Strain identifier

BacDive ID: 154144

Type strain: No

Species: Escherichia coli

NCBI tax ID(s): 562 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 9.3 (current version)

General

@ref: 59587

BacDive-ID: 154144

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Escherichia coli CCUG 52543 is an aerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

doi: 10.13145/bacdive154144.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 59587

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

type strain: no

Morphology

cell morphology

  • @ref: 125438
  • gram stain: negative
  • confidence: 99.75

Culture and growth conditions

culture temp

  • @ref: 59587
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
59587aerobe
125439obligate aerobe96.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol-builds acid from
6837462345L-rhamnose+builds acid from
6837427082trehalose+builds acid from
6837418333D-arabitol-builds acid from
6837417992sucrose-builds acid from
6837417634D-glucose+builds acid from
6837427897tryptophan+energy source
6837415792malonate-assimilation
6837418394palatinose-builds acid from
68374Potassium 5-ketogluconate+builds acid from
6837418024D-galacturonic acid+builds acid from
6837418403L-arabitol-builds acid from
6837416199urea-hydrolysis
6837429016arginine-hydrolysis
6837418257ornithine-degradation
6837417057cellobiose-builds acid from
6837417268myo-inositol-builds acid from
6837430849L-arabinose+builds acid from
6837415963ribitol-builds acid from
6837417306maltose+builds acid from
6837416899D-mannitol+builds acid from
6837425094lysine+degradation

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374beta-galactosidase+3.2.1.23
68374urease-3.5.1.5
68374ornithine decarboxylase-4.1.1.17
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase+3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase-3.5.3.6

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
59587--+--++-+-++--+-+-++-+--+++-----

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli NCTC13352GCA_900448645contigncbi562
66792Escherichia coli strain NCTC13352562.34184wgspatric562

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.75no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.776yes
125438spore-formingspore-formingAbility to form endo- or exosporesno87.948no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no58.082yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98yes
125438motile2+flagellatedAbility to perform flagellated movementyes74.856no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno86.7
125439BacteriaNetmotilityAbility to perform movementyes62.1
125439BacteriaNetgram_stainReaction to gram-stainingnegative86.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96.4

External links

@ref: 59587

culture collection no.: CCUG 52543, NCTC 13352

straininfo link

  • @ref: 107835
  • straininfo: 303522

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59587Curators of the CCUGhttps://www.ccug.se/strain?id=52543Culture Collection University of Gothenburg (CCUG) (CCUG 52543)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68374Automatically annotated from API ID32E
107835Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID303522.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG