Escherichia coli ST18 is a bacterium that was isolated from laboratory strain design.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 16114 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 16114 | positive | growth | 37 |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|
| 16114 | laboratory strain design | Germany | DEU | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM1433852v1 assembly for Escherichia coli ST18 | complete | 562 | 98.71 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.78 | no |
| 125438 | aerobic | aerobicⓘ | no | 58.92 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 88.45 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 75.36 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| UltraCAST: A Flexible All-In-One Suicide Vector for Modifying Bacterial Genomes Using a CRISPR-Associated Transposon. | VanDieren AJ, Barrick JE. | MicroPubl Biol | 10.17912/micropub.biology.001721 | 2025 | ||
| Genetics | Editing the Serratia proteamaculans Genome Using the Allelic Exchange Method. | Chukhontseva K, Karaseva M, Komissarov A, Demidyuk I. | Bio Protoc | 10.21769/bioprotoc.5448 | 2025 | |
| Rewiring Escherichia coli to transform formate into methyl groups. | Mohr MKF, Satanowski A, Lindner SN, Erb TJ, Andexer JN. | Microb Cell Fact | 10.1186/s12934-025-02674-4 | 2025 | ||
| 7beta-Hydroxysteroid dehydratase Hsh3 eliminates the 7-hydroxy group of the bile salt ursodeoxycholate during degradation by Sphingobium sp. strain Chol11 and other Sphingomonadaceae. | Richtsmeier P, Nedielkov R, Haring M, Yucel O, Elsner L, Lulf RH, Wohlbrand L, Rabus R, Moeller H, Philipp B, Mueller FM. | Appl Environ Microbiol | 10.1128/aem.00185-25 | 2025 | ||
| Protealysin Targets the Bacterial Housekeeping Proteins FtsZ and RecA. | Tsaplina O, Khaitlina S, Chukhontseva K, Karaseva M, Demidyuk I, Bakhlanova I, Baitin D, Artamonova T, Vedyaykin A, Khodorkovskii M, Vishnyakov I. | Int J Mol Sci | 10.3390/ijms231810787 | 2022 | ||
| The role of the gamma subunit in the photosystem of the lowest-energy phototrophs. | Namoon D, Rudling NM, Canniffe DP. | Biochem J | 10.1042/bcj20220508 | 2022 | ||
| Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. | Li L, Huang D, Hu Y, Rudling NM, Canniffe DP, Wang F, Wang Y. | Nat Commun | 10.1038/s41467-023-42193-7 | 2023 | ||
| Metabolism | Comparative Analysis of Bile-Salt Degradation in Sphingobium sp. Strain Chol11 and Pseudomonas stutzeri Strain Chol1 Reveals Functional Diversity of Proteobacterial Steroid Degradation Enzymes and Suggests a Novel Pathway for Side Chain Degradation. | Feller FM, Richtsmeier P, Wege M, Philipp B. | Appl Environ Microbiol | 10.1128/aem.01453-21 | 2021 |
| #16114 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22074 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive4915.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data