Strain identifier

BacDive ID: 145680

Type strain: No

Species: Escherichia coli

Strain Designation: B1409-C1

Strain history: CIP <- 1999, D. Fréchon, Sanofi, Marnes la Coquette, France <- 1997, ATCC <- CDC: strain B1409-C1

NCBI tax ID(s): 562 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 49547

BacDive-ID: 145680

keywords: genome sequence, Bacteria, facultative anaerobe, motile

description: Escherichia coli B1409-C1 is a facultative anaerobe, motile bacterium that was isolated from Human stool,patient with haemolytic uremic syndrom.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118358
  • history: CIP <- 1999, D. Fréchon, Sanofi, Marnes la Coquette, France <- 1997, ATCC <- CDC: strain B1409-C1

doi: 10.13145/bacdive145680.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 49547

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: B1409-C1

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.015
6948099.985negative
118358yesnegativerod-shaped

colony morphology

  • @ref: 118358

Culture and growth conditions

culture medium

@refnamegrowthlink
118358CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
118358CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
118358positivegrowth30-41
118358nogrowth5psychrophilic
118358nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118358
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.766
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11835829864mannitol+fermentation
11835816947citrate-carbon source
1183584853esculin-hydrolysis
11835817234glucose+fermentation
11835817716lactose+fermentation
11835817632nitrate+reduction
11835816301nitrite+reduction
11835815792malonate-assimilation
118358132112sodium thiosulfate-builds gas from
11835817234glucose+degradation

antibiotic resistance

  • @ref: 118358
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 118358
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11835815688acetoin-
11835817234glucose+

enzymes

@refvalueactivityec
118358oxidase-
118358beta-galactosidase+3.2.1.23
118358alcohol dehydrogenase-1.1.1.1
118358gelatinase-
118358catalase+1.11.1.6
118358lysine decarboxylase+4.1.1.18
118358ornithine decarboxylase+4.1.1.17
118358phenylalanine ammonia-lyase-4.3.1.24
118358tryptophan deaminase-
118358urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118358-+++-+----++++-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118358+++++++++++++++--+-+++-++----+-+-+---------+++-+++----++---++----++-++-----+---++-----+--++++++-+-+

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
49547Human stool,patient with haemolytic uremic syndrom1984North CarolinaUSAUSANorth America
118358Stool of patient with hemolytic uremic syndromeNorth CarolinaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Patient

Safety information

risk assessment

  • @ref: 118358
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli ATCC 43889GCA_006874785completencbi562
66792Escherichia coli O157:H7 str. EC508478007.5wgspatric478007
66792Escherichia coli strain ATCC 43889562.50496wgspatric562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.317no
flagellatedno59.787no
gram-positiveno97.968no
anaerobicno94.663no
aerobicyes84.872no
halophileno90.909no
spore-formingno93.958no
thermophileno99.08no
glucose-utilyes94.29no
glucose-fermentyes93.53no

External links

@ref: 49547

culture collection no.: CCUG 29199, ATCC 43889, CIP 106324

straininfo link

  • @ref: 100658
  • straininfo: 42107

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49547Curators of the CCUGhttps://www.ccug.se/strain?id=29199Culture Collection University of Gothenburg (CCUG) (CCUG 29199)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
100658Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42107.1
118358Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106324Collection of Institut Pasteur (CIP 106324)