Strain identifier

BacDive ID: 138296

Type strain: No

Species: Escherichia coli

Strain Designation: RM215C

Strain history: CIP <- 1999, T.S. Whittam, Pennsylvania State Univ., Pennsylvania, USA: strain ECOR 22 <- H. Ochman and R.K. Selander: strain RM215C

NCBI tax ID(s): 562 (species)

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General

@ref: 39431

BacDive-ID: 138296

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Escherichia coli RM215C is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 39431
  • history: CIP <- 1999, T.S. Whittam, Pennsylvania State Univ., Pennsylvania, USA: strain ECOR 22 <- H. Ochman and R.K. Selander: strain RM215C

doi: 10.13145/bacdive138296.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 39431

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: RM215C

type strain: no

Morphology

cell morphology

  • @ref: 39431
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 39431

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39431MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39431CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
39431CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
39431positivegrowth30mesophilic
39431positivegrowth10-41
39431nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39431
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3943129864mannitol+fermentation
3943116947citrate-carbon source
394314853esculin+hydrolysis
3943117234glucose+fermentation
3943117716lactose+fermentation
3943117632nitrate+reduction
3943116301nitrite+reduction
3943115792malonate-assimilation
39431132112sodium thiosulfate-builds gas from
3943117234glucose+degradation

antibiotic resistance

  • @ref: 39431
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 39431
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3943115688acetoin-
3943117234glucose+

enzymes

@refvalueactivityec
39431oxidase-
39431beta-galactosidase+3.2.1.23
39431alcohol dehydrogenase-1.1.1.1
39431gelatinase-
39431catalase+1.11.1.6
39431lysine decarboxylase+4.1.1.18
39431ornithine decarboxylase-4.1.1.17
39431phenylalanine ammonia-lyase-4.3.1.24
39431tryptophan deaminase-
39431urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39431-+---++---++++-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39431+++++-+--++++++--+++++-++----+-+-+--+------++--+++----++---+++------++--++-+---++-++--+--++++++-+-+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrysample typegeographic locationcontinent
39431BaliIDN
39431IndonesiaIDNAnimal, Steer, healthyBaliAsia

Safety information

risk assessment

  • @ref: 39431
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39431

culture collection no.: CIP 106007, ECOR 22

straininfo link

  • @ref: 95053
  • straininfo: 68457

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39431Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106007Collection of Institut Pasteur (CIP 106007)
68382Automatically annotated from API zym
95053Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68457.1