Escherichia coli CCUG 52543 is an aerobe, mesophilic prokaryote of the family Enterobacteriaceae.
aerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 59587 | positive | growth | 37 | mesophilic |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | + | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59587 | - | - | + | - | - | + | + | - | + | - | + | + | - | - | + | - | + | - | + | + | - | + | - | - | + | + | + | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 32868_B01 assembly for Escherichia coli NCTC13352 | contig | 562 | 30.53 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 86.70 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 62.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 86.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.78 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.95 | no |
| 125438 | aerobic | aerobicⓘ | no | 58.08 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 74.86 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Monitoring Multi-Drug Resistant Klebsiella pneumoniae in Kitagata Hot Spring, Southwestern Uganda: A Public Health Implication. | Hambali KU, Eilu E, Kumar S, Afolabi AO, Tijani NA, Faseun YO, Odoki M, Gechemba Mokaya C, Makeri D, Jakheng SPE, Sankarapandian V, Adeyemo RO, Adegboyega TT, Adebayo IA, Ntulume I, Akinola SA. | Infect Drug Resist | 10.2147/idr.s472998 | 2024 | |
| Antibiotic and Metal Resistance in Escherichia coli Isolated from Pig Slaughterhouses in the United Kingdom. | Yang H, Wei SH, Hobman JL, Dodd CER. | Antibiotics (Basel) | 10.3390/antibiotics9110746 | 2020 | ||
| Multidrug-Resistant ESBL-Producing E. coli in Clinical Samples from the UK. | Ibrahim DR, Dodd CER, Stekel DJ, Meshioye RT, Diggle M, Lister M, Hobman JL. | Antibiotics (Basel) | 10.3390/antibiotics12010169 | 2023 | ||
| Pathogenicity | Genetic characterization of TEM-type ESBL-associated antibacterial resistance in Enterobacteriaceae in a tertiary hospital in Ghana. | Oduro-Mensah D, Obeng-Nkrumah N, Bonney EY, Oduro-Mensah E, Twum-Danso K, Osei YD, Sackey ST. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-016-0144-2 | 2016 | |
| The molecular characterisation of Escherichia coli K1 isolated from neonatal nasogastric feeding tubes. | Alkeskas A, Ogrodzki P, Saad M, Masood N, Rhoma NR, Moore K, Farbos A, Paszkiewicz K, Forsythe S. | BMC Infect Dis | 10.1186/s12879-015-1210-7 | 2015 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #59587 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52543 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68374 | Automatically annotated from API ID32E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive154144.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data