Escherichia coli FN98 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Enterobacteriaceae.
Gram-negative rod-shaped facultative anaerobe Bacteria| @ref 20215 |
Last LPSN update
2026-02-09 11:32:26 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| 34562 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 34562 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 34562 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 34562 | 17234 ChEBI | glucose | + | fermentation | |
| 34562 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 34562 | 17716 ChEBI | lactose | + | fermentation | |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 34562 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 34562 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | + | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 34562 | 17632 ChEBI | nitrate | + | reduction | |
| 34562 | 16301 ChEBI | nitrite | + | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | + | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 34562 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 34562 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 34562 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 34562 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 34562 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 34562 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 34562 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 34562 | ornithine decarboxylase | - | 4.1.1.17 | |
| 34562 | oxidase | - | ||
| 34562 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 34562 | tryptophan deaminase | - | ||
| 34562 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34562 | not determinedn.d. | + | - | + | + | + | + | - | + | - | + | + | + | + | - | + | - | + | + | + | - | - | + | - | - | - | - | - | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| Combination Effect of Engineered Endolysin EC340 With Antibiotics. | Hong HW, Kim YD, Jang J, Kim MS, Song M, Myung H. | Front Microbiol | 10.3389/fmicb.2022.821936 | 2022 | | |
| Pathogenicity | Serine Protease Autotransporters of the Enterobacteriaceae (SPATEs): Out and About and Chopping It Up. | Pokharel P, Habouria H, Bessaiah H, Dozois CM. | Microorganisms | 10.3390/microorganisms7120594 | 2019 | |
| Metabolism | Agitation down-regulates immunoglobulin binding protein EibG expression in Shiga toxin-producing Escherichia coli (STEC). | Kuczius T, Zhang W, Merkel V, Mellmann A, Tarr PI, Karch H. | PLoS One | 10.1371/journal.pone.0119583 | 2015 | |
| Pathogenicity | Bacteriophages of Shiga Toxin-Producing Escherichia coli and Their Contribution to Pathogenicity. | Rodriguez-Rubio L, Haarmann N, Schwidder M, Muniesa M, Schmidt H. | Pathogens | 10.3390/pathogens10040404 | 2021 | |
| Metabolism | Three new serine-protease autotransporters of Enterobacteriaceae (SPATEs) from extra-intestinal pathogenic Escherichia coli and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney. | Habouria H, Pokharel P, Maris S, Garenaux A, Bessaiah H, Houle S, Veyrier FJ, Guyomard-Rabenirina S, Talarmin A, Dozois CM. | Virulence | 10.1080/21505594.2019.1624102 | 2019 | |
| Metabolism | A new immunoglobulin-binding protein, EibG, is responsible for the chain-like adhesion phenotype of locus of enterocyte effacement-negative, shiga toxin-producing Escherichia coli. | Lu Y, Iyoda S, Satou H, Satou H, Itoh K, Saitoh T, Watanabe H. | Infect Immun | 10.1128/iai.00724-06 | 2006 | |
| Metabolism | Activation of prophage eib genes for immunoglobulin-binding proteins by genes from the IbrAB genetic island of Escherichia coli ECOR-9. | Sandt CH, Hopper JE, Hill CW. | J Bacteriol | 10.1128/jb.184.13.3640-3648.2002 | 2002 | |
| Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds. | Gutierrez A, Elez M, Clermont O, Denamur E, Matic I. | Nucleic Acids Res | 10.1093/nar/gkr050 | 2011 | | |
| Phylogeny | Identification of Escherichia coli O157:H7 genomic regions conserved in strains with a genotype associated with human infection. | Steele M, Ziebell K, Zhang Y, Benson A, Konczy P, Johnson R, Gannon V. | Appl Environ Microbiol | 10.1128/aem.00982-06 | 2007 | |
| Metabolism | Four different genes responsible for nonimmune immunoglobulin-binding activities within a single strain of Escherichia coli. | Sandt CH, Hill CW. | Infect Immun | 10.1128/iai.68.4.2205-2214.2000 | 2000 | |
| Metabolism | Nonimmune binding of human immunoglobulin A (IgA) and IgG Fc by distinct sequence segments of the EibF cell surface protein of Escherichia coli. | Sandt CH, Hill CW. | Infect Immun | 10.1128/iai.69.12.7293-7203.2001 | 2001 | |
| Genetics | Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes. | Rasmussen-Ivey CR, Hossain MJ, Odom SE, Terhune JS, Hemstreet WG, Shoemaker CA, Zhang D, Xu DH, Griffin MJ, Liu YJ, Figueras MJ, Santos SR, Newton JC, Liles MR. | Front Microbiol | 10.3389/fmicb.2016.01615 | 2016 | |
| Distribution and phylogeny of immunoglobulin-binding protein G in Shiga toxin-producing Escherichia coli and its association with adherence phenotypes. | Merkel V, Ohder B, Bielaszewska M, Zhang W, Fruth A, Menge C, Borrmann E, Middendorf B, Muthing J, Karch H, Mellmann A. | Infect Immun | 10.1128/iai.00006-10 | 2010 | | |
| Phylogeny | Autotransporter-encoding sequences are phylogenetically distributed among Escherichia coli clinical isolates and reference strains. | Restieri C, Garriss G, Locas MC, Dozois CM. | Appl Environ Microbiol | 10.1128/aem.01542-06 | 2007 | |
| Metabolism | Serine protease autotransporters of enterobacteriaceae (SPATEs): biogenesis and function. | Dautin N. | Toxins (Basel) | 10.3390/toxins2061179 | 2010 | |
| Diversity and host range of Shiga toxin-encoding phage. | Gamage SD, Patton AK, Hanson JF, Weiss AA. | Infect Immun | 10.1128/iai.72.12.7131-7139.2004 | 2004 | | |
| Genetics | Accessory DNA in the genomes of representatives of the Escherichia coli reference collection. | Hurtado A, Rodriguez-Valera F. | J Bacteriol | 10.1128/jb.181.8.2548-2554.1999 | 1999 | |
| Metabolism | Contribution of trimeric autotransporter C-terminal domains of oligomeric coiled-coil adhesin (Oca) family members YadA, UspA1, EibA, and Hia to translocation of the YadA passenger domain and virulence of Yersinia enterocolitica. | Ackermann N, Tiller M, Anding G, Roggenkamp A, Heesemann J. | J Bacteriol | 10.1128/jb.00161-08 | 2008 | |
| Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7. | Pickard D, Wain J, Baker S, Line A, Chohan S, Fookes M, Barron A, Gaora PO, Chabalgoity JA, Thanky N, Scholes C, Thomson N, Quail M, Parkhill J, Dougan G. | J Bacteriol | 10.1128/jb.185.17.5055-5065.2003 | 2003 | | |
| Characterization of Saa, a novel autoagglutinating adhesin produced by locus of enterocyte effacement-negative Shiga-toxigenic Escherichia coli strains that are virulent for humans. | Paton AW, Srimanote P, Woodrow MC, Paton JC. | Infect Immun | 10.1128/iai.69.11.6999-7009.2001 | 2001 | | |
| Metabolism | The CgrA and CgrC proteins form a complex that positively regulates cupA fimbrial gene expression in Pseudomonas aeruginosa. | McManus HR, Dove SL. | J Bacteriol | 10.1128/jb.05904-11 | 2011 | |
| Phylogeny | The link between phylogeny and virulence in Escherichia coli extraintestinal infection. | Picard B, Garcia JS, Gouriou S, Duriez P, Brahimi N, Bingen E, Elion J, Denamur E. | Infect Immun | 10.1128/iai.67.2.546-553.1999 | 1999 | |
| Metabolism | Collagen-like proteins in pathogenic E. coli strains. | Ghosh N, McKillop TJ, Jowitt TA, Howard M, Davies-Strickleton H, Holmes DF, Roberts IS, Bella J. | PLoS One | 10.1371/journal.pone.0037872 | 2012 | |
| Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins. | Hoiczyk E, Roggenkamp A, Reichenbecher M, Lupas A, Heesemann J. | EMBO J | 10.1093/emboj/19.22.5989 | 2000 | | |
| Pathogenesis and evolution of virulence in enteropathogenic and enterohemorrhagic Escherichia coli. | Donnenberg MS, Whittam TS. | J Clin Invest | 10.1172/jci12404 | 2001 | | |
| Metabolism | Local and global regulators linking anaerobiosis to cupA fimbrial gene expression in Pseudomonas aeruginosa. | Vallet-Gely I, Sharp JS, Dove SL. | J Bacteriol | 10.1128/jb.01344-07 | 2007 | |
| Barriers to intron promiscuity in bacteria. | Edgell DR, Belfort M, Shub DA. | J Bacteriol | 10.1128/jb.182.19.5281-5289.2000 | 2000 | | |
| Metabolism | Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA. | Iyer LM, Zhang D, Burroughs AM, Aravind L. | Nucleic Acids Res | 10.1093/nar/gkt573 | 2013 | |
| Enzymology | Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence. | Ruiz-Perez F, Nataro JP. | Cell Mol Life Sci | 10.1007/s00018-013-1355-8 | 2014 | |
| Metabolism | Type V protein secretion pathway: the autotransporter story. | Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D. | Microbiol Mol Biol Rev | 10.1128/mmbr.68.4.692-744.2004 | 2004 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive135442.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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