Escherichia coli NCTC 13476 is an aerobe, mesophilic prokaryote of the family Enterobacteriaceae.
aerobe mesophilic genome sequence| @ref 20215 |
Last LPSN update
2026-02-09 11:37:57 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.7 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | - | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63394 | + | - | + | - | - | + | - | - | + | - | + | + | - | - | + | - | + | - | + | + | - | + | - | - | + | + | + | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | P15-U63 assembly for Escherichia coli NCTC 13476 | scaffold | GCA_020251585   | 562.80736  | 562 | 56.09 | |
| 66792 | 33119_H01 assembly for Escherichia coli NCTC13476 | contig | GCA_900706925 | 562.48258 | 562 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Optimized methods for the targeted surveillance of extended-spectrum beta-lactamase-producing Escherichia coli in human stool. | Gallichan S, Forrest S, Picton-Barlow E, McKeown C, Moore M, Heinz E, Feasey NA, Lewis JM, Graf FE. | Microbiol Spectr | 10.1128/spectrum.01058-24 | 2025 | | |
| Characterization of Carbapenem-Resistant Gram-Negative Bacilli Isolates in Multispecialty Private Hospitals in Lagos, Nigeria. | Salau M, Kositanont U, Noisumdaeng P, Ogunsola F, Ettu AO, Adewojo D, Ojimma C, Ojomaikre O, Changkaew K. | Infect Dis Rep | 10.3390/idr17050119 | 2025 | | |
| Phenotypic Ultra-Rapid Antimicrobial Susceptibility Testing for Ceftazidime-Avibactam: In Support of Antimicrobial Stewardship. | Martins-Oliveira I, Perez-Viso B, Gomes R, Abreu D, Silva-Dias A, Canton R, Pina-Vaz C. | Microorganisms | 10.3390/microorganisms13020414 | 2025 | | |
| Evaluation of the NG-Test CARBA 5 Lateral Flow Assay with an IMP-27-Producing Morganella morganii and Other Morganellaceae. | Tarlton NJ, Wallace MA, Potter RF, Zhang K, Dantas G, Dubberke ER, Burnham CD, Yarbrough ML. | Microbiol Spectr | 10.1128/spectrum.00793-23 | 2023 | | |
| Improving Turnaround Times for Routine Antimicrobial Sensitivity Testing Following European Committee on Antimicrobial Susceptibility Testing Methodology in Patients with Bacteraemia. | Edmondson R, Saeed K, Green S, O'Dwyer M. | Antibiotics (Basel) | 10.3390/antibiotics13111094 | 2024 | | |
| Predominance of blaNDM- and blaIMP-Harboring Escherichia coli Belonging to Clonal Complexes 131 and 23 in a Major University Hospital. | Shafiq M, Ahmed I, Saeed M, Malik A, Fatima S, Akhtar S, Khurshid M, Hyder MZ. | Medicina (Kaunas) | 10.3390/medicina60091528 | 2024 | | |
| Direct Ethylenediaminetetraaceticacid-Modified beta-Lactam Inactivation Method: An Improved Method to Identify Serine-Carbapenemase-, Metallo-beta-Lactamase-, and Extended-Spectrum-beta-Lactamase-Producing Enterobacterales Directly from Positive Blood Culture. | Bianco G, Boattini M, Iannaccone M, Zanotto E, Cavallo R, Costa C. | Microb Drug Resist | 10.1089/mdr.2020.0343 | 2021 | | |
| Genetics | Saccharin disrupts bacterial cell envelope stability and interferes with DNA replication dynamics. | de Dios R, Gadar K, Proctor CR, Maslova E, Han J, Soliman MAN, Krawiel D, Dunbar EL, Singh B, Peros S, Killelea T, Warnke AL, Haugland MM, Bolt EL, Lentz CS, Rudolph CJ, McCarthy RR. | EMBO Mol Med | 10.1038/s44321-025-00219-1 | 2025 | |
| Detection of rare carbapenemases in Enterobacterales-comparison of two colorimetric and three CIM-based carbapenemase assays. | Schaffarczyk L, Noster J, Stelzer Y, Sattler J, Gatermann S, Hamprecht A. | Microbiol Spectr | 10.1128/spectrum.03015-23 | 2024 | | |
| Performance of Flow Cytometry-Based Rapid Assay in Detection of Carbapenemase-Producing Enterobacterales. | Perez-Viso B, Martins-Oliveira I, Gomes R, Silva-Dias A, Peixe L, Novais A, Pina-Vaz C, Canton R. | Int J Mol Sci | 10.3390/ijms25147888 | 2024 | | |
| TP0586532, a Novel Non-Hydroxamate LpxC Inhibitor: Potentiating Effect on In Vitro Activity of Meropenem against Carbapenem-Resistant Enterobacteriaceae. | Yoshida I, Takata I, Fujita K, Takashima H, Sugiyama H. | Microbiol Spectr | 10.1128/spectrum.00828-22 | 2022 | | |
| Multidrug-Resistant Enteropathogenic Escherichia coli Isolated from Diarrhoeic Calves, Milk, and Workers in Dairy Farms: A Potential Public Health Risk. | Eldesoukey IE, Elmonir W, Alouffi A, Beleta EIM, Kelany MA, Elnahriry SS, Alghonaim MI, alZeyadi ZA, Elaadli H. | Antibiotics (Basel) | 10.3390/antibiotics11080999 | 2022 | | |
| Artificial sweeteners inhibit multidrug-resistant pathogen growth and potentiate antibiotic activity. | de Dios R, Proctor CR, Maslova E, Dzalbe S, Rudolph CJ, McCarthy RR. | EMBO Mol Med | 10.15252/emmm.202216397 | 2023 | | |
| Biofilm and Gene Expression Characteristics of the Carbapenem-Resistant Enterobacterales, Escherichia coli IMP, and Klebsiella pneumoniae NDM-1 Associated with Common Bacterial Infections. | Al-Bayati M, Samarasinghe S. | Int J Environ Res Public Health | 10.3390/ijerph19084788 | 2022 | | |
| Genetics | Multidrug-resistant Escherichia coli isolated from patients and surrounding hospital environments in Bangladesh: A molecular approach for the determination of pathogenicity and resistance. | Moniruzzaman M, Hussain MT, Ali S, Hossain M, Hossain MS, Alam MAU, Galib FC, Islam MT, Paul P, Islam MS, Siddiqee MH, Mondal D, Parveen S, Mahmud ZH. | Heliyon | 10.1016/j.heliyon.2023.e22109 | 2023 | |
| Restoring carbapenem efficacy: a novel carbapenem companion targeting metallo-beta-lactamases in carbapenem-resistant Enterobacterales. | Ooi N, Lee VE, Chalam-Judge N, Newman R, Wilkinson AJ, Cooper IR, Orr D, Lee S, Savage VJ. | J Antimicrob Chemother | 10.1093/jac/dkaa455 | 2021 | | |
| In Vitro Antimicrobial Activity of the Decontaminant HybenX® Compared to Chlorhexidine and Sodium Hypochlorite against Common Bacterial and Yeast Pathogens. | Antonelli A, Giovannini L, Baccani I, Giuliani V, Pace R, Rossolini GM. | Antibiotics (Basel) | 10.3390/antibiotics8040188 | 2019 | | |
| Molecular Detection of Antibiotic-Resistant Genes in Pseudomonas aeruginosa from Nonclinical Environment: Public Health Implications in Mthatha, Eastern Cape Province, South Africa. | Hosu MC, Vasaikar S, Okuthe GE, Apalata T. | Int J Microbiol | 10.1155/2021/8861074 | 2021 | | |
| Prevalence, antimicrobial resistance, and genotyping of Shiga toxin-producing Escherichia coli in foods of cattle origin, diarrheic cattle, and diarrheic humans in Egypt. | Elmonir W, Shalaan S, Tahoun A, Mahmoud SF, Remela EMA, Eissa R, El-Sharkawy H, Shukry M, Zahran RN. | Gut Pathog | 10.1186/s13099-021-00402-y | 2021 | | |
| Evaluation of FASTinov Ultrarapid Flow Cytometry Antimicrobial Susceptibility Testing Directly from Positive Blood Cultures. | Silva-Dias A, Perez-Viso B, Martins-Oliveira I, Gomes R, Rodrigues AG, Canton R, Pina-Vaz C. | J Clin Microbiol | 10.1128/jcm.00544-21 | 2021 | | |
| Detection of extended spectrum beta-lactamase genes in Pseudomonas aeruginosa isolated from patients in rural Eastern Cape Province, South Africa. | Hosu MC, Vasaikar SD, Okuthe GE, Apalata T. | Sci Rep | 10.1038/s41598-021-86570-y | 2021 | | |
| Prevalence and Characterization of Beta-Lactam and Carbapenem-Resistant Bacteria Isolated from Organic Fresh Produce Retailed in Eastern Spain. | Jimenez-Belenguer AI, Ferrus MA, Hernandez M, Garcia-Hernandez J, Moreno Y, Castillo MA. | Antibiotics (Basel) | 10.3390/antibiotics12020387 | 2023 | | |
| Plasmid Profiling and Occurrence of beta-Lactamase Enzymes in Multidrug-Resistant Uropathogenic Escherichia coli in Kathmandu, Nepal. | Thapa Shrestha U, Shrestha S, Adhikari N, Rijal KR, Shrestha B, Adhikari B, Banjara MR, Ghimire P. | Infect Drug Resist | 10.2147/idr.s250591 | 2020 | | |
| Molecular Detection of Carbapenemase-Encoding Genes in Multidrug-Resistant Acinetobacter baumannii Clinical Isolates in South Africa. | Anane YA, Apalata T, Vasaikar S, Okuthe GE, Songca S. | Int J Microbiol | 10.1155/2020/7380740 | 2020 | | |
| Evaluation of the Immunochromatographic NG-Test Carba 5, RESIST-5 O.O.K.N.V., and IMP K-SeT for Rapid Detection of KPC-, NDM-, IMP-, VIM-type, and OXA-48-like Carbapenemase Among Enterobacterales. | Han R, Guo Y, Peng M, Shi Q, Wu S, Yang Y, Zheng Y, Yin D, Hu F. | Front Microbiol | 10.3389/fmicb.2020.609856 | 2020 | | |
| Enzymology | Detection of metallo-beta-lactamases-encoding genes among clinical isolates of Pseudomonas aeruginosa in a tertiary care hospital, Kathmandu, Nepal. | Acharya M, Joshi PR, Thapa K, Aryal R, Kakshapati T, Sharma S. | BMC Res Notes | 10.1186/s13104-017-3068-9 | 2017 | |
| Insights into the Resistome and Phylogenomics of a ST195 Multidrug-Resistant Acinetobacter baumannii Clinical Isolate from the Czech Republic. | Mlynarcik P, Dolejska M, Vagnerova I, Petrzelova J, Sukkar I, Zdarska V, Kolar M. | Life (Basel) | 10.3390/life11101079 | 2021 | | |
| Primer Evaluation for PCR and its Application for Detection of Carbapenemases in Enterobacteriaceae. | Mlynarcik P, Roderova M, Kolar M. | Jundishapur J Microbiol | 10.5812/jjm.29314 | 2016 | | |
| Image-based real-time feedback control of magnetic digital microfluidics by artificial intelligence-empowered rapid object detector for automated in vitro diagnostics. | Tang Y, Duan F, Zhou A, Kanitthamniyom P, Luo S, Hu X, Jiang X, Vasoo S, Zhang X, Zhang Y. | Bioeng Transl Med | 10.1002/btm2.10428 | 2023 | | |
| Pathogenicity | Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies. | Gunzer F, Rudolph WW, Bunk B, Schober I, Peters S, Muller T, Oberheitmann B, Schrottner P. | Emerg Microbes Infect | 10.1038/s41426-018-0061-x | 2018 | |
| Coexistence of metallo-beta-lactamase-encoding genes in Pseudomonas aeruginosa. | Mohanam L, Menon T. | Indian J Med Res | 10.4103/ijmr.ijmr_29_16 | 2017 | | |
| Pathogenicity | The emergence of carbapenem-resistant Klebsiella pneumoniae isolates producing OXA-48 and NDM in the Southern (Asir) province, Saudi Arabia. | Al-Zahrani IA, Alsiri BA. | Saudi Med J | 10.15537/smj.2018.1.21094 | 2018 | |
| Evaluation of NG-Test Carba 5 for Rapid Phenotypic Detection and Differentiation of Five Common Carbapenemase Families: Results of a Multicenter Clinical Evaluation. | Jenkins S, Ledeboer NA, Westblade LF, Burnham CA, Faron ML, Bergman Y, Yee R, Mesich B, Gerstbrein D, Wallace MA, Robertson A, Fauntleroy KA, Klavins AS, Malherbe R, Hsiung A, Simner PJ. | J Clin Microbiol | 10.1128/jcm.00344-20 | 2020 | | |
| Enzymology | Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections. | Gadsby NJ, McHugh MP, Russell CD, Mark H, Conway Morris A, Laurenson IF, Hill AT, Templeton KE. | Clin Microbiol Infect | 10.1016/j.cmi.2015.05.004 | 2015 | |
| Enzymology | Evaluation of a new phenotypic OXA-48 disk test for differentiation of OXA-48 carbapenemase-producing Enterobacteriaceae clinical isolates. | Tsakris A, Poulou A, Bogaerts P, Dimitroulia E, Pournaras S, Glupczynski Y. | J Clin Microbiol | 10.1128/jcm.03318-14 | 2015 | |
| Enzymology | Molecular characterization of beta-lactamase genes in clinical isolates of carbapenem-resistant Acinetobacter baumannii. | Raible KM, Sen B, Law N, Bias TE, Emery CL, Ehrlich GD, Joshi SG. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-017-0248-3 | 2017 | |
| Metabolism | Comparative evaluation of combined-disk tests using different boronic acid compounds for detection of klebsiella pneumoniae carbapenemase-producing enterobacteriaceae clinical isolates. | Tsakris A, Themeli-Digalaki K, Poulou A, Vrioni G, Voulgari E, Koumaki V, Agodi A, Pournaras S, Sofianou D. | J Clin Microbiol | 10.1128/jcm.00666-11 | 2011 | |
| Development of Dicationic Bisguanidine-Arylfuran Derivatives as Potent Agents against Gram-Negative Bacteria. | Bourgard C, Rodriguez-Hernandez D, Rudenko A, Rutgersson C, Palm M, Larsson DGJ, Farewell A, Grotli M, Sunnerhagen P. | Antibiotics (Basel) | 10.3390/antibiotics11081115 | 2022 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive156939.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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