Strain identifier
version 8.1 (current version)
General
@ref: 45511
BacDive-ID: 142252
keywords: genome sequence, Bacteria, motile
description: Escherichia coli CCUG 11393 is a motile bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
doi: 10.13145/bacdive142252.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 45511
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.936 | |
| 69480 | 99.984 | negative |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.736 |
Isolation, sampling and environmental information
isolation
- @ref: 45511
- sample type: Human feces
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Escherichia coli NCTC9091 | GCA_900449575 | contig | ncbi | 562 |
| 66792 | Escherichia coli strain NCTC9091 | 562.34264 | wgs | patric | 562 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.093 | no |
| anaerobic | no | 94.799 | no |
| halophile | no | 89.992 | no |
| spore-forming | no | 93.582 | no |
| glucose-util | yes | 94.035 | no |
| thermophile | no | 98.99 | no |
| flagellated | no | 59.766 | no |
| motile | yes | 87.919 | no |
| aerobic | yes | 87.665 | no |
| glucose-ferment | yes | 92.347 | no |
External links
@ref: 45511
culture collection no.: CCUG 11393, NCDC H307b, ATCC 23980, NCTC 9091
straininfo link
- @ref: 97796
- straininfo: 45737
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45511 | Curators of the CCUG | https://www.ccug.se/strain?id=11393 | Culture Collection University of Gothenburg (CCUG) (CCUG 11393) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 97796 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID45737.1 |