Escherichia coli CCUG 28 is a prokaryote of the family Enterobacteriaceae.
genome sequence| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 38389_B01 assembly for Escherichia coli NCTC9007 | contig | 562 | 77.69 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 71.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 79.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 78.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.62 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.20 | no |
| 125438 | aerobic | aerobicⓘ | no | 68.34 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 74.91 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Bacteriophage K1-5 encodes two different tail fiber proteins, allowing it to infect and replicate on both K1 and K5 strains of Escherichia coli. | Scholl D, Rogers S, Adhya S, Merril CR. | J Virol | 10.1128/jvi.75.6.2509-2515.2001 | 2001 | |
| Enzymology | Purification and in vitro activities of rabbit platelet microbicidal proteins. | Yeaman MR, Tang YQ, Shen AJ, Bayer AS, Selsted ME. | Infect Immun | 10.1128/iai.65.3.1023-1031.1997 | 1997 | |
| Synergistic effect of a recombinant N-terminal fragment of bactericidal/permeability-increasing protein and cefamandole in treatment of rabbit gram-negative sepsis. | Lin Y, Leach WJ, Ammons WS. | Antimicrob Agents Chemother | 10.1128/aac.40.1.65 | 1996 | ||
| Potent CD14-mediated signalling of human leukocytes by Escherichia coli can be mediated by interaction of whole bacteria and host cells without extensive prior release of endotoxin. | Katz SS, Chen K, Chen S, Doerfler ME, Elsbach P, Weiss J. | Infect Immun | 10.1128/iai.64.9.3592-3600.1996 | 1996 | ||
| Iontophoretic killing of Escherichia coli in static fluid and in a model catheter system. | Davis CP, Arnett D, Warren MM. | J Clin Microbiol | 10.1128/jcm.15.5.891-894.1982 | 1982 | ||
| Metabolism | Role of endotoxin in acute inflammation induced by gram-negative bacteria: specific inhibition of lipopolysaccharide-mediated responses with an amino-terminal fragment of bactericidal/permeability-increasing protein. | Kohn FR, Kung AH. | Infect Immun | 10.1128/iai.63.1.333-339.1995 | 1995 | |
| Pathogenicity | Human bactericidal/permeability-increasing protein and a recombinant NH2-terminal fragment cause killing of serum-resistant gram-negative bacteria in whole blood and inhibit tumor necrosis factor release induced by the bacteria. | Weiss J, Elsbach P, Shu C, Castillo J, Grinna L, Horwitz A, Theofan G. | J Clin Invest | 10.1172/jci115930 | 1992 | |
| Metabolism | Complement-independent adherence of Escherichia coli to complement receptors in vitro. | Fine DP, Harper BL, Carpenter ED, Davis CP, Cavallo T, Guckian JC. | J Clin Invest | 10.1172/jci109877 | 1980 | |
| Metabolism | Extracellular accumulation of potently microbicidal bactericidal/permeability-increasing protein and p15s in an evolving sterile rabbit peritoneal inflammatory exudate. | Weinrauch Y, Foreman A, Shu C, Zarember K, Levy O, Elsbach P, Weiss J. | J Clin Invest | 10.1172/jci117873 | 1995 | |
| Monoclonal antibodies show Listeria monocytogenes in necropsy tissue samples. | McLauchlin J, Black A, Green HT, Nash JQ, Taylor AG. | J Clin Pathol | 10.1136/jcp.41.9.983 | 1988 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #44099 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data