Escherichia coli CCUG 27 is a bacterium of the family Enterobacteriaceae.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | + | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | + | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | + | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44098 | + | - | + | - | - | + | + | - | + | - | + | + | - | - | + | - | + | - | + | + | - | + | - | - | + | + | + | - | - | + | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 38502_E01 assembly for Escherichia coli NCTC9006 | contig | 562 | 76.9 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 70.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 75.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 87.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.12 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.93 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | aerobic | aerobicⓘ | no | 67.01 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 76.91 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Deficiency of HMGN2 enhances antibacterial activity of macrophages by promoting H3 histone modification-mediated CD14/iNOS expression. | Yang Z, Zhang X, Liu C, Huang N, Teng Y, Miao J. | Front Immunol | 10.3389/fimmu.2025.1621440 | 2025 | ||
| Epithelial LIF signaling limits apoptosis and lung injury during bacterial pneumonia. | Na E, Allen E, Baird LA, Odom CV, Korkmaz FT, Shenoy AT, Matschulat AM, Jones MR, Kotton DN, Mizgerd JP, Varelas X, Traber KE, Quinton LJ. | Am J Physiol Lung Cell Mol Physiol | 10.1152/ajplung.00325.2021 | 2022 | ||
| Neutrophil Extracellular Traps as an Exacerbating Factor in Bacterial Pneumonia. | Sanders NL, Martin IMC, Sharma A, Jones MR, Quinton LJ, Bosmann M, Mizgerd JP. | Infect Immun | 10.1128/iai.00491-21 | 2022 | ||
| Metabolism | Liver-Dependent Lung Remodeling during Systemic Inflammation Shapes Responses to Secondary Infection. | Odom CV, Kim Y, Burgess CL, Baird LA, Korkmaz FT, Na E, Shenoy AT, Arafa EI, Lam TT, Jones MR, Mizgerd JP, Traber KE, Quinton LJ. | J Immunol | 10.4049/jimmunol.2100254 | 2021 | |
| Roles of interleukin-11 during acute bacterial pneumonia. | Traber KE, Dimbo EL, Symer EM, Korkmaz FT, Jones MR, Mizgerd JP, Quinton LJ. | PLoS One | 10.1371/journal.pone.0221029 | 2019 | ||
| Pathogenicity | Lectin-like oxidized low-density lipoprotein receptor 1 attenuates pneumonia-induced lung injury. | Korkmaz FT, Shenoy AT, Symer EM, Baird LA, Odom CV, Arafa EI, Dimbo EL, Na E, Molina-Arocho W, Brudner M, Standiford TJ, Mehta JL, Sawamura T, Jones MR, Mizgerd JP, Traber KE, Quinton LJ. | JCI Insight | 10.1172/jci.insight.149955 | 2022 | |
| Enzymology | Clinically relevant model of pneumococcal pneumonia, ARDS, and nonpulmonary organ dysfunction in mice. | Gotts JE, Bernard O, Chun L, Croze RH, Ross JT, Nesseler N, Wu X, Abbott J, Fang X, Calfee CS, Matthay MA. | Am J Physiol Lung Cell Mol Physiol | 10.1152/ajplung.00132.2019 | 2019 | |
| Enzymology | Aspirin-triggered resolvin D1 is produced during self-resolving gram-negative bacterial pneumonia and regulates host immune responses for the resolution of lung inflammation. | Abdulnour RE, Sham HP, Douda DN, Colas RA, Dalli J, Bai Y, Ai X, Serhan CN, Levy BD. | Mucosal Immunol | 10.1038/mi.2015.129 | 2016 | |
| Metabolism | Induction of STAT3-Dependent CXCL5 Expression and Neutrophil Recruitment by Oncostatin-M during Pneumonia. | Traber KE, Hilliard KL, Allen E, Wasserman GA, Yamamoto K, Jones MR, Mizgerd JP, Quinton LJ. | Am J Respir Cell Mol Biol | 10.1165/rcmb.2014-0342oc | 2015 | |
| Activation of Hepatic STAT3 Maintains Pulmonary Defense during Endotoxemia. | Hilliard KL, Allen E, Traber KE, Kim Y, Wasserman GA, Jones MR, Mizgerd JP, Quinton LJ. | Infect Immun | 10.1128/iai.00464-15 | 2015 | ||
| Metabolism | Leukemia inhibitory factor signaling is required for lung protection during pneumonia. | Quinton LJ, Mizgerd JP, Hilliard KL, Jones MR, Kwon CY, Allen E. | J Immunol | 10.4049/jimmunol.1200256 | 2012 | |
| Metabolism | Mechanisms of the hepatic acute-phase response during bacterial pneumonia. | Quinton LJ, Jones MR, Robson BE, Mizgerd JP. | Infect Immun | 10.1128/iai.01300-08 | 2009 | |
| Metabolism | Myeloid ZFP36L1 does not regulate inflammation or host defense in mouse models of acute bacterial infection. | Hyatt LD, Wasserman GA, Rah YJ, Matsuura KY, Coleman FT, Hilliard KL, Pepper-Cunningham ZA, Ieong M, Stumpo DJ, Blackshear PJ, Quinton LJ, Mizgerd JP, Jones MR. | PLoS One | 10.1371/journal.pone.0109072 | 2014 | |
| Metabolism | Roles of STAT3 in protein secretion pathways during the acute-phase response. | Ahyi AN, Quinton LJ, Jones MR, Ferrari JD, Pepper-Cunningham ZA, Mella JR, Remick DG, Mizgerd JP. | Infect Immun | 10.1128/iai.01332-12 | 2013 | |
| The anti-inflammatory and proresolving mediator resolvin E1 protects mice from bacterial pneumonia and acute lung injury. | Seki H, Fukunaga K, Arita M, Arai H, Nakanishi H, Taguchi R, Miyasho T, Takamiya R, Asano K, Ishizaka A, Takeda J, Levy BD. | J Immunol | 10.4049/jimmunol.0901809 | 2010 | ||
| Use of the flagellar H7 gene as a target in multiplex PCR assays and improved specificity in identification of enterohemorrhagic Escherichia coli strains. | Gannon VP, D'Souza S, Graham T, King RK, Rahn K, Read S. | J Clin Microbiol | 10.1128/jcm.35.3.656-662.1997 | 1997 | ||
| Monoclonal antibodies show Listeria monocytogenes in necropsy tissue samples. | McLauchlin J, Black A, Green HT, Nash JQ, Taylor AG. | J Clin Pathol | 10.1136/jcp.41.9.983 | 1988 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #44098 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68374 | Automatically annotated from API ID32E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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