Escherichia coli Hfr D is a mesophilic prokaryote of the family Enterobacteriaceae.
mesophilic| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3213 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 3213 | positive | growth | 37 | mesophilic |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3213 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 3213 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Escherichia phage fd (Escherichia virus fd) | DSM 8226 |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Filamentous bacteriophage M13 induces proinflammatory responses in intestinal epithelial cells. | Varadan AC, Grasis JA. | Infect Immun | 10.1128/iai.00618-24 | 2025 | |
| Isolation of F-specific Inovirus filamentous phages from environmental sewage samples. | Theriault N, Cook BWM, Theriault SS, Court DA. | MethodsX | 10.1016/j.mex.2025.103701 | 2025 | |
| Energy-Efficient and Effective MCF-7 Cell Ablation and Electrothermal Therapy Enabled by M13-WS2-PEG Nanostructures. | Meivita MP, Mozar FS, Go SX, Li L, Bajalovic N, Loke DK. | Materials (Basel) | 10.3390/ma17184624 | 2024 | |
| Applicability Evaluation of Male-Specific Coliphage-Based Detection Methods for Microbial Contamination Tracking. | Kim G, Park G, Kang S, Lee S, Park J, Ha J, Park K, Kang M, Cho M, Shin H. | J Microbiol Biotechnol | 10.4014/jmb.2110.10003 | 2021 | |
| Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing. | Adler BA, Hessler T, Cress BF, Lahiri A, Mutalik VK, Barrangou R, Banfield J, Doudna JA. | Nat Microbiol | 10.1038/s41564-022-01258-x | 2022 | |
| Filamentous Bacteriophage Produced by Pseudomonas aeruginosa Alters the Inflammatory Response and Promotes Noninvasive Infection In Vivo. | Secor PR, Michaels LA, Smigiel KS, Rohani MG, Jennings LK, Hisert KB, Arrigoni A, Braun KR, Birkland TP, Lai Y, Hallstrand TS, Bollyky PL, Singh PK, Parks WC. | Infect Immun | 10.1128/iai.00648-16 | 2017 | |
| Inorganic polyphosphate essential for lytic growth of phages P1 and fd. | Li L, Rao NN, Kornberg A. | Proc Natl Acad Sci U S A | 10.1073/pnas.0610763104 | 2007 | |
| Competition between conjugation and M13 phage infection in Escherichia coli in the absence of selection pressure: a kinetic study. | Wan Z, Goddard NL. | G3 (Bethesda) | 10.1534/g3.112.003418 | 2012 | |
| Accelerated detection of viral particles by combining AC electric field effects and micro-Raman spectroscopy. | Tomkins MR, Liao DS, Docoslis A. | Sensors (Basel) | 10.3390/s150101047 | 2015 | |
| Filamentous Bacteriophage Promote Biofilm Assembly and Function. | Secor PR, Sweere JM, Michaels LA, Malkovskiy AV, Lazzareschi D, Katznelson E, Rajadas J, Birnbaum ME, Arrigoni A, Braun KR, Evanko SP, Stevens DA, Kaminsky W, Singh PK, Parks WC, Bollyky PL. | Cell Host Microbe | 10.1016/j.chom.2015.10.013 | 2015 | |
| Male-specific coliphages as indicators of thermal inactivation of pathogens in biosolids. | Nappier SP, Aitken MD, Sobsey MD. | Appl Environ Microbiol | 10.1128/aem.72.4.2471-2475.2006 | 2006 | |
| Filamentous bacterial viruses. | Marvin DA, Hohn B. | Bacteriol Rev | 10.1128/br.33.2.172-209.1969 | 1969 |
| #3213 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8226 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #68368 | Automatically annotated from API 20E . |
| #124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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