Escherichia coli K12 W3110 is a mesophilic prokaryote of the family Enterobacteriaceae.
mesophilic
SI-ID 44754
| @ref 20215 |
Last LPSN update
2026-02-09 11:18:45 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Escherichia |
| Species Escherichia coli |
| Full scientific name Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2358 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive  | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 2358 | positive | growth | 37 | mesophilic |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2358 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 2358 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 2358 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
Phages| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Escherichia phage vB_EcoS-RTP (Escherichia virus Rtp) | DSM 5911 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Detection, isolation and characterization of phage-host complexes using BONCAT and click chemistry. | Hellwig P, Dittrich A, Heyer R, Reichl U, Benndorf D. | Front Microbiol | 10.3389/fmicb.2024.1434301 | 2024 | |
| Genetics | Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins. | Hellwig P, Kautzner D, Heyer R, Dittrich A, Wibberg D, Busche T, Winkler A, Reichl U, Benndorf D. | ISME Commun | 10.1093/ismeco/ycae153 | 2024 | |
| Proteome | Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS1) and in Silico Peptide Mass Libraries. | Lasch P, Schneider A, Blumenscheit C, Doellinger J. | Mol Cell Proteomics | 10.1074/mcp.tir120.002061 | 2020 | |
| Pathogenicity | Compensatory intestinal immunoglobulin response after vancomycin treatment in humans. | Scheithauer TPM, Bakker GJ, Winkelmeijer M, Davids M, Nieuwdorp M, van Raalte DH, Herrema H. | Gut Microbes | 10.1080/19490976.2021.1875109 | 2021 | |
| BACTOX, a rapid bioassay that uses protozoa to assess the toxicity of bacteria. | Schlimme W, Marchiani M, Hanselmann K, Jenni B. | Appl Environ Microbiol | 10.1128/aem.65.6.2754-2757.1999 | 1999 | | |
| Metabolism | A long-term cultivation of an anaerobic methane-oxidizing microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor. | Aoki M, Ehara M, Saito Y, Yoshioka H, Miyazaki M, Saito Y, Miyashita A, Kawakami S, Yamaguchi T, Ohashi A, Nunoura T, Takai K, Imachi H. | PLoS One | 10.1371/journal.pone.0105356 | 2014 | |
| Metabolism | Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations. | Lemuth K, Hardiman T, Winter S, Pfeiffer D, Keller MA, Lange S, Reuss M, Schmid RD, Siemann-Herzberg M. | Appl Environ Microbiol | 10.1128/aem.01327-08 | 2008 | |
| Metabolism | One pot synthesis of GDP-mannose by a multi-enzyme cascade for enzymatic assembly of lipid-linked oligosaccharides. | Rexer TFT, Schildbach A, Klapproth J, Schierhorn A, Mahour R, Pietzsch M, Rapp E, Reichl U. | Biotechnol Bioeng | 10.1002/bit.26454 | 2018 | |
| Preventive Activity of an Arginine-Based Surfactant on the Formation of Mixed Biofilms of Fluconazole-Resistant Candida albicans and Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli on Central Venous Catheters. | Perez L, da Silva CR, do Amaral Valente Sa LG, Neto JBA, Cabral VPF, Rodrigues DS, Moreira LEA, Silveira MJCB, Ferreira TL, da Silva AR, Cavalcanti BC, Ricardo NMPS, Rodrigues FAM, Junior HVN. | Antibiotics (Basel) | 10.3390/antibiotics14030227 | 2025 | | |
| Mapping protein-metabolite interactions in E. coli by integrating chromatographic techniques and co-fractionation mass spectrometry. | Wagner M, Kang J, Mercado C, Thirumlaikumar VP, Gorka M, Zillmer H, Guo J, Minen RI, Plecki CF, Dehesh K, Schroeder FC, Walther D, Skirycz A. | iScience | 10.1016/j.isci.2025.112611 | 2025 | | |
| A quantitative prevalence of Escherichia coliO157 in different food samples using real-time qPCR method. | Pakbin B, Bruck WM, Bruck TB, Allahyari S, Ashrafi Tamai I. | Food Sci Nutr | 10.1002/fsn3.3055 | 2023 | | |
| A novel broad-spectrum antibacterial and anti-malarial Anopheles gambiae Cecropin promotes microbial clearance during pupation. | Barreto C, Cardoso-Jaime V, Dimopoulos G. | PLoS Pathog | 10.1371/journal.ppat.1012652 | 2024 | | |
| Point-of-Care Lateral Flow Detection of Viable Escherichia coli O157:H7 Using an Improved Propidium Monoazide-Recombinase Polymerase Amplification Method. | Rani A, Dike CC, Mantri N, Ball A. | Foods | 10.3390/foods11203207 | 2022 | | |
| Pathogenicity | Adhesive Antimicrobial Peptides Containing 3,4-Dihydroxy-L-Phenylalanine Residues for Direct One-Step Surface Coating. | Hwang YE, Im S, Kim H, Sohn JH, Cho BK, Cho JH, Sung BH, Kim SC. | Int J Mol Sci | 10.3390/ijms222111915 | 2021 | |
| An ultrasensitive nanofiber-based assay for enzymatic hydrolysis and deep-sea microbial degradation of cellulose. | Tsudome M, Tachioka M, Miyazaki M, Uchimura K, Tsuda M, Takaki Y, Deguchi S. | iScience | 10.1016/j.isci.2022.104732 | 2022 | | |
| Semi-Biosynthetic Production of Surface-Binding Adhesive Antimicrobial Peptides Using Intein-Mediated Protein Ligation. | Hwang YE, Im S, Cho JH, Lee W, Cho BK, Sung BH, Kim SC. | Int J Mol Sci | 10.3390/ijms232315202 | 2022 | | |
| Fractionation of the Caspian sand goby epidermal exudates using membrane ultrafiltration and reversed-phase chromatography: an investigation on bioactivities. | Akhavan-Bahabadi M, Paknejad H, Hedayati A, Habibi-Rezaei M. | Sci Rep | 10.1038/s41598-024-52126-z | 2024 | | |
| Metabolism | Improving L-serine formation by Escherichia coli by reduced uptake of produced L-serine. | Wang C, Wu J, Shi B, Shi J, Zhao Z. | Microb Cell Fact | 10.1186/s12934-020-01323-2 | 2020 | |
| Peptidoglycan recognition protein PGRP-5 is involved in immune defence and neuro-behavioral disorders in zebrafish embryos. | Li X, Xiong G, Luo M, Mao S, Zhang R, Meng Z, Li J, Liao X. | PLoS One | 10.1371/journal.pone.0315714 | 2025 | | |
| Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples. | Pacifico C, Hilbert M, Sofka D, Dinhopl N, Pap IJ, Aspock C, Carrico JA, Hilbert F. | Front Microbiol | 10.3389/fmicb.2019.02484 | 2019 | | |
| Metabolism | Engineering the Outer Membrane Could Facilitate Better Bacterial Performance and Effectively Enhance Poly-3-Hydroxybutyrate Accumulation. | Wang J, Ma W, Fang Y, Zhang H, Liang H, Liu H, Wang T, Chen S, Ji J, Wang X. | Appl Environ Microbiol | 10.1128/aem.01389-21 | 2021 | |
| Numerical Study of Bacteria Containing Droplets Aerosolized From Hot Surfaces. | Mirskaya E, Maksimenko V, Zagaynov V, Agranovski I. | Sci Rep | 10.1038/s41598-020-66081-y | 2020 | | |
| Evaluation and comparison of recombinase polymerase amplification coupled with lateral-flow bioassay for Escherichia coli O157:H7 detection using diifeerent genes. | Rani A, Ravindran VB, Surapaneni A, Shahsavari E, Haleyur N, Mantri N, Ball AS. | Sci Rep | 10.1038/s41598-021-81312-6 | 2021 | | |
| Potential Application of Protamine for Antimicrobial Biomaterials in Bone Tissue Engineering. | Honda M, Matsumoto M, Aizawa M. | Int J Mol Sci | 10.3390/ijms21124368 | 2020 | | |
| Did aculeate silk evolve as an antifouling material? | Sutherland TD, Sriskantha A, Rapson TD, Kaehler BD, Huttley GA. | PLoS One | 10.1371/journal.pone.0203948 | 2018 | | |
| Metabolism | Identification of Quinone Degradation as a Triggering Event for Intense Pulsed Light-Elicited Metabolic Changes in Escherichia coli by Metabolomic Fingerprinting. | Mao Q, Liu J, Wiertzema JR, Chen D, Chen P, Baumler DJ, Ruan R, Chen C. | Metabolites | 10.3390/metabo11020102 | 2021 | |
| Metabolism | Comparison of Escherichia coli and anaerobic consortia derived from compost as anodic biocatalysts in a glycerol-oxidizing microbial fuel cell. | Reiche A, Kirkwood KM. | Bioresour Technol | 10.1016/j.biortech.2012.07.005 | 2012 | |
| Combining ultraviolet light and mild temperatures for the inactivation of Escherichia coli in orange juice | Gayan E, Serrano MJ, Monfort S, Alvarez I, Condon S. | Journal of food engineering. | 10.1016/j.jfoodeng.2012.07.018 | 2012 | | |
| Characterization of Bacteria and Inducible Phages in an Intensive Care Unit. | Pacifico C, Hilbert M, Sofka D, Dinhopl N, Pap IJ, Aspock C, Hilbert F. | J Clin Med | 10.3390/jcm8091433 | 2019 | | |
| Biocidal Agents Used for Disinfection Can Enhance Antibiotic Resistance in Gram-Negative Species. | Kampf G. | Antibiotics (Basel) | 10.3390/antibiotics7040110 | 2018 | | |
| Epigallocatechin Gallate-Mediated Cell Death Is Triggered by Accumulation of Reactive Oxygen Species Induced via the Cpx Two-Component System in Escherichia coli. | Nie T, Zhang C, Huang A, Li P. | Front Microbiol | 10.3389/fmicb.2018.00246 | 2018 | | |
| Structural characterization of recombinant streptokinase following recovery from inclusion bodies using different chemical solubilization treatments. | Babaei Sheli K, Ghorbani M, Hekmat A, Soltanian B, Mohammadian A, Jalalirad R. | Biotechnol Rep (Amst) | 10.1016/j.btre.2018.e00259 | 2018 | | |
| Metabolism | Comparison of engineered Escherichia coli AF1000 and BL21 strains for (R)-3-hydroxybutyrate production in fed-batch cultivation. | Perez-Zabaleta M, Guevara-Martinez M, Gustavsson M, Quillaguaman J, Larsson G, van Maris AJA. | Appl Microbiol Biotechnol | 10.1007/s00253-019-09876-y | 2019 | |
| Enzymatic properties and inhibition tolerance analysis of key enzymes in beta-phenylethanol anabolic pathway of Saccharomyces cerevisiae HJ. | Yang Q, Liu S, Zhao Y, Han X, Chang R, Mao J. | Synth Syst Biotechnol | 10.1016/j.synbio.2023.11.006 | 2023 | | |
| Quaternary Ammonium Compounds (QACs) and Ionic Liquids (ILs) as Biocides: From Simple Antiseptics to Tunable Antimicrobials. | Vereshchagin AN, Frolov NA, Egorova KS, Seitkalieva MM, Ananikov VP. | Int J Mol Sci | 10.3390/ijms22136793 | 2021 | | |
| Modification of Honeybee Silk by the Addition of Antimicrobial Agents. | Trueman HE, Sriskantha A, Qu Y, Rapson TD, Sutherland TD. | ACS Omega | 10.1021/acsomega.7b00694 | 2017 | | |
| An integrated electrolysis - electrospray - ionization antimicrobial platform using Engineered Water Nanostructures (EWNS) for food safety applications. | Vaze N, Jiang Y, Mena L, Zhang Y, Bello D, Leonard SS, Morris AM, Eleftheriadou M, Pyrgiotakis G, Demokritou P. | Food Control | 10.1016/j.foodcont.2017.09.034 | 2018 | | |
| Enzymology | One-Step Purification of Microbially Produced Hydrophobic Terpenes via Process Chromatography. | Grozdev L, Kaiser J, Berensmeier S. | Front Bioeng Biotechnol | 10.3389/fbioe.2019.00185 | 2019 | |
| Synthetic redesign of Escherichia coli for cadaverine production from galactose. | Kwak DH, Lim HG, Yang J, Seo SW, Jung GY. | Biotechnol Biofuels | 10.1186/s13068-017-0707-2 | 2017 | | |
| Influence of Glucose Availability and CRP Acetylation on the Genome-Wide Transcriptional Response of Escherichia coli: Assessment by an Optimized Factorial Microarray Analysis. | Guebel DV, Torres NV. | Front Microbiol | 10.3389/fmicb.2018.00941 | 2018 | | |
| Extracellular expression of glutamate decarboxylase B in Escherichia coli to improve gamma-aminobutyric acid production. | Zhao A, Hu X, Li Y, Chen C, Wang X. | AMB Express | 10.1186/s13568-016-0231-y | 2016 | | |
| Oral Neutrophils Characterized: Chemotactic, Phagocytic, and Neutrophil Extracellular Trap (NET) Formation Properties. | Moonen CGJ, Hirschfeld J, Cheng L, Chapple ILC, Loos BG, Nicu EA. | Front Immunol | 10.3389/fimmu.2019.00635 | 2019 | | |
| Engineering of a microbial coculture of Escherichia coli strains for the biosynthesis of resveratrol. | Camacho-Zaragoza JM, Hernandez-Chavez G, Moreno-Avitia F, Ramirez-Iniguez R, Martinez A, Bolivar F, Gosset G. | Microb Cell Fact | 10.1186/s12934-016-0562-z | 2016 | | |
| Genetics | The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules. | Root-Bernstein R, Root-Bernstein M. | Int J Mol Sci | 10.3390/ijms20010140 | 2019 | |
| Pathogenicity | Display of multimeric antimicrobial peptides on the Escherichia coli cell surface and its application as whole-cell antibiotics. | Shin JR, Lim KJ, Kim DJ, Cho JH, Kim SC. | PLoS One | 10.1371/journal.pone.0058997 | 2013 | |
| Metabolism | Construction of an Escherichia coli K-12 mutant for homoethanologenic fermentation of glucose or xylose without foreign genes. | Kim Y, Ingram LO, Shanmugam KT. | Appl Environ Microbiol | 10.1128/aem.02456-06 | 2007 | |
| Metabolism | Metabolic flux control at the pyruvate node in an anaerobic Escherichia coli strain with an active pyruvate dehydrogenase. | Wang Q, Ou MS, Kim Y, Ingram LO, Shanmugam KT. | Appl Environ Microbiol | 10.1128/aem.02545-09 | 2010 | |
| Long-adapter single-strand oligonucleotide probes for the massively multiplexed cloning of kilobase genome regions. | Tosi L, Sridhara V, Yang Y, Guan D, Shpilker P, Segata N, Larman HB, Parekkadan B. | Nat Biomed Eng | 10.1038/s41551-017-0092 | 2017 | | |
| Metabolism | Anaerobic obligatory xylitol production in Escherichia coli strains devoid of native fermentation pathways. | Akinterinwa O, Cirino PC. | Appl Environ Microbiol | 10.1128/aem.01890-10 | 2011 | |
| Pathogenicity | A novel high-throughput cell-based assay aimed at identifying inhibitors of DNA metabolism in bacteria. | Fan J, de Jonge BL, MacCormack K, Sriram S, McLaughlin RE, Plant H, Preston M, Fleming PR, Albert R, Foulk M, Mills SD. | Antimicrob Agents Chemother | 10.1128/aac.03475-14 | 2014 | |
| Massively parallel DNA target capture using long adapter single stranded oligonucleotide (LASSO) probes assembled through a novel DNA recombinase mediated methodology. | Tosi L, Chkaiban L, Larman BH, Rosenfeld JA, Parekkadan B. | Biotechnol J | 10.1002/biot.202100240 | 2022 | | |
| Metabolism | Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode. | Borja GM, Meza Mora E, Barron B, Gosset G, Ramirez OT, Lara AR. | Microb Cell Fact | 10.1186/1475-2859-11-132 | 2012 | |
| Metabolism | Bacterial Cysteine-Inducible Cysteine Resistance Systems. | Takumi K, Nonaka G. | J Bacteriol | 10.1128/jb.01039-15 | 2016 | |
| Pathogenicity | The antimicrobial activity of the appetite peptide hormone ghrelin. | Min C, Ohta K, Kajiya M, Zhu T, Sharma K, Shin J, Mawardi H, Howait M, Hirschfeld J, Bahammam L, Ichimonji I, Ganta S, Amiji M, Kawai T. | Peptides | 10.1016/j.peptides.2012.05.006 | 2012 | |
| Metabolism | Optimization of a nanotechnology based antimicrobial platform for food safety applications using Engineered Water Nanostructures (EWNS). | Pyrgiotakis G, Vedantam P, Cirenza C, McDevitt J, Eleftheriadou M, Leonard SS, Demokritou P. | Sci Rep | 10.1038/srep21073 | 2016 | |
| Secretion of recombinant proteins from E. coli. | Kleiner-Grote GRM, Risse JM, Friehs K. | Eng Life Sci | 10.1002/elsc.201700200 | 2018 | | |
| Reduced graphene oxide anodes for potential application in algae biophotovoltaic platforms. | Ng FL, Jaafar MM, Phang SM, Chan Z, Salleh NA, Azmi SZ, Yunus K, Fisher AC, Periasamy V. | Sci Rep | 10.1038/srep07562 | 2014 | | |
| Metabolism | Production of cinnamic and p-hydroxycinnamic acid from sugar mixtures with engineered Escherichia coli. | Vargas-Tah A, Martinez LM, Hernandez-Chavez G, Rocha M, Martinez A, Bolivar F, Gosset G. | Microb Cell Fact | 10.1186/s12934-014-0185-1 | 2015 | |
| Metabolism | Photocatalytic disinfection using titanium dioxide: spectrum and mechanism of antimicrobial activity. | Foster HA, Ditta IB, Varghese S, Steele A. | Appl Microbiol Biotechnol | 10.1007/s00253-011-3213-7 | 2011 | |
| Metabolism | Pyruvate formate lyase and acetate kinase are essential for anaerobic growth of Escherichia coli on xylose. | Hasona A, Kim Y, Healy FG, Ingram LO, Shanmugam KT. | J Bacteriol | 10.1128/jb.186.22.7593-7600.2004 | 2004 | |
| Evaluation of a lipopeptide biosurfactant from Bacillus natto TK-1 as a potential source of anti-adhesive, antimicrobial and antitumor activities. | Cao XH, Liao ZY, Wang CL, Yang WY, Lu MF. | Braz J Microbiol | 10.1590/s1517-838220090002000030 | 2009 | | |
| Metabolism | Engineering Escherichia coli for efficient conversion of glucose to pyruvate. | Causey TB, Shanmugam KT, Yomano LP, Ingram LO. | Proc Natl Acad Sci U S A | 10.1073/pnas.0308171100 | 2004 | |
| Metabolism | Genetic changes to optimize carbon partitioning between ethanol and biosynthesis in ethanologenic Escherichia coli. | Underwood SA, Zhou S, Causey TB, Yomano LP, Shanmugam KT, Ingram LO. | Appl Environ Microbiol | 10.1128/aem.68.12.6263-6272.2002 | 2002 | |
| Metabolism | Enhanced trehalose production improves growth of Escherichia coli under osmotic stress. | Purvis JE, Yomano LP, Ingram LO. | Appl Environ Microbiol | 10.1128/aem.71.7.3761-3769.2005 | 2005 | |
| Metabolism | In vitro validation of acetyltransferase activity of GlmU as an antibacterial target in Haemophilus influenzae. | Buurman ET, Andrews B, Gao N, Hu J, Keating TA, Lahiri S, Otterbein LR, Patten AD, Stokes SS, Shapiro AB. | J Biol Chem | 10.1074/jbc.m111.274068 | 2011 | |
| Sample processing for DNA chip array-based analysis of enterohemorrhagic Escherichia coli (EHEC). | Basselet P, Wegrzyn G, Enfors SO, Gabig-Ciminska M. | Microb Cell Fact | 10.1186/1475-2859-7-29 | 2008 | | |
| Metabolism | Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains. | Yoshida A, Nishimura T, Kawaguchi H, Inui M, Yukawa H. | Appl Environ Microbiol | 10.1128/aem.71.11.6762-6768.2005 | 2005 | |
| Metabolism | Detecting cell lysis using viscosity monitoring in E. coli fermentation to prevent product loss. | Newton JM, Schofield D, Vlahopoulou J, Zhou Y. | Biotechnol Prog | 10.1002/btpr.2292 | 2016 | |
| Metabolism | Additive effects of orexin B and vasoactive intestinal polypeptide on LL-37-mediated antimicrobial activities. | Ohta K, Kajiya M, Zhu T, Nishi H, Mawardi H, Shin J, Elbadawi L, Kamata N, Komatsuzawa H, Kawai T. | J Neuroimmunol | 10.1016/j.jneuroim.2010.11.009 | 2011 | |
| Metabolism | Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production. | Causey TB, Zhou S, Shanmugam KT, Ingram LO. | Proc Natl Acad Sci U S A | 10.1073/pnas.0337684100 | 2003 | |
| Metabolism | Engineering a synthetic dual-organism system for hydrogen production. | Waks Z, Silver PA. | Appl Environ Microbiol | 10.1128/aem.02009-08 | 2009 | |
| A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems. | Cai Y, Usher B, Gutierrez C, Tolcan A, Mansour M, Fineran PC, Condon C, Neyrolles O, Genevaux P, Blower TR. | Sci Adv | 10.1126/sciadv.abb6651 | 2020 | | |
| Metabolism | Production of optically pure D-lactic acid in mineral salts medium by metabolically engineered Escherichia coli W3110. | Zhou S, Causey TB, Hasona A, Shanmugam KT, Ingram LO. | Appl Environ Microbiol | 10.1128/aem.69.1.399-407.2003 | 2003 | |
| Metabolism | Novel rapidly diversifiable antimicrobial RNA polymerase switch region inhibitors with confirmed mode of action in Haemophilus influenzae. | Buurman ET, Foulk MA, Gao N, Laganas VA, McKinney DC, Moustakas DT, Rose JA, Shapiro AB, Fleming PR. | J Bacteriol | 10.1128/jb.01103-12 | 2012 | |
| Metabolism | The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase. | Wout P, Pu K, Sullivan SM, Reese V, Zhou S, Lin B, Maddock JR. | J Bacteriol | 10.1128/jb.186.16.5249-5257.2004 | 2004 | |
| Localization of the ferredoxin (fdx) gene on the physical map of the Escherichia coli chromosome. | Ta DT, Seaton BL, Vickery LE. | J Bacteriol | 10.1128/jb.174.17.5760-5761.1992 | 1992 | | |
| Novel bacterial NAD+-dependent DNA ligase inhibitors with broad-spectrum activity and antibacterial efficacy in vivo. | Mills SD, Eakin AE, Buurman ET, Newman JV, Gao N, Huynh H, Johnson KD, Lahiri S, Shapiro AB, Walkup GK, Yang W, Stokes SS. | Antimicrob Agents Chemother | 10.1128/aac.01181-10 | 2011 | | |
| Pathogenicity | Gene-specific effects of antisense phosphorodiamidate morpholino oligomer-peptide conjugates on Escherichia coli and Salmonella enterica serovar typhimurium in pure culture and in tissue culture. | Tilley LD, Hine OS, Kellogg JA, Hassinger JN, Weller DD, Iversen PL, Geller BL. | Antimicrob Agents Chemother | 10.1128/aac.01286-05 | 2006 | |
| Metabolism | Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals. | Murarka A, Dharmadi Y, Yazdani SS, Gonzalez R. | Appl Environ Microbiol | 10.1128/aem.02192-07 | 2008 | |
| Effect of growth phase and parental cell survival in river water on plasmid transfer between Escherichia coli strains. | Muela A, Pocino M, Arana I, Justo JI, Iriberri J, Barcina I. | Appl Environ Microbiol | 10.1128/aem.60.12.4273-4278.1994 | 1994 | | |
| Delineating the importance of serum opsonins and the bacterial capsule in affecting the uptake and killing of Burkholderia pseudomallei by murine neutrophils and macrophages. | Mulye M, Bechill MP, Grose W, Ferreira VP, Lafontaine ER, Wooten RM. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0002988 | 2014 | | |
| Transcriptional effects of CRP* expression in Escherichia coli. | Khankal R, Chin JW, Ghosh D, Cirino PC. | J Biol Eng | 10.1186/1754-1611-3-13 | 2009 | | |
| Two amino acid residues of transposase contributing to differential transposability of IS1 elements in Escherichia coli. | Chen JH, Hsu WB, Hwang JL. | J Bacteriol | 10.1128/jb.180.19.5279-5283.1998 | 1998 | | |
| Pathogenicity | Molecular characterization of benzimidazole resistance in Helicobacter pylori. | Mills SD, Yang W, MacCormack K. | Antimicrob Agents Chemother | 10.1128/aac.48.7.2524-2530.2004 | 2004 | |
| The transcriptional repressor BLIMP1 curbs host defenses by suppressing expression of the chemokine CCL8. | Severa M, Islam SA, Waggoner SN, Jiang Z, Kim ND, Ryan G, Kurt-Jones E, Charo I, Caffrey DR, Boyartchuk VL, Luster AD, Fitzgerald KA. | J Immunol | 10.4049/jimmunol.1301799 | 2014 | | |
| Metabolism | De novo synthesis of thymidylate via deoxycytidine in dcd (dCTP deaminase) mutants of Escherichia coli. | Weiss B, Wang L. | J Bacteriol | 10.1128/jb.176.8.2194-2199.1994 | 1994 | |
| Evidence for a holin-like protein gene fully embedded out of frame in the endolysin gene of Staphylococcus aureus bacteriophage 187. | Loessner MJ, Gaeng S, Scherer S. | J Bacteriol | 10.1128/jb.181.15.4452-4460.1999 | 1999 | | |
| Metabolism | Characterization of an Escherichia coli aromatic hydroxylase with a broad substrate range. | Prieto MA, Perez-Aranda A, Garcia JL. | J Bacteriol | 10.1128/jb.175.7.2162-2167.1993 | 1993 | |
| Metabolism | The Hsc66-Hsc20 chaperone system in Escherichia coli: chaperone activity and interactions with the DnaK-DnaJ-grpE system. | Silberg JJ, Hoff KG, Vickery LE. | J Bacteriol | 10.1128/jb.180.24.6617-6624.1998 | 1998 | |
| Phylogeny | Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometry. | Valentine N, Wunschel S, Wunschel D, Petersen C, Wahl K. | Appl Environ Microbiol | 10.1128/aem.71.1.58-64.2005 | 2005 | |
| Metabolism | Stereospecific production of the herbicide phosphinothricin (glufosinate): purification of aspartate transaminase from Bacillus stearothermophilus, cloning of the corresponding gene, aspC, and application in a coupled transaminase process. | Bartsch K, Schneider R, Schulz A. | Appl Environ Microbiol | 10.1128/aem.62.10.3794-3799.1996 | 1996 | |
| Metabolism | Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. | Varma A, Palsson BO. | Appl Environ Microbiol | 10.1128/aem.60.10.3724-3731.1994 | 1994 | |
| Metabolism | A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor sigma32. | Gamer J, Multhaup G, Tomoyasu T, McCarty JS, Rudiger S, Schonfeld HJ, Schirra C, Bujard H, Bukau B. | EMBO J | 10.1002/j.1460-2075.1996.tb00393.x | 1996 | |
| Enzymology | Purification and characterization of recombinant human p50csk protein-tyrosine kinase from an Escherichia coli expression system overproducing the bacterial chaperones GroES and GroEL. | Amrein KE, Takacs B, Stieger M, Molnos J, Flint NA, Burn P. | Proc Natl Acad Sci U S A | 10.1073/pnas.92.4.1048 | 1995 | |
| Recombinant decorsin: dynamics of the RGD recognition site. | Krezel AM, Ulmer JS, Wagner G, Lazarus RA. | Protein Sci | 10.1110/ps.9.8.1428 | 2000 | | |
| Enzymology | Antimicrobial Polymers in the Nano-World. | Alvarez-Paino M, Munoz-Bonilla A, Fernandez-Garcia M. | Nanomaterials (Basel) | 10.3390/nano7020048 | 2017 | |
| Generation of antibody activity from immunoglobulin polypeptide chains produced in Escherichia coli. | Cabilly S, Riggs AD, Pande H, Shively JE, Holmes WE, Rey M, Perry LJ, Wetzel R, Heyneker HL. | Proc Natl Acad Sci U S A | 10.1073/pnas.81.11.3273 | 1984 | | |
| Metabolism | Mutagenesis of aspartic acid-116 enhances the ribonucleolytic activity and angiogenic potency of angiogenin. | Harper JW, Vallee BL. | Proc Natl Acad Sci U S A | 10.1073/pnas.85.19.7139 | 1988 | |
| Crystal structures of bovine chymotrypsin and trypsin complexed to the inhibitor domain of Alzheimer's amyloid beta-protein precursor (APPI) and basic pancreatic trypsin inhibitor (BPTI): engineering of inhibitors with altered specificities. | Scheidig AJ, Hynes TR, Pelletier LA, Wells JA, Kossiakoff AA. | Protein Sci | 10.1002/pro.5560060902 | 1997 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive4578.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
License