Escherichia coli PTC E028 is a human pathogen that was isolated from chicken.
human pathogen genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | negative | 99.75 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 64263 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 64263 | positive | growth | 37 |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 64263 | chicken | Bönen | Germany | DEU | Europe |
| @ref | Pathogenicity human | Pathogenicity animal | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|---|
| 64263 | 2 | Risk group (German classification) |
| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Escherichia phage vB_EcoM-G28 (Escherichia virus G28) | DSM 103246 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM205876v1 assembly for Escherichia coli DSM 103246 | complete | 562 | 98.94 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.75 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.72 | no |
| 125438 | aerobic | aerobicⓘ | no | 67.33 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.05 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 78.23 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli. | Landor LAI, Tjendra J, Erstad K, Krabberod AK, Topper JP, Vage S. | Environ Microbiol Rep | 10.1111/1758-2229.70046 | 2024 | ||
| Genome Sequence of Escherichia coli E28, a Multidrug-Resistant Strain Isolated from a Chicken Carcass, and Its Spontaneously Inducible Prophage. | Schmidt I, Riedel T, Schober I, Bunk B, Sproer C, Bierbrodt A, Lehnherr H, Wittmann J. | Genome Announc | 10.1128/genomea.00348-17 | 2017 | ||
| Putrescine Detected in Strains of Staphylococcus aureus. | Seravalli J, Portugal F. | Pathogens | 10.3390/pathogens12070881 | 2023 | ||
| Genetics | Comparative Genomics of Escherichia coli Sequence Type 219 Clones From the Same Patient: Evolution of the IncI1 blaCMY-Carrying Plasmid in Vivo. | Kao CY, Chen JW, Liu TL, Yan JJ, Wu JJ. | Front Microbiol | 10.3389/fmicb.2018.01518 | 2018 | |
| Photo-Methionine, Azidohomoalanine and Homopropargylglycine Are Incorporated into Newly Synthesized Proteins at Different Rates and Differentially Affect the Growth and Protein Expression Levels of Auxotrophic and Prototrophic E. coli in Minimal Medium. | Jecmen T, Tuzhilkin R, Sulc M. | Int J Mol Sci | 10.3390/ijms241411779 | 2023 | ||
| Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence. | Pourhasanzade F, Iyer S, Tjendra J, Landor L, Vage S. | PLoS Comput Biol | 10.1371/journal.pcbi.1010228 | 2022 | ||
| Metabolism | Systems Biology and Pangenome of Salmonella O-Antigens. | Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO. | mBio | 10.1128/mbio.01247-19 | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #64263 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103246 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive157694.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data