Strain identifier
BacDive ID: 157694
Type strain: 
Species: Escherichia coli
Strain Designation: PTC E028
Strain history: <- H. Lehnherr
NCBI tax ID(s): 562 (species)
General
@ref: 64263
BacDive-ID: 157694
DSM-Number: 103246
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Escherichia coli PTC E028 is a mesophilic human pathogen that was isolated from chicken.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 64263
- history: <- H. Lehnherr
doi: 10.13145/bacdive157694.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 64263
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: PTC E028
type strain: no
Culture and growth conditions
culture medium
- @ref: 64263
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 64263
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64263
- sample type: chicken
- geographic location: Bönen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Birds
- Cat3: #Chicken
Safety information
risk assessment
- @ref: 64263
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Escherichia coli DSM 103246 | GCA_002058765 | complete | ncbi | 562 |
| 66792 | Escherichia coli strain DSM 103246 | 562.16330 | complete | patric | 562 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 58.367 | no |
| gram-positive | no | 98.361 | no |
| anaerobic | no | 94.719 | no |
| aerobic | yes | 82.427 | no |
| halophile | no | 89.647 | no |
| spore-forming | no | 94.341 | no |
| glucose-util | yes | 94.38 | no |
| thermophile | no | 99.339 | yes |
| glucose-ferment | yes | 92.604 | no |
| motile | yes | 88.931 | no |
External links
@ref: 64263
culture collection no.: DSM 103246
straininfo link
- @ref: 110562
- straininfo: 406408
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64263 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103246 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103246) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110562 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406408.1 |