Escherichia coli (DSM 13127, NCCB PC 0886, PC 0886)
Escherichia coli PC 0886 is a bacterium of the family Enterobacteriaceae.
genome sequence BacteriaName and taxonomic classification
| @ref 20215 |
Last LPSN update
2026-05-29 08:26:02 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
Culture and growth conditions
Culture medium
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4913 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive  | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
Culture temp
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 4913 | positive | growth | 37 |
Physiology and metabolism
Spore formation
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.161 |
Metabolite utilization
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
Metabolite production
Metabolite tests
Enzymes
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
API 20E
Interaction and safety
Risk assessment
Phages
| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Escherichia phage phiX174 (Escherichia virus phiX174) | DSM 13127 |
Sequence information
Genome sequences
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM4931181v1 assembly for Escherichia coli DSM 13127 | contig | GCA_049311815   | 562 | 56.75 | |
Genome browser: GCA_049311815
Literature
Literature 
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Filamentous bacteriophage M13 induces proinflammatory responses in intestinal epithelial cells. | Varadan AC, Grasis JA. | Infect Immun | 10.1128/iai.00618-24 | 2025 | | |
| Comparative evaluation of long-term preservation methods for morphologically distinct bacteriophages. | Huang W, Khan Mirzaei M, Deng L. | Microbiol Spectr | 10.1128/spectrum.01442-24 | 2025 | | |
| Photoinactivation of the bacteriophage PhiX174 by UVA radiation and visible light in SM buffer and DMEM-F12. | Sommerfeld F, Weyersberg L, Vatter P, Hessling M. | BMC Res Notes | 10.1186/s13104-023-06658-8 | 2024 | | |
| Biological Properties of Recently Described Wild Bramble Rubus oklejewiczii against the Species from Similar Niches. | Grabek-Lejko D, Wolanin M, Szpytma A, Pajda D, Milek M, Puchalski C. | Foods | 10.3390/foods13020337 | 2024 | | |
| UV radiation sensitivity of bacteriophage PhiX174 - A potential surrogate for SARS-CoV-2 in terms of radiation inactivation. | Weyersberg L, Sommerfeld F, Vatter P, Hessling M. | AIMS Microbiol | 10.3934/microbiol.2023023 | 2023 | | |
| A Novel Efficient L-Lysine Exporter Identified by Functional Metagenomics. | Malla S, van der Helm E, Darbani B, Wieschalka S, Forster J, Borodina I, Sommer MOA. | Front Microbiol | 10.3389/fmicb.2022.855736 | 2022 | | |
| The comparison of the antioxidant, antibacterial and antiviral potential of Polish fir honeydew and Manuka honeys. | Grabek-Lejko D, Milek M, Dzugan M. | Sci Rep | 10.1038/s41598-024-82429-0 | 2024 | | |
| Enzymology | Cold atmospheric plasma: a sustainable approach to inactivating viruses, bacteria, and protozoa with remediation of organic pollutants in river water and wastewater. | Hamza IA, El-Kalliny AS, Abd-Elmaksoud S, Marouf MA, Abdel-Wahed MS, El-Liethy MA, Hefny MM. | Environ Sci Pollut Res Int | 10.1007/s11356-023-30298-x | 2023 | |
| Enzymology | A rigorous assessment and comparison of enumeration methods for environmental viruses. | Kaletta J, Pickl C, Griebler C, Klingl A, Kurmayer R, Deng L. | Sci Rep | 10.1038/s41598-020-75490-y | 2020 | |
| Metabolism | Survival of the enveloped bacteriophage Phi6 (a surrogate for SARS-CoV-2) in evaporated saliva microdroplets deposited on glass surfaces. | Fedorenko A, Grinberg M, Orevi T, Kashtan N. | Sci Rep | 10.1038/s41598-020-79625-z | 2020 | |
| Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments. | Rasmussen TS, Mao X, Forster S, Larsen SB, Von Munchow A, Tranaes KD, Brunse A, Larsen F, Mejia JLC, Adamberg S, Hansen AK, Adamberg K, Hansen CHF, Nielsen DS. | Microbiome | 10.1186/s40168-024-01820-1 | 2024 | | |
| Removal of chemical and microbial water pollutants by cold plasma combined with Ag/TiO2-rGO nanoparticles. | Abdel-Wahed MS, Hefny MM, Abd-Elmaksoud S, El-Liethy MA, Kamel MA, El-Kalliny AS, Hamza IA. | Sci Rep | 10.1038/s41598-022-13444-2 | 2022 | | |
| Genetics | Newly Isolated Bacteriophages from the Podoviridae, Siphoviridae, and Myoviridae Families Have Variable Effects on Putative Novel Dickeya spp. | Alic S, Naglic T, Tusek-Znidaric M, Ravnikar M, Racki N, Peterka M, Dreo T. | Front Microbiol | 10.3389/fmicb.2017.01870 | 2017 | |
How to cite
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive4893.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain dataIsabel Schober, Julia Koblitz, Joaquim Sardà Carbasse, Christian Ebeling, Marvin Leon Schmidt, Adam Podstawka, Rohit Gupta, Vinodh Ilangovan, Javad Chamanara, Jörg Overmann, Lorenz Christian Reimer
Nucleic Acids Research; database issue 2025.
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