Escherichia coli CCUG 11315 is a prokaryote of the family Enterobacteriaceae.
genome sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 38389_C01 assembly for Escherichia coli NCTC9009 | contig | 562 | 78.86 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 75.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 76.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 89.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.54 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 86.20 | no |
| 125438 | aerobic | aerobicⓘ | no | 60.07 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 73.90 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Ecotin, a microbial inhibitor of serine proteases, blocks multiple complement dependent and independent microbicidal activities of human serum. | Nagy ZA, Szakacs D, Boros E, Heja D, Vigh E, Sandor N, Jozsi M, Oroszlan G, Dobo J, Gal P, Pal G. | PLoS Pathog | 10.1371/journal.ppat.1008232 | 2019 | |
| Pathogenicity | Genome sequence of E. coli O104:H4 leads to rapid development of a targeted antimicrobial agent against this emerging pathogen. | Scholl D, Gebhart D, Williams SR, Bates A, Mandrell R. | PLoS One | 10.1371/journal.pone.0033637 | 2012 | |
| Metabolism | Photocatalytic disinfection using titanium dioxide: spectrum and mechanism of antimicrobial activity. | Foster HA, Ditta IB, Varghese S, Steele A. | Appl Microbiol Biotechnol | 10.1007/s00253-011-3213-7 | 2011 | |
| Characterization of the Shigella serotype D (S. sonnei) O polysaccharide and the enterobacterial R1 lipopolysaccharide core by use of mouse monoclonal antibodies. | Viret JF, Bruderer U, Lang AB. | Infect Immun | 10.1128/iai.60.7.2741-2747.1992 | 1992 | ||
| Use of the flagellar H7 gene as a target in multiplex PCR assays and improved specificity in identification of enterohemorrhagic Escherichia coli strains. | Gannon VP, D'Souza S, Graham T, King RK, Rahn K, Read S. | J Clin Microbiol | 10.1128/jcm.35.3.656-662.1997 | 1997 | ||
| Enzymology | Relatedness of a periplasmic, broad-specificity RNase from Aeromonas hydrophila to RNase I of Escherichia coli and to a family of eukaryotic RNases. | Favre D, Ngai PK, Timmis KN. | J Bacteriol | 10.1128/jb.175.12.3710-3722.1993 | 1993 | |
| The Antibacterial Efficacy of Far-UVC Light: A Combined-Method Study Exploring the Effects of Experimental and Bacterial Variables on Dose-Response. | Griffin DT, Gourlay T, Maclean M. | Pathogens | 10.3390/pathogens13080698 | 2024 | ||
| Enhancement of Contact Lens Disinfection by Combining Disinfectant with Visible Light Irradiation. | Hoenes K, Spellerberg B, Hessling M. | Int J Environ Res Public Health | 10.3390/ijerph17176422 | 2020 | ||
| Inactivation of bacterial pathogens following exposure to light from a 405-nanometer light-emitting diode array. | Maclean M, MacGregor SJ, Anderson JG, Woolsey G. | Appl Environ Microbiol | 10.1128/aem.01892-08 | 2009 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #45435 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11315 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive142178.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data