezgin E, Terlemez G, Bozkurt B, Bengi G, Akpinar H, Buyuktorun I. | PeerJ | 10.7717/peerj.14217 | 2022 | ||
| Asterias pectinifera-Derived Collagen Peptides Mixed with Halocynthia roretzi Extracts Exhibit Anti-Photoaging Activities during Exposure to UV Irradiation, and Antibacterial Properties. | Oh SJ, Park JY, Won B, Oh YT, Yang SC, Shin OS. | J Microbiol Biotechnol | 10.4014/jmb.2207.07018 | 2022 | ||
| Treatment of Clinically Important Bacteria With Cold Atmospheric Plasma. | Ding R, Song J, Huang X, Tan L, Rao X, Yang Y. | Microb Biotechnol | 10.1111/1751-7915.70219 | 2025 | ||
| Control Measurements of Escherichia coli Biofilm: A Review. | Zhou F, Wang D, Hu J, Zhang Y, Tan BK, Lin S. | Foods | 10.3390/foods11162469 | 2022 | ||
| Antibacterial Properties of Endophytic Bacteria Isolated from a Fern Species Equisetum arvense L. Against Foodborne Pathogenic Bacteria Staphylococcus aureus and Escherichia coli O157:H7. | Das G, Patra JK, Baek KH. | Foodborne Pathog Dis | 10.1089/fpd.2016.2192 | 2017 | ||
| Biofabrication of streptomycin-conjugated calcium phosphate nanoparticles using red ginseng extract and investigation of their antibacterial potential. | Das G, Baek KH, Patra JK. | PLoS One | 10.1371/journal.pone.0217318 | 2019 | ||
| Rapid Detection of Salmonella Enteritidis, Typhimurium, and Thompson by Specific Peak Analysis Using Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry. | Yang SM, Kim E, Kim D, Baek J, Yoon H, Kim HY. | Foods | 10.3390/foods10050933 | 2021 | ||
| Volatile Oils of Nepeta tenuifolia (Jing Jie) as an Alternative Medicine against Multidrug-Resistant Pathogenic Microbes. | Lee YH, Wang CM, Liu PY, Cheng CC, Wu ZY, Tseng SY, Tung KC. | Can J Infect Dis Med Microbiol | 10.1155/2018/8347403 | 2018 | ||
| Antimicrobial Properties of Chilean Native Plants: Future Aspects in Their Application in the Food Industry. | Otero MC, Fuentes JA, Atala C, Cuadros-Orellana S, Fuentes C, Gordillo-Fuenzalida F. | Foods | 10.3390/foods11121763 | 2022 | ||
| Enzymology | Viable but Nonculturable Escherichia coli O157:H7 and Salmonella enterica in Fresh Produce: Rapid Determination by Loop-Mediated Isothermal Amplification Coupled with a Propidium Monoazide Treatment. | Han L, Wang K, Ma L, Delaquis P, Bach S, Feng J, Lu X. | Appl Environ Microbiol | 10.1128/aem.02566-19 | 2020 | |
| Antibacterial Activity of Caffeic Acid Combined with UV-A Light against Escherichia coli O157:H7, Salmonella enterica Serovar Typhimurium, and Listeria monocytogenes. | Park MY, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00631-21 | 2021 | ||
| Biotechnology | The Mechanistic Action of Biosynthesised Silver Nanoparticles and Its Application in Aquaculture and Livestock Industries. | De Silva C, Nawawi NM, Abd Karim MM, Abd Gani S, Masarudin MJ, Gunasekaran B, Ahmad SA. | Animals (Basel) | 10.3390/ani11072097 | 2021 | |
| Resistance of pathogenic biofilms on glass fiber filters formed under different conditions. | Song H, Lee SY. | Food Sci Biotechnol | 10.1007/s10068-020-00773-z | 2020 | ||
| Biotechnology | Natural Polyphenol Recovery from Apple-, Cereal-, and Tomato-Processing By-Products and Related Health-Promoting Properties. | Szabo K, Mitrea L, Calinoiu LF, Teleky BE, Martau GA, Plamada D, Pascuta MS, Nemes SA, Varvara RA, Vodnar DC. | Molecules | 10.3390/molecules27227977 | 2022 | |
| Inhibition of Glucosyltransferase Activity and Glucan Production as an Antibiofilm Mechanism of Lemongrass Essential Oil against Escherichia coli O157:H7. | Ortega-Ramirez LA, Gutierrez-Pacheco MM, Vargas-Arispuro I, Gonzalez-Aguilar GA, Martinez-Tellez MA, Ayala-Zavala JF. | Antibiotics (Basel) | 10.3390/antibiotics9030102 | 2020 | ||
| Antibacterial Activity and Synergistic Antibacterial Potential of Biosynthesized Silver Nanoparticles against Foodborne Pathogenic Bacteria along with its Anticandidal and Antioxidant Effects. | Patra JK, Baek KH. | Front Microbiol | 10.3389/fmicb.2017.00167 | 2017 | ||
| Metabolism | Novel green synthesis of gold nanoparticles using Citrullus lanatus rind and investigation of proteasome inhibitory activity, antibacterial, and antioxidant potential. | Patra JK, Baek KH. | Int J Nanomedicine | 10.2147/ijn.s95483 | 2015 | |
| Elicitation of Stress-Induced Phenolic Metabolites for Antimicrobial Applications against Foodborne Human Bacterial Pathogens. | Christopher A, Sarkar D, Shetty K. | Antibiotics (Basel) | 10.3390/antibiotics10020109 | 2021 | ||
| Pathogenicity | The combined effect of high pressure processing and dimethyl dicarbonate to inactivate foodborne pathogens in apple juice. | Petrus RR, Churey JJ, Humiston GA, Cheng RM, Worobo RW. | Braz J Microbiol | 10.1007/s42770-019-00145-8 | 2020 | |
| Development of a multiplex loop-mediated isothermal amplification assay to detect shiga toxin-producing Escherichia coli in cattle. | Dong HJ, Cho AR, Hahn TW, Cho S. | J Vet Sci | 10.4142/jvs.2014.15.2.317 | 2014 | ||
| Study on the presence of resistant diarrheagenic pathotypes in Escherichia coli isolated from patients with urinary tract infection. | Derakhshan S, Farhadifar F, Roshani D, Ahmadi A, Haghi F. | Gastroenterol Hepatol Bed Bench | 2019 | |||
| Biocontrol Approaches against Escherichia coli O157:H7 in Foods. | Puligundla P, Lim S. | Foods | 10.3390/foods11050756 | 2022 | ||
| Chemical Composition and Antioxidant and Antibacterial Activities of an Essential Oil Extracted from an Edible Seaweed, Laminaria japonica L. | Patra JK, Das G, Baek KH. | Molecules | 10.3390/molecules200712093 | 2015 | ||
| Inhibiting the Growth of Escherichia coli O157:H7 in Beef, Pork, and Chicken Meat using a Bacteriophage. | Seo J, Seo DJ, Oh H, Jeon SB, Oh MH, Choi C. | Korean J Food Sci Anim Resour | 10.5851/kosfa.2016.36.2.186 | 2016 | ||
| Phenolic-Rich Plant Extracts With Antimicrobial Activity: An Alternative to Food Preservatives and Biocides? | Oulahal N, Degraeve P. | Front Microbiol | 10.3389/fmicb.2021.753518 | 2021 | ||
| Biotechnology | Characterization and comparative genomic analysis of a novel bacteriophage, SFP10, simultaneously inhibiting both Salmonella enterica and Escherichia coli O157:H7. | Park M, Lee JH, Shin H, Kim M, Choi J, Kang DH, Heu S, Ryu S. | Appl Environ Microbiol | 10.1128/aem.06231-11 | 2012 | |
| Numerical analysis of rectangular type batch ohmic heater to identify the cold point. | Choi W, Kim SS, Park SH, Ahn JB, Kang DH. | Food Sci Nutr | 10.1002/fsn3.1353 | 2020 | ||
| Biosynthesis of silver nanoparticles using aqueous extract of silky hairs of corn and investigation of its antibacterial and anticandidal synergistic activity and antioxidant potential. | Patra JK, Baek KH. | IET Nanobiotechnol | 10.1049/iet-nbt.2015.0102 | 2016 | ||
| Development of a freeze-dried symbiotic obtained from rice bran. | Ferronatto AN, Rossi R, Massochin Nunes Pinto L, Garavaglia J. | Biotechnol Rep (Amst) | 10.1016/j.btre.2021.e00636 | 2021 | ||
| Direct Detection of Escherichia coli, Staphylococcus aureus, and Salmonella spp. in Animal-derived Foods Using a Magnetic Bead-based Immunoassay. | Kim JH, Yoo JG, Ham JS, Oh MH. | Korean J Food Sci Anim Resour | 10.5851/kosfa.2018.e11 | 2018 | ||
| Decontamination Effect of the Spindle and 222-Nanometer Krypton-Chlorine Excimer Lamp Combination against Pathogens on Apples (Malus domestica Borkh.) and Bell Peppers (Capsicum annuum L.). | Kang JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00006-19 | 2019 | ||
| Effect of the precutting process on sanitizing treatments for reducing pathogens in vegetables. | Hwang JH, Yoon JH, Bae YM, Choi MR, Lee SY, Park KH. | Food Sci Biotechnol | 10.1007/s10068-017-0073-7 | 2017 | ||
| Development of safe, effective and immunogenic vaccine candidate for diarrheagenic Escherichia coli main pathotypes in a mouse model. | Gohar A, Abdeltawab NF, Fahmy A, Amin MA. | BMC Res Notes | 10.1186/s13104-016-1891-z | 2016 | ||
| Enzymology | Pentaplex PCR assay for detection of hemorrhagic bacteria from stool samples. | Al-Talib H, Latif B, Mohd-Zain Z. | J Clin Microbiol | 10.1128/jcm.00891-14 | 2014 | |
| UVC LED Irradiation Effectively Inactivates Aerosolized Viruses, Bacteria, and Fungi in a Chamber-Type Air Disinfection System. | Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.00944-18 | 2018 | ||
| Fruit Extract Mediated Green Synthesis of Metallic Nanoparticles: A New Avenue in Pomology Applications. | Kumar H, Bhardwaj K, Dhanjal DS, Nepovimova E, Sen F, Regassa H, Singh R, Verma R, Kumar V, Kumar D, Bhatia SK, Kuca K. | Int J Mol Sci | 10.3390/ijms21228458 | 2020 | ||
| Isolation of Enteropathogenic Escherichia coli from lettuce samples in Tehran. | Mazaheri S, Salmanzadeh-Ahrabi S, Falsafi T, Aslani MM. | Gastroenterol Hepatol Bed Bench | 2014 | |||
| Metabolism | Increased Resistance of Salmonella enterica Serovar Typhimurium and Escherichia coli O157:H7 to 222-Nanometer Krypton-Chlorine Excilamp Treatment by Acid Adaptation. | Kang JW, Kang DH. | Appl Environ Microbiol | 10.1128/aem.02221-18 | 2019 | |
| Cell-Free Spent Media Obtained from Bifidobacterium bifidum and Bifidobacterium crudilactis Grown in Media Supplemented with 3'-Sialyllactose Modulate Virulence Gene Expression in Escherichia coli O157:H7 and Salmonella Typhimurium. | Bondue P, Crevecoeur S, Brose F, Daube G, Seghaye MC, Griffiths MW, LaPointe G, Delcenserie V. | Front Microbiol | 10.3389/fmicb.2016.01460 | 2016 | ||
| Antioxidant and antimicrobial activity of Agave angustifolia extract on overall quality and shelf life of pork patties stored under refrigeration. | Lopez-Romero JC, Ayala-Zavala JF, Pena-Ramos EA, Hernandez J, Gonzalez-Rios H. | J Food Sci Technol | 10.1007/s13197-018-3351-3 | 2018 | ||
| Pathogenicity | Comparative study of proteasome inhibitory, synergistic antibacterial, synergistic anticandidal, and antioxidant activities of gold nanoparticles biosynthesized using fruit waste materials. | Patra JK, Baek KH. | Int J Nanomedicine | 10.2147/ijn.s108920 | 2016 | |
| Isolation of Shiga toxin-producing Escherichia coli from raw milk in Kermanshah, Iran. | Mohammadi P, Abiri R, Rezaei M, Salmanzadeh-Ahrabi S. | Iran J Microbiol | 2013 | |||
| Using Sensory Evaluation to Determine the Highest Acceptable Concentration of Mango Seed Extract as Antibacterial and Antioxidant Agent in Fresh-Cut Mango. | Bernal-Mercado AT, Ayala-Zavala JF, Cruz-Valenzuela MR, Gonzalez-Aguilar GA, Nazzaro F, Fratianni F, Miranda MRA, Silva-Espinoza BA. | Foods | 10.3390/foods7080120 | 2018 | ||
| Shiga toxin-producing Escherichia coli isolated from lettuce samples in tehran, iran. | Mazaheri S, Salmanzadeh Ahrabi S, Aslani MM. | Jundishapur J Microbiol | 10.5812/jjm.12346 | 2014 | ||
| Stress | Impact of antibiotic stress on acid and heat tolerance and virulence factor expression of Escherichia coli O157:H7. | Azizoglu RO, Drake M. | J Food Prot | 10.4315/0362-028x-70.1.194 | 2007 | |
| Investigation of optimum ohmic heating conditions for inactivation of Escherichia coli O157:H7, Salmonella enterica serovar Typhimurium, and Listeria monocytogenes in apple juice. | Park IK, Ha JW, Kang DH. | BMC Microbiol | 10.1186/s12866-017-1029-z | 2017 | ||
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| Using UVC Light-Emitting Diodes at Wavelengths of 266 to 279 Nanometers To Inactivate Foodborne Pathogens and Pasteurize Sliced Cheese. | Kim SJ, Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.02092-15 | 2016 | ||
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| Fundamental Characteristics of Deep-UV Light-Emitting Diodes and Their Application To Control Foodborne Pathogens. | Shin JY, Kim SJ, Kim DK, Kang DH. | Appl Environ Microbiol | 10.1128/aem.01186-15 | 2016 | ||
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| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #49541 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29193 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #118677 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106325 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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