Escherichia coli (CIP 107680, ATCC 700078)
Escherichia coli CIP 107680 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from Mutant of ATCC 13706.
Gram-negative rod-shaped facultative anaerobe BacteriaName and taxonomic classification
| @ref 20215 |
Last LPSN update
2026-05-29 08:38:20 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
Physiology and metabolism
Oxygen tolerance
| 32777 | Oxygen tolerancefacultative anaerobe |
Metabolite utilization
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 32777 | 16947 ChEBI | citrate | - | carbon source | |
| 32777 | 4853 ChEBI | esculin | + | hydrolysis | |
| 32777 | 17234 ChEBI | glucose | + | fermentation | |
| 32777 | 17716 ChEBI | lactose | + | fermentation | |
| 32777 | 15792 ChEBI | malonate | - | assimilation | |
| 32777 | 29864 ChEBI | mannitol | + | fermentation | |
| 32777 | 17632 ChEBI | nitrate | + | reduction | |
| 32777 | 16301 ChEBI | nitrite | + | reduction | |
| 32777 | 132112 ChEBI | sodium thiosulfate | - | builds gas from |
Antibiotic resistance
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 32777 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
Metabolite tests
Enzymes
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 32777 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 32777 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 32777 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 32777 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 32777 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 32777 | ornithine decarboxylase | - | 4.1.1.17 | |
| 32777 | oxidase | - | ||
| 32777 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 32777 | tryptophan deaminase | - | ||
| 32777 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
API zym
API biotype100
Literature
Literature 
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Bacteriophages pass through candle-shaped porous ceramic filters: Application for the collection of viruses in soil water. | Florent P, Cauchie HM, Herold M, Ogorzaly L. | Microbiologyopen | 10.1002/mbo3.1314 | 2022 | |
| Bacteriophages as Fecal Pollution Indicators. | Toribio-Avedillo D, Blanch AR, Muniesa M, Rodriguez-Rubio L. | Viruses | 10.3390/v13061089 | 2021 | | |
| Enzymology | Exploring the Microbial Ecology of Water in Sub-Saharan Africa and the Potential of Bacteriophages in Water Quality Monitoring and Treatment to Improve Its Safety. | Obong'o BO, Ogutu FO, Hurley SK, Okiko GM, Mahony J. | Viruses | 10.3390/v16121897 | 2024 | |
| Complete Genome Sequence of a Shiga Toxin-Converting Bacteriophage, Escherichia Phage Lys12581Vzw, Induced from an Outbreak Shiga Toxin-Producing Escherichia coli Strain. | Zhang Y, Liao YT, Salvador A, Sun X, Wu VCH. | Microbiol Resour Announc | 10.1128/mra.00793-19 | 2019 | | |
| Bactericide Activity of Cellulose Acetate/Silver Nanoparticles Asymmetric Membranes: Surfaces and Porous Structures Role. | Figueiredo AS, Ferraria AM, Botelho do Rego AM, Monteiro S, Santos R, Minhalma M, Sanchez-Loredo MG, Tovar-Tovar RL, de Pinho MN. | Membranes (Basel) | 10.3390/membranes13010004 | 2022 | | |
| Bacteriophages immunomodulate the response of monocytes. | Perea L, Rodriguez-Rubio L, Nieto JC, Zamora C, Canto E, Soriano G, Poca M, Blanco-Picazo P, Navarro F, Muniesa M, Vidal S. | Exp Biol Med (Maywood) | 10.1177/1535370221995154 | 2021 | | |
| Efficacy of Erwinia amylovora and Xanthomonas campestris pv campestris phages to control fire blight and black rot in vivo. | Vique G, Mendoza-Barbera E, Ramos-Barbero MD, Blanco-Picazo P, Sala-Comorera L, Quiros P, Atares S, Salaet I, Muniesa M, Rodriguez-Rubio L. | Microbiol Spectr | 10.1128/spectrum.00280-25 | 2025 | | |
| Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples. | Bothma L, Gonzalez-Ibeas D, Mienie C, Bezuidenhout CC, Adeleke R. | Genome Announc | 10.1128/genomea.00372-18 | 2018 | | |
| Dominance of phage particles carrying antibiotic resistance genes in the viromes of retail food sources. | Blanco-Picazo P, Morales-Cortes S, Ramos-Barbero MD, Garcia-Aljaro C, Rodriguez-Rubio L, Muniesa M. | ISME J | 10.1038/s41396-022-01338-0 | 2023 | | |
| Chicken liver is a potential reservoir of bacteriophages and phage-derived particles containing antibiotic resistance genes. | Blanco-Picazo P, Gomez-Gomez C, Aguilo-Castillo S, Fernandez-Orth D, Cerda-Cuellar M, Muniesa M, Rodriguez-Rubio L. | Microb Biotechnol | 10.1111/1751-7915.14056 | 2022 | | |
| Inactivation of helminth eggs in an electro-Fenton reactor: Towards full electrochemical disinfection of human waste using activated carbon. | Robles I, Becerra E, Barrios JA, Maya C, Jimenez B, Rodriguez-Valadez FJ, Rivera F, Garcia-Espinoza JD, Godinez LA. | Chemosphere | 10.1016/j.chemosphere.2020.126260 | 2020 | | |
| Antibiotic Resistance Genes in Phage Particles from Antarctic and Mediterranean Seawater Ecosystems. | Blanco-Picazo P, Roscales G, Toribio-Avedillo D, Gomez-Gomez C, Avila C, Balleste E, Muniesa M, Rodriguez-Rubio L. | Microorganisms | 10.3390/microorganisms8091293 | 2020 | | |
| Enzymology | Infectious phage particles packaging antibiotic resistance genes found in meat products and chicken feces. | Gomez-Gomez C, Blanco-Picazo P, Brown-Jaque M, Quiros P, Rodriguez-Rubio L, Cerda-Cuellar M, Muniesa M. | Sci Rep | 10.1038/s41598-019-49898-0 | 2019 | |
| Phylogeny | Recruitment of complete crAss-like phage genomes reveals their presence in chicken viromes, few human-specific phages, and lack of universal detection. | Ramos-Barbero MD, Gomez-Gomez C, Vique G, Sala-Comorera L, Rodriguez-Rubio L, Muniesa M. | ISME J | 10.1093/ismejo/wrae192 | 2024 | |
| Upscaling Transport of Bacillus subtilis Endospores and Coliphage phiX174 in Heterogeneous Porous Media from the Column to the Field Scale. | Oudega TJ, Lindner G, Derx J, Farnleitner AH, Sommer R, Blaschke AP, Stevenson ME. | Environ Sci Technol | 10.1021/acs.est.1c01892 | 2021 | | |
| A One Health Perspective for Defining and Deciphering Escherichia coli Pathogenic Potential in Multiple Hosts. | Garcia A, Fox JG. | Comp Med | 10.30802/aalas-cm-20-000054 | 2021 | | |
| Enzymology | Contribution of cropland to the spread of Shiga toxin phages and the emergence of new Shiga toxin-producing strains. | Quiros P, Muniesa M. | Sci Rep | 10.1038/s41598-017-08169-6 | 2017 | |
| Occurrence of coliphage in raw wastewater and in ambient water: A meta-analysis. | Nappier SP, Hong T, Ichida A, Goldstone A, Eftim SE. | Water Res | 10.1016/j.watres.2018.12.058 | 2019 | | |
| Phylogeny | Development of new host-specific Bacteroides qPCRs for the identification of fecal contamination sources in water. | Gomez-Donate M, Casanovas-Massana A, Muniesa M, Blanch AR. | Microbiologyopen | 10.1002/mbo3.313 | 2016 | |
| Shiga toxin 2-encoding bacteriophages in human fecal samples from healthy individuals. | Martinez-Castillo A, Quiros P, Navarro F, Miro E, Muniesa M. | Appl Environ Microbiol | 10.1128/aem.01158-13 | 2013 | | |
| Extreme Heat Resistance of Food Borne Pathogens Campylobacter jejuni, Escherichia coli, and Salmonella typhimurium on Chicken Breast Fillet during Cooking. | de Jong AE, van Asselt ED, Zwietering MH, Nauta MJ, de Jonge R. | Int J Microbiol | 10.1155/2012/196841 | 2012 | | |
| Metabolism | Evolution of a self-inducible cytolethal distending toxin type V-encoding bacteriophage from Escherichia coli O157:H7 to Shigella sonnei. | Allue-Guardia A, Imamovic L, Muniesa M. | J Virol | 10.1128/jvi.02860-13 | 2013 | |
| Phage-mediated Shiga toxin 2 gene transfer in food and water. | Imamovic L, Jofre J, Schmidt H, Serra-Moreno R, Muniesa M. | Appl Environ Microbiol | 10.1128/aem.02273-08 | 2009 | | |
| Pathogenicity | Persistence of infectious Shiga toxin-encoding bacteriophages after disinfection treatments. | Allue-Guardia A, Martinez-Castillo A, Muniesa M. | Appl Environ Microbiol | 10.1128/aem.04006-13 | 2014 | |
| Enzymology | Surface plasmon resonance assay for real-time monitoring of somatic coliphages in wastewaters. | Garcia-Aljaro C, Munoz-Berbel X, Jenkins AT, Blanch AR, Munoz FX. | Appl Environ Microbiol | 10.1128/aem.02806-07 | 2008 | |
| Quantification of Shiga toxin-converting bacteriophages in wastewater and in fecal samples by real-time quantitative PCR. | Imamovic L, Balleste E, Jofre J, Muniesa M. | Appl Environ Microbiol | 10.1128/aem.00107-10 | 2010 | | |
| Phylogeny | New molecular quantitative PCR assay for detection of host-specific Bifidobacteriaceae suitable for microbial source tracking. | Gomez-Donate M, Balleste E, Muniesa M, Blanch AR. | Appl Environ Microbiol | 10.1128/aem.00895-12 | 2012 | |
| Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples. | Colomer-Lluch M, Jofre J, Muniesa M. | PLoS One | 10.1371/journal.pone.0017549 | 2011 | |
How to cite
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive134451.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain dataIsabel Schober, Julia Koblitz, Joaquim Sardà Carbasse, Christian Ebeling, Marvin Leon Schmidt, Adam Podstawka, Rohit Gupta, Vinodh Ilangovan, Javad Chamanara, Jörg Overmann, Lorenz Christian Reimer
Nucleic Acids Research; database issue 2025.
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