Escherichia coli P97 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 39421 | negative | rod-shaped |
| 39421 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 39421 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 39421 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | + | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 39421 | 17234 ChEBI | glucose | + | fermentation | |
| 39421 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | + | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 39421 | 17716 ChEBI | lactose | + | fermentation | |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 39421 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 39421 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 39421 | 17632 ChEBI | nitrate | + | reduction | |
| 39421 | 16301 ChEBI | nitrite | + | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 39421 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 39421 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 39421 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 39421 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 39421 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 39421 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 39421 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 39421 | ornithine decarboxylase | + | 4.1.1.17 | |
| 39421 | oxidase | - | ||
| 39421 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 39421 | tryptophan deaminase | - | ||
| 39421 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39421 | not determinedn.d. | + | - | + | + | + | + | - | - | - | + | + | + | + | + | + | + | - | + | + | - | - | + | - | - | - | - | - | + | + | + | + | + | - | - | + | - | - | - | - | - | - | - | - | + | - | - | + | - | + |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 39421 | 2 | Risk group (French classification) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Enterobacteria Phage SV76 Host Range and Genomic Characterization. | Carmody CM, Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0005 | 2022 | |
| Pathogenicity | Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library. | Farquharson EL, Nugen SR. | Phage (New Rochelle) | 10.1089/phage.2022.0008 | 2022 | |
| Metabolism | The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli. | Hogins J, Xuan Z, Zimmern PE, Reitzer L. | Microbiol Spectr | 10.1128/spectrum.02085-23 | 2023 | |
| Pathogenicity | Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms. | Teteneva NA, Mart'yanov SV, Esteban-Lopez M, Kahnt J, Glatter T, Netrusov AI, Plakunov VK, Sourjik V. | Appl Environ Microbiol | 10.1128/aem.01113-20 | 2020 | |
| Quorum Sensing and Metabolic State of the Host Control Lysogeny-Lysis Switch of Bacteriophage T1. | Laganenka L, Sander T, Lagonenko A, Chen Y, Link H, Sourjik V. | mBio | 10.1128/mbio.01884-19 | 2019 | ||
| Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli. | Wang YD, Zhao S, Hill CW. | J Bacteriol | 10.1128/jb.180.16.4102-4110.1998 | 1998 | ||
| Enzymology | Detection of diarrheagenic Escherichia coli by use of melting-curve analysis and real-time multiplex PCR. | Guion CE, Ochoa TJ, Walker CM, Barletta F, Cleary TG. | J Clin Microbiol | 10.1128/jcm.02341-07 | 2008 | |
| Reshuffling of Rhs components to create a new element. | Zhao S, Hill CW. | J Bacteriol | 10.1128/jb.177.5.1393-1398.1995 | 1995 | ||
| Correlation of Rhs elements with Escherichia coli population structure. | Hill CW, Feulner G, Brody MS, Zhao S, Sadosky AB, Sandt CH. | Genetics | 10.1093/genetics/141.1.15 | 1995 | ||
| Phylogeny | Rapid and simple determination of the Escherichia coli phylogenetic group. | Clermont O, Bonacorsi S, Bingen E. | Appl Environ Microbiol | 10.1128/aem.66.10.4555-4558.2000 | 2000 | |
| Representational difference analysis between Afa/Dr diffusely adhering Escherichia coli and nonpathogenic E. coli K-12. | Blanc-Potard AB, Tinsley C, Scaletsky I, Le Bouguenec C, Guignot J, Servin AL, Nassif X, Bernet-Camard MF. | Infect Immun | 10.1128/iai.70.10.5503-5511.2002 | 2002 | ||
| The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. | Ren CP, Beatson SA, Parkhill J, Pallen MJ. | J Bacteriol | 10.1128/jb.187.4.1430-1440.2005 | 2005 | ||
| Metabolism | Osmoregulatory systems of Escherichia coli: identification of betaine-carnitine-choline transporter family member BetU and distributions of betU and trkG among pathogenic and nonpathogenic isolates. | Ly A, Henderson J, Lu A, Culham DE, Wood JM. | J Bacteriol | 10.1128/jb.186.2.296-306.2004 | 2004 | |
| Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. | Boyd EF, Hartl DL. | J Bacteriol | 10.1128/jb.180.5.1159-1165.1998 | 1998 | ||
| Bacterial interspersed mosaic elements (BIMEs) are a major source of sequence polymorphism in Escherichia coli intergenic regions including specific associations with a new insertion sequence. | Bachellier S, Clement JM, Hofnung M, Gilson E. | Genetics | 10.1093/genetics/145.3.551 | 1997 | ||
| Detecting selective sweeps in naturally occurring Escherichia coli. | Guttman DS, Dykhuizen DE. | Genetics | 10.1093/genetics/138.4.993 | 1994 | ||
| Mosaic structure of plasmids from natural populations of Escherichia coli. | Boyd EF, Hill CW, Rich SM, Hartl DL. | Genetics | 10.1093/genetics/143.3.1091 | 1996 | ||
| Insertion sequences. | Mahillon J, Chandler M. | Microbiol Mol Biol Rev | 10.1128/mmbr.62.3.725-774.1998 | 1998 | ||
| Enzymology | Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. | Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T. | J Bacteriol | 10.1128/jb.183.12.3663-3679.2001 | 2001 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #39421 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105994 |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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