Escherichia coli RM60A is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe Bacteria| @ref 20215 |
Last LPSN update
2026-02-09 11:32:13 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| 32929 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 32929 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 32929 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 16813 ChEBI | galactitol | + | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 32929 | 17234 ChEBI | glucose | + | fermentation | |
| 32929 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 32929 | 17716 ChEBI | lactose | + | fermentation | |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 32929 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 32929 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 32929 | 17632 ChEBI | nitrate | + | reduction | |
| 32929 | 16301 ChEBI | nitrite | + | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 32929 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 32929 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 32929 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 32929 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 32929 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 32929 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 32929 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 32929 | ornithine decarboxylase | + | 4.1.1.17 | |
| 32929 | oxidase | - | ||
| 32929 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 32929 | tryptophan deaminase | - | ||
| 32929 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32929 | not determinedn.d. | + | - | +/- | + | + | + | - | - | - | + | + | + | + | - | + | + | - | + | + | - | - | + | - | +/- | +/- | +/- | - | + | + | + | + | + | - | - | + | - | - | - | - | - | - | - | - | + | - | - | + | - | - |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetic and biochemical characterization of CGB-1, an Ambler class B carbapenem-hydrolyzing beta-lactamase from Chryseobacterium gleum. | Bellais S, Naas T, Nordmann P. | Antimicrob Agents Chemother | 10.1128/aac.46.9.2791-2796.2002 | 2002 | | |
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| Co-Occurrence of NDM-5 and RmtB in a Clinical Isolate of Escherichia coli Belonging to CC354 in Latin America. | Costa A, Figueroa-Espinosa R, Gaudenzi F, Lincopan N, Fuga B, Ghiglione B, Gutkind G, Di Conza J. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.654852 | 2021 | | |
| Vesicle-enriched secretomes alter bacterial competitive abilities and are drivers of evolution in microbial communities. | Warsi OM, Gedda L, Edwards K, Andersson DI. | FEMS Microbiol Ecol | 10.1093/femsec/fiad141 | 2023 | | |
| Pathogenicity | Serine Protease Autotransporters of the Enterobacteriaceae (SPATEs): Out and About and Chopping It Up. | Pokharel P, Habouria H, Bessaiah H, Dozois CM. | Microorganisms | 10.3390/microorganisms7120594 | 2019 | |
| Enzymology | Cloning the hbs gene from Bacillus subtilis and expression of the HBsu protein in Escherichia coli. | Ghodsi S, Gharavi S, Ghadam P. | Iran J Microbiol | 2010 | | |
| Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds. | Gutierrez A, Elez M, Clermont O, Denamur E, Matic I. | Nucleic Acids Res | 10.1093/nar/gkr050 | 2011 | | |
| A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli. | Phan K, Ferenci T. | ISME J | 10.1038/ismej.2013.82 | 2013 | | |
| Phylogeny | High-resolution two-locus clonal typing of extraintestinal pathogenic Escherichia coli. | Weissman SJ, Johnson JR, Tchesnokova V, Billig M, Dykhuizen D, Riddell K, Rogers P, Qin X, Butler-Wu S, Cookson BT, Fang FC, Scholes D, Chattopadhyay S, Sokurenko E. | Appl Environ Microbiol | 10.1128/aem.06663-11 | 2012 | |
| Enzymology | Isolation of generalized transducing bacteriophages for uropathogenic strains of Escherichia coli. | Battaglioli EJ, Baisa GA, Weeks AE, Schroll RA, Hryckowian AJ, Welch RA. | Appl Environ Microbiol | 10.1128/aem.05307-11 | 2011 | |
| Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination. | Milkman R, Jaeger E, McBride RD. | Genetics | 10.1093/genetics/163.2.475 | 2003 | | |
| Enzymology | Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli. | Hill J, Beriwal S, Chandra I, Paul VK, Kapil A, Singh T, Wadowsky RM, Singh V, Goyal A, Jahnukainen T, Johnson JR, Tarr PI, Vats A. | J Clin Microbiol | 10.1128/jcm.00152-08 | 2008 | |
| Enzymology | Distribution of endogenous gammaretroviruses and variants of the Fv1 restriction gene in individual mouse strains and strain subgroups. | Skorski M, Bamunusinghe D, Liu Q, Shaffer E, Kozak CA. | PLoS One | 10.1371/journal.pone.0219576 | 2019 | |
| Metabolism | Localization of DING proteins on PstS-containing outer-surface appendages of Pseudomonas aeruginosa. | Shah M, Zaborin A, Alverdy JC, Scott K, Zaborina O. | FEMS Microbiol Lett | 10.1111/1574-6968.12368 | 2014 | |
| The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. | Ren CP, Beatson SA, Parkhill J, Pallen MJ. | J Bacteriol | 10.1128/jb.187.4.1430-1440.2005 | 2005 | | |
| Metabolism | Nonimmune binding of human immunoglobulin A (IgA) and IgG Fc by distinct sequence segments of the EibF cell surface protein of Escherichia coli. | Sandt CH, Hill CW. | Infect Immun | 10.1128/iai.69.12.7293-7203.2001 | 2001 | |
| Pseudomonas aeruginosa AlgR regulates type IV pilus biosynthesis by activating transcription of the fimU-pilVWXY1Y2E operon. | Belete B, Lu H, Wozniak DJ. | J Bacteriol | 10.1128/jb.01623-07 | 2008 | | |
| Natural populations of Escherichia coli and Salmonella typhimurium harbor the same classes of insertion sequences. | Bisercic M, Ochman H. | Genetics | 10.1093/genetics/133.3.449 | 1993 | | |
| Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB. | Stoltzfus A, Leslie JF, Milkman R. | Genetics | 10.1093/genetics/120.2.345 | 1988 | | |
| Metabolism | Four different genes responsible for nonimmune immunoglobulin-binding activities within a single strain of Escherichia coli. | Sandt CH, Hill CW. | Infect Immun | 10.1128/iai.68.4.2205-2214.2000 | 2000 | |
| Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. | Milkman R, Bridges MM. | Genetics | 10.1093/genetics/126.3.505 | 1990 | | |
| Enzymology | Rdp1, a novel zinc finger protein, regulates the DNA damage response of rhp51(+) from Schizosaccharomyces pombe. | Shim YS, Jang YK, Lim MS, Lee JS, Seong RH, Hong SH, Park SD. | Mol Cell Biol | 10.1128/mcb.20.23.8958-8968.2000 | 2000 | |
| Pathogenicity | Interferon-induced 56,000 Mr protein and its mRNA in human cells: molecular cloning and partial sequence of the cDNA. | Chebath J, Merlin G, Metz R, Benech P, Revel M. | Nucleic Acids Res | 10.1093/nar/11.5.1213 | 1983 | |
| In vitro molecular genetics as a tool for determining the differential cleavage specificities of the poliovirus 3C proteinase. | Ypma-Wong MF, Semler BL. | Nucleic Acids Res | 10.1093/nar/15.5.2069 | 1987 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive134540.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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