Name: Escherichia coli Crooks
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4433

Type strain:

Species: Escherichia coli

Strain Designation: Crooks

Culture col. no.: DSM 1576, ATCC 8739, NCIB 8545, WDCM 00012, CCUG 10979, CIP 53.126, NCTC 12923, CCM 4517

Strain history: <- ATCC <- L.C. Gunsalus, strain Crooks <- G.C. Crooks

NCBI tax ID(s): 481805 (strain), 562 (species)

Other strains from Escherichia coli

Section

Escherichia coli Crooks is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from faeces.

antibiotic resistance
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia coli**
	Full Scientific Name (LPSN)	Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Bacillus coli"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.975

[Ref.: #69480]	Motility	yes Confidence in %97.163

Information on culture and growth conditions Culture and growth conditions

[Ref.: #826]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #826]

Culture medium growth

[Ref.: #826]

Culture medium link

Medium recipe at MediaDive

[Ref.: #826]

Culture medium composition

expand / minimize

[Ref.: #41827]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41827]

Culture medium growth

[Ref.: #41827]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #826]	growth	37 °C
[Ref.: #41827]	growth	30 °C
[Ref.: #45377]	growth	30-37 °C

[Ref.: #826]	Temperature range	mesophilic
[Ref.: #41827]	Temperature range	mesophilic
[Ref.: #45377]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Test 5

Test 6

Test 7

Test 8

Reference

[Ref.: #826]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
6
resistant0
20
30
24
20
26
36
34
32
26
28
24
24
6
10
resistant0
36
36
14
28
24
resistant0
14
22-24
20
20
32
resistant0
36
32
6
resistant0
resistant0
resistant0
24-26

[Ref.: #826]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
8
resistant0
20
30
22
20
24-26
36
34
32
26
28
22
26
resistant0
10-12
resistant0
34
34
12
26
22-24
resistant0
14
24
20
20
32
resistant0
38
32-34
resistant0
8
resistant0
resistant0
24

[Ref.: #826]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
6
resistant0
20
30
24
20
26
36
34
32
24
28
22
26
resistant0
10-12
resistant0
36
36
12
28
22
resistant0
14
24
20
18-20
34
resistant0
36
30-32
6
8
resistant0
resistant0
24

[Ref.: #826]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
6
resistant0
20
30
24
20-22
26-28
36
36
32
28-30
28-30
26
26
resistant0
10
resistant0
36
38
14-16
28
24
resistant0
16
22
20
22
34-36
resistant0
38
36
6
resistant0
resistant0
resistant0
26

[Ref.: #826]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
8
resistant0
20
30
24-26
22
28
38
38
34
28
30
24
24-26
resistant0
10-12
resistant0
38
38
14-16
30
24-26
resistant0
14
34
20
20
36
resistant0
38-40
36
resistant0
resistant0
resistant0
resistant0
24-26

[Ref.: #826]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
6
resistant0
20
26-28
22
18
26
32
32
30
26
26-28
20-22
24
6
10
resistant0
34
32-34
12
26
20-22
resistant0
14
22
18-20
20
30
resistant0
34
32-34
6-8
resistant0
resistant0
resistant0
22

[Ref.: #826]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
6
resistant0
20
26-28
22
18
26
32
32
30
26
26-28
20-22
24
6
10
resistant0
34
32-34
12
26
20-22
resistant0
14
22
18-20
20
30
resistant0
34
32-34
6-8
resistant0
resistant0
resistant0
22

[Ref.: #826]
Mueller Hinton
30

aerob
yes
Inhibition zone diameter in mm
8
resistant0
20-22
32
26
24
28
40
40
32
28
30-32
24
22
resistant0
12
resistant0
40
40
16
30
22
resistant0
16
22
20
22
38
resistant0
36
36-38
resistant0
resistant0
resistant0
resistant0
26

Only first 15 entries are displayed. Click here to see all.

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.657

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	D-mannitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68374]	L-arabinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	lysine ChEBI	+	degradation	* from API ID32E, API 20E
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E, API 20E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	trehalose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	+	energy source	* from API ID32E, API 20E
[Ref.: #68374]	urea ChEBI	-	hydrolysis	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68374]	indole ChEBI	* from API ID32E, API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68374]		indole ChEBI		+	* from API ID32E, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	+	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	+	3.2.1.31	* from API ID32E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	+	4.1.1.18	* from API ID32E, API 20E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E, API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #826]	14690	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14689	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14688	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14687	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14686	+	+	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14685	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #826]	14684	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #45377]	584	-	-	+	-	-	+	-	-	+	+	+	+	-	-	+	-	+	-	+	+	-	+	-	-	+	+	+	-	-	-	-	-
[Ref.: #45377]	585	-	-	+	-	-	+	-	-	+	+	+	+	-	-	+	-	+	-	+	+	-	+	-	-	+	+	+	-	-	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #826]	Sample type/isolated from	faeces

[Ref.: #45377]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host Body Product

#Gastrointestinal tract

#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #826]	Pathogenicity (human)	yes
[Ref.: #826]	Pathogenicity (animal)	yes
[Ref.: #826]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia coli ATCC 8739 ATCC 8739	GCA_026016785	complete	GenBank	481805 tax ID	*
[Ref.: #66792]	Escherichia coli ATCC 8739 ATCC 8739	GCA_003591595	complete	GenBank	481805 tax ID	*
[Ref.: #66792]	Escherichia coli ATCC 8739 ATCC 8739	GCA_000019385	complete	GenBank	481805 tax ID	*
[Ref.: #66792]	Escherichia coli NCTC12923	GCA_900448245	contig	GenBank	562 tax ID	*
[Ref.: #66792]	Escherichia coli ATCC 8739	GCA_001997065	scaffold	GenBank	562 tax ID	*
[Ref.: #66792]	Escherichia coli ATCC 8739	481805.51	complete	PATRIC	481805 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli ATCC 8739 ATCC 8739 NCBI: GCA_000019385.1
[Ref.: #69480]	spore-forming	no	99.657	yes
[Ref.: #69480]	anaerobic	no	93.765	no
[Ref.: #69480]	gram-positive	no	99.975	yes
[Ref.: #69480]	thermophile	no	98.804	yes
[Ref.: #69480]	motile	yes	97.163	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli ATCC 8739 ATCC 8739 NCBI: GCA_000019385.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #826]

Culture collection no.

DSM 1576, ATCC 8739, NCIB 8545, WDCM 00012, CCUG 10979, CIP 53.126, NCTC 12923, CCM 4517

References

#826	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1576

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41827 ; Curators of the CIP;
#45377 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 10979

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#68374

Automatically annotated from API ID32E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Escherichia coli in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Escherichia coli ATCC 8739 ATCC 8739

Escherichia coli ATCC 8739 ATCC 8739

Change proposal

Change proposal