Escherichia coli (DSM 19683, CIP 106878, NCTC 13167)
BacDive ID
23925
Type strain
NCBI tax ID(s)
562
History
DSMZ <- NCTC; NCTC 13167 <- K. Mooijman, Nat. Inst. Public Health and Environ., Bilthoven, The Netherlands; WR1
CIP <- 2001, K. Mooijman, Nat. Inst. Public Health and Environ., Bilthoven, The Netherlands: strain WR1
CIP <- 2001, K. Mooijman, Nat. Inst. Public Health and Environ., Bilthoven, The Netherlands: strain WR1
Links
Escherichia coli DSM 19683 is a facultative anaerobe, Gram-negative, rod-shaped human pathogen of the family Enterobacteriaceae.
Gram-negative rod-shaped facultative anaerobe human pathogen genome sequence BacteriaName and taxonomic classification
| @ref 20215 |
|
Last LPSN update
2026-05-29 08:30:31 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
Culture and growth conditions
Culture medium
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 20555 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive  | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 20555 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 35169 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 118695 | CIP Medium 72 | Medium recipe at CIP |
Physiology and metabolism
Spore formation
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.661 |
Metabolite utilization
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 118695 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 118695 | 17234 ChEBI | glucose | + | fermentation | |
| 118695 | 17234 ChEBI | glucose | + | degradation | |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 118695 | 17716 ChEBI | lactose | + | fermentation | |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 118695 | 15792 ChEBI | malonate | - | assimilation | |
| 118695 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 118695 | 17632 ChEBI | nitrate | + | reduction | |
| 118695 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 118695 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
Antibiotic resistance
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 118695 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
Metabolite production
Metabolite tests
Enzymes
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118695 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118695 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 118695 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118695 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118695 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118695 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 118695 | oxidase | - | ||
| 118695 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 118695 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 118695 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
API 20E
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20555 | + | - | - | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
API zym
API biotype100
Sequence information
Genome sequences
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 43188_A01 assembly for Escherichia coli NCTC13167 | contig | GCA_900448075   | 562.34134  | 562 | 77.29 | |
Genome browser: GCA_900448075
Literature
Literature 
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
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| Hospital Production of Sterile 2% Propofol Nanoemulsion: Proof of Concept. | Cebe A, Dessane B, Gohier P, Bernadou JM, Venet A, Xuereb F, Crauste-Manciet S. | Pharmaceutics | 10.3390/pharmaceutics15030905 | 2023 | | |
| Production and characterization of exopolysaccharides from Pseudomonas aeruginosa AG01 with some medical potential applications. | Ghanaim AM, Mohamed HI, El-Ansary AE. | Microb Cell Fact | 10.1186/s12934-025-02730-z | 2025 | | |
| Bioconjugation of Serratiopeptidase with Titanium Oxide Nanoparticles: Improving Stability and Antibacterial Properties. | Melchor-Moncada JJ, Vasquez-Giraldo S, Zuluaga-Velez A, Orozco LM, Veloza LA, Sepulveda-Arias JC. | J Funct Biomater | 10.3390/jfb15100300 | 2024 | | |
| Electrochemical point-of-care devices for the diagnosis of sepsis. | Valera E, Kindratenko V, Jankelow AM, Heredia J, Kim AY, Cowell TW, Chen CL, White K, Han HS, Bashir R. | Curr Opin Electrochem | 10.1016/j.coelec.2023.101300 | 2023 | | |
| Variations in active proteases of Blastocystis sp. obtained from water and animal isolates from the Philippines. | Adao DEV, Rivera WL. | J Parasit Dis | 10.1007/s12639-022-01472-8 | 2022 | | |
| mRNA vaccines encoding fusion proteins of monkeypox virus antigens protect mice from vaccinia virus challenge. | Hou F, Zhang Y, Liu X, Murad YM, Xu J, Yu Z, Hua X, Song Y, Ding J, Huang H, Zhao R, Jia W, Yang X. | Nat Commun | 10.1038/s41467-023-41628-5 | 2023 | | |
| Navigating a Fine Balance: Point-Mutant Cheater Viruses Disrupt the Viral Replication Cycle. | Meir M, Kahn A, Farage C, Maoz Y, Harel N, Ben Zvi A, Segev S, Volkov M, Yahud R, Gophna U, Stern A. | Mol Biol Evol | 10.1093/molbev/msae258 | 2025 | | |
| Iodine-Loaded Calcium Titanate for Bone Repair with Sustainable Antibacterial Activity Prepared by Solution and Heat Treatment. | Yamaguchi S, Le PTM, Shintani SA, Takadama H, Ito M, Ferraris S, Spriano S. | Nanomaterials (Basel) | 10.3390/nano11092199 | 2021 | | |
| Diverse roles played by "Pseudomonas fluorescens complex" volatile compounds in their interaction with phytopathogenic microrganims, pests and plants. | Raio A. | World J Microbiol Biotechnol | 10.1007/s11274-023-03873-0 | 2024 | | |
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| Microbial Volatile Organic Compounds: An Alternative for Chemical Fertilizers in Sustainable Agriculture Development. | Chandrasekaran M, Paramasivan M, Sahayarayan JJ. | Microorganisms | 10.3390/microorganisms11010042 | 2022 | | |
| Structural insights into the complex of oncogenic KRas4BG12V and Rgl2, a RalA/B activator. | Tariq M, Ikeya T, Togashi N, Fairall L, Kamei S, Mayooramurugan S, Abbott LR, Hasan A, Bueno-Alejo C, Sukegawa S, Romartinez-Alonso B, Muro Campillo MA, Hudson AJ, Ito Y, Schwabe JW, Dominguez C, Tanaka K. | Life Sci Alliance | 10.26508/lsa.202302080 | 2024 | | |
| Genetics | DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling. | Junier I, Ghobadpour E, Espeli O, Everaers R. | Front Microbiol | 10.3389/fmicb.2023.1192831 | 2023 | |
| Sorting of Particles Using Inertial Focusing and Laminar Vortex Technology: A Review. | Volpe A, Gaudiuso C, Ancona A. | Micromachines (Basel) | 10.3390/mi10090594 | 2019 | | |
| Fungal laccases: production, function, and applications in food processing. | Brijwani K, Rigdon A, Vadlani PV. | Enzyme Res | 10.4061/2010/149748 | 2010 | | |
| Novel Pseudomonas sp. SCA7 Promotes Plant Growth in Two Plant Families and Induces Systemic Resistance in Arabidopsis thaliana. | Kuhl-Nagel T, Rodriguez PA, Gantner I, Chowdhury SP, Schwehn P, Rosenkranz M, Weber B, Schnitzler JP, Kublik S, Schloter M, Rothballer M, Falter-Braun P. | Front Microbiol | 10.3389/fmicb.2022.923515 | 2022 | | |
| Pathogenicity | Intra-subtype variation in enteroadhesion accounts for differences in epithelial barrier disruption and is associated with metronidazole resistance in Blastocystis subtype-7. | Wu Z, Mirza H, Tan KS. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0002885 | 2014 | |
| Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. | Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. | Nat Commun | 10.1038/s41467-021-21243-y | 2021 | | |
| Bacillus volatiles adversely affect the physiology and ultra-structure of Ralstonia solanacearum and induce systemic resistance in tobacco against bacterial wilt. | Tahir HA, Gu Q, Wu H, Niu Y, Huo R, Gao X. | Sci Rep | 10.1038/srep40481 | 2017 | | |
| Metabolism | Vaccinia virus WR53.5/F14.5 protein is a new component of intracellular mature virus and is important for calcium-independent cell adhesion and vaccinia virus virulence in mice. | Izmailyan R, Chang W. | J Virol | 10.1128/jvi.00816-08 | 2008 | |
| Small lipopeptides possess anti-biofilm capability comparable to daptomycin and vancomycin. | Mishra B, Lushnikova T, Wang G. | RSC Adv | 10.1039/c5ra07896b | 2015 | | |
| Gene repression by minimal lac loops in vivo. | Bond LM, Peters JP, Becker NA, Kahn JD, Maher LJ. | Nucleic Acids Res | 10.1093/nar/gkq755 | 2010 | | |
| Prediction of protein essentiality by the support vector machine with statistical tests. | Hor CY, Yang CB, Yang ZJ, Tseng CT. | Evol Bioinform Online | 10.4137/ebo.s11975 | 2013 | | |
| Pathogenicity | Conflicting requirements of Plasmodium falciparum dihydrofolate reductase mutations conferring resistance to pyrimethamine-WR99210 combination. | Japrung D, Leartsakulpanich U, Chusacultanachai S, Yuthavong Y. | Antimicrob Agents Chemother | 10.1128/aac.00577-07 | 2007 | |
| Enzymology | A Focused Screen Identifies Antifolates with Activity on Mycobacterium tuberculosis. | Kumar A, Guardia A, Colmenarejo G, Perez E, Gonzalez RR, Torres P, Torres P, Calvo D, Gomez RM, Ortega F, Jimenez E, Gabarro RC, Rullas J, Ballell L, Sherman DR. | ACS Infect Dis | 10.1021/acsinfecdis.5b00063 | 2015 | |
| Biochemical and genetic characterization of the DNA ligase encoded by Saccharomyces cerevisiae open reading frame YOR005c, a homolog of mammalian DNA ligase IV. | Ramos W, Liu G, Giroux CN, Tomkinson AE. | Nucleic Acids Res | 10.1093/nar/26.24.5676 | 1998 | | |
| Metabolism | Delivery of two-step transcription amplification exendin-4 plasmid system with arginine-grafted bioreducible polymer in type 2 diabetes animal model. | Kim PH, Lee M, Kim SW. | J Control Release | 10.1016/j.jconrel.2012.06.010 | 2012 | |
| A synthetic three-color scaffold for monitoring genetic regulation and noise. | Cox RS, Dunlop MJ, Elowitz MB. | J Biol Eng | 10.1186/1754-1611-4-10 | 2010 | | |
| Wars between microbes on roots and fruits. | Lugtenberg B, Rozen DE, Kamilova F. | F1000Res | 10.12688/f1000research.10696.1 | 2017 | | |
| Metabolism | Multifactorial determinants of protein expression in prokaryotic open reading frames. | Allert M, Cox JC, Hellinga HW. | J Mol Biol | 10.1016/j.jmb.2010.08.010 | 2010 | |
| Metabolism | Centromeric nucleosomes induce positive DNA supercoils. | Furuyama T, Henikoff S. | Cell | 10.1016/j.cell.2009.04.049 | 2009 | |
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| Metabolism | Biological and structural basis for Aha1 regulation of Hsp90 ATPase activity in maintaining proteostasis in the human disease cystic fibrosis. | Koulov AV, LaPointe P, Lu B, Razvi A, Coppinger J, Dong MQ, Matteson J, Laister R, Arrowsmith C, Yates JR, Balch WE. | Mol Biol Cell | 10.1091/mbc.e09-12-1017 | 2010 | |
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| CHARACTERISTICS OF A HIGH FREQUENCY OF RECOMBINATION (HFR) STRAIN OF SALMONELLA TYPHOSA COMPATIBLE WITH SALMONELLA, SHIGELLA, AND ESCHERICHIA SPECIES. | Baron LS, Carey WF, Spilman WM. | Proc Natl Acad Sci U S A | 10.1073/pnas.45.12.1752 | 1959 | | |
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How to cite
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive23925.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain dataIsabel Schober, Julia Koblitz, Joaquim Sardà Carbasse, Christian Ebeling, Marvin Leon Schmidt, Adam Podstawka, Rohit Gupta, Vinodh Ilangovan, Javad Chamanara, Jörg Overmann, Lorenz Christian Reimer
Nucleic Acids Research; database issue 2025.
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