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Japan Collection of Microorganisms Dashboard

This project contains strains deposited in the Japan Collection of Microorganisms (JCM). Japan Collection of Microorganisms, Institute of Physical and Chemical Research (RIKEN), Wako, Saitama 351-0198, Japan.

Total strains
13479
Total species
8411
Mean cell length / width
2.91 / 0.68 µm
Mean temperature optimum
31.27
Mean pH optimum
7.2
Mean incubation time
7.37 days
Mean salt optimum
3.34 %
16S sequence accessions
11772
BacDive ID Type strain Species Culture col. no. NCBI tax ID(s)
100065 No
100082 No
100158 No
100171 No
100547 No
100901 No
103564 No
103565 No
105442 No
127857 No
128413 No
128714 No
164352 Yes Absicoccus porci JCM 32769, KCTC 15747, KCTC 1574 2486576 (species)
159837 Yes Abyssibacter profundi KCTC 52933, MCCC 1K03450, JCM 32025 2182787 (species)
132558 Yes Abyssicoccus albus DSM 29158, CCTCC AB 2014213, YIM M12140, JCM 30296 1817405 (species)
164056 Yes Abyssisolibacter fermentans JCM 31420, KCTC 15524 1766203 (species)
7517 Yes Acaricomes phytoseiuli DSM 14247, CCUG 49701, NBRC 107788, CIP 109141, JCM 14300 1120917 (strain), 291968 (species)
134101 Yes Acetanaerobacterium elongatum JCM 12359, AS 1.5012 258515 (species)
164491 Yes Acetilactobacillus jinshanensis JCM 33270, CICC 6269 1720083 (species)
164132 No Acetivibrio saccincola JCM 31827, DSM 104321 1677857 (species)
2827 Yes Acetivibrio straminisolvens DSM 16021, IAM 15070, JCM 21531, NBRC 103399 1294263 (strain), 253314 (species)
2729 Yes Acetivibrio thermocellus DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, CECT 593, IAM 13660, LMG 10435, NBRC 103400, NRRL B-4536, VPI 7372 1515 (species), 203119 (strain)
2730 No Acetivibrio thermocellus DSM 2360, JCM 9323, ATCC 35609 1515 (species), 572545 (strain)
131392 Yes Acetoanaerobium pronyense DSM 27512, JCM 19400 1482736 (species)
2717 Yes Acetoanaerobium sticklandii DSM 519, ATCC 12662, CCUG 9281, JCM 1433, NCIMB 10654, BCRC 14485 1511 (species), 499177 (strain)
2 Yes Acetobacter aceti DSM 3508, ATCC 15973, NCIB 8621, CCUG 18122, LMG 1261-t1, LMG 1261 1, CCTM 3043, NBRC 14818, JCM 7641, BCRC 11688, CCM 3620, CECT 298, CGMCC 1.1809, CIP 103111, ICMP 8807, IFO 14818, LMD 23.1, LMG 1261, LMG 1504, NCCB 23001, NCIMB 8621, VTT E-042567, VTT E-97828 435 (species), 887700 (strain)
135985 No Acetobacter aceti CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281 435 (species)
162842 No Acetobacter aceti JCM 20276, IAM 1814, LMG 1372, LMG 1695 435 (species)
163091 No Acetobacter aceti JCM 21164, ATCC 12878, IAM 14350, LMG 1520, NCIMB 6656, NCTC 6656 435 (species)
163298 No Acetobacter aceti JCM 25003, LMG 1506, LMG 5 435 (species)
163299 No Acetobacter aceti JCM 25004, LMG 1496 435 (species)
163300 No Acetobacter aceti JCM 25005, LMG 1535 435 (species)
3 No Acetobacter cerevisiae DSM 2324, ATCC 6438, LMG 1592, NCIB 2224, NRRL B-468, JCM 20269, CCM 2363, CIP 102720, IAM 1803, IFO 3170, LMG 1643, NBRC 3170, NCIMB 2224, NCTC 2224, IMET 10613 178900 (species)
12 Yes Acetobacter cerevisiae DSM 14362, ATCC 23765, LMG 1625, NCIMB 8894, JCM 17273, CIP 107722, VTT E-042461 1307903 (strain), 178900 (species)
15 Yes Acetobacter cibinongensis DSM 15549, IFO 16605, JCM 11196, NBRC 16605, NRIC 0482, CIP 107380 1307904 (strain), 146475 (species)
10 Yes Acetobacter estunensis DSM 4493, ATCC 23753, CCUG 18130, IAM 14359, LMG 1626, NCIMB 8935, JCM 21172, BCRC 12953, CCM 3613, IFO 13751, NBRC 13751 104097 (species)
18 Yes Acetobacter indonesiensis DSM 15552, IFO 16471, JCM 10948, NBRC 16471, NRIC 0313, BCRC 17167, LMG 19824 104101 (species), 1307908 (strain)
23488 No Acetobacter indonesiensis DSM 3805, NCIB 7215, ATCC 9432, CECT 474, LMG 1607, NCIMB 7125, NCIMB 8141, NCTC 7215, NRRL B-55, JCM 21170, IAM 14357, NCIMB 7215, NCIMB 8090 104101 (species)
9 Yes Acetobacter lovaniensis DSM 4491, ATCC 12875, CCUG 18127, IMET 10734, JCM 17121, LMD 31.2, LMG 1579, LMG 1617, NCIMB 8620, CCM 3606, ICMP 8610, IFO 13753, NBRC 13753, NCCB 31002 104100 (species)
13 Yes Acetobacter malorum DSM 14337, CIP 108768, LMG 1746, JCM 17274, ATCC 14337, BCRC 17641, VTT E-042462 1307910 (strain), 178901 (species)
20 Yes Acetobacter nitrogenifigens DSM 23921, LMG 23498, MTCC 6912, JCM 33644, BCC 33377, BCRC 80095, NBRC 105050, NRIC 0976, TBRC 15 1120919 (strain), 285268 (species)
161632 No Acetobacter okinawensis JCM 15829 1076594 (species)
163333 Yes Acetobacter okinawensis JCM 25146, KACC 19723, LMG 26457, NBRC 111467, NRIC 0658 1076594 (species), 1236501 (strain)
163334 No Acetobacter okinawensis JCM 25147, NRIC 0659 1076594 (species)
163344 No Acetobacter okinawensis JCM 25387 1076594 (species)
163346 No Acetobacter okinawensis JCM 25390 1076594 (species)
163348 No Acetobacter okinawensis JCM 25401 1076594 (species)
163349 No Acetobacter okinawensis JCM 25402 1076594 (species)
16 Yes Acetobacter orientalis DSM 15550, IFO 16606, NBRC 16606, NRIC 0481, JCM 11195, CIP 107379, JCM 1195 1307913 (strain), 146474 (species)
8 Yes Acetobacter orleanensis DSM 4492, ATCC 12876, CCUG 18126, IMET 10752, LMD 31.3, LMG 1282, LMG 1583, NCIMB 8622, PDDCC 8809, KCTC 12329, JCM 7639, BCRC 11568, CCM 3610, ICMP 8809, IFO 13752, NBRC 13752, NCCB 31003, VTT E-042463 104099 (species), 1231342 (strain)
163947 Yes Acetobacter oryzifermentans JCM 31096, KACC 19301, LMG 31327 1633874 (species)
164536 Yes Acetobacter oryzoeni JCM 33371, KACC 21201 2500548 (species)
163331 Yes Acetobacter papayae JCM 25143, KACC 19722, LMG 26456, NBRC 111466, NRIC 0655 1076592 (species), 1234671 (strain)
163332 No Acetobacter papayae JCM 25144, NRIC 0656 1076592 (species)
4 Yes Acetobacter pasteurianus DSM 3509, ATCC 33445, LMD 22.1, JCM 7640, BCRC 14145, CCM 2374, CCUG 18125, CGMCC 1.1810, CIP 103108, ICMP 8808, LMG 1262, NBRC 106471, NCCB 22001, NCIMB 12228, VTT E-97830, IMET 10733 438 (species), 481145 (subspecies)
6 No Acetobacter pasteurianus DSM 46618, ATCC 9433, CCM 1774, IFO 3189, IMET 10600, NBRC 3189, NCIB 8089, NRRL B-147, JCM 20284, IAM 1823, LMG 1609, LMG 1779, NCIMB 8089 438 (species)
7 No Acetobacter pasteurianus DSM 46619, ATCC 6439, CCM 1771, IFO 3222, IMET 10602, Lock 83, NBRC 3222, NCIB 3924, NCTC 3924, JCM 20279, IAM 1817, LMD 39.4, LMG 1577, NCIMB 3924 1226664 (strain), 438 (species)
24 No Acetobacter pasteurianus DSM 2347, ATCC 12874, NCIB 8618, IFO 13755, JCM 25077, ATCC 12784, BCRC 12954, CCM 3615, CCUG 18131, KACC 19721, LMG 1635, NBRC 13755, NCCB 88049, NCCB 89009, NCIMB 8618, NRIC 0475 104098 (species)
25 No Acetobacter pasteurianus DSM 2006, ATCC 838, IAM 14432, NCIB 8087, JCM 21215, CCTM 3047, LMG 1634, NCIMB 8087 438 (species)
135986 No Acetobacter pasteurianus CIP 102999, IAM 1804, JCM 20270 438 (species)
135987 No Acetobacter pasteurianus CIP 103000, IAM 1808, IFO 3188, JCM 20273, NBRC 3188, NRRL B-56 1226663 (strain), 438 (species)
135988 No Acetobacter pasteurianus CIP 103001, IAM 1811, IFO 3299, JCM 20274, LMG 1553, NBRC 3299 1226665 (strain), 438 (species)
136130 No Acetobacter pasteurianus CIP 102721, IAM 1826, JCM 20287 438 (species)
162841 No Acetobacter pasteurianus JCM 20272, IAM 1807 438 (species)
162906 No Acetobacter pasteurianus JCM 20384, ATCC 9322, IAM 12073, LMG 1604, NCIMB 7113, NCTC 7113 438 (species)
163093 No Acetobacter pasteurianus JCM 21167, ATCC 23758, IAM 14353, LMG 1598, NCIMB 6424, NCTC 6424 438 (species)
163094 No Acetobacter pasteurianus JCM 21168, ATCC 23759, IAM 14354, LMG 1601, NCIMB 6429, NCIMB 8133, NCTC 6429 438 (species)
163095 No Acetobacter pasteurianus JCM 21171, ATCC 12873, IAM 14358, LMG 1612, NCIMB 8138 438 (species)
163096 No Acetobacter pasteurianus JCM 21173, ATCC 23756, IAM 14360, LMG 1628, NCIMB 9015 438 (species)
163109 No Acetobacter pasteurianus JCM 21216, ATCC 9323, IAM 14433, LMD 46.3, LMG 1550, LMG 1554, NCIMB 4937, NCIMB 8163, NCTC 4937 438 (species)
163110 No Acetobacter pasteurianus JCM 21217, ATCC 12879, IAM 14434, LMD 75.2, LMG 1549 438 (species)
163301 No Acetobacter pasteurianus JCM 25075, IFO 13754, NBRC 13754, NCIMB 9015 438 (species)
163302 Yes Acetobacter pasteurianus JCM 25076, LMG 1590 481146 (species)
163337 Yes Acetobacter persici JCM 25330, KACC 19724, LMG 26458, NBRC 111468, NRIC 0961 1076596 (species), 1236503 (strain)
163338 No Acetobacter persici JCM 25332 1076596 (species)
163090 No Acetobacter sicerae JCM 21163, ATCC 23747, IAM 14349, LMG 1530, NCIMB 8940 85325 (species)
163097 No Acetobacter sp. JCM 21174, ATCC 15487, IAM 14361 440 (species)
163098 No Acetobacter sp. JCM 21175, ATCC 21409, IAM 14362, LMG 1573 440 (species)
14 Yes Acetobacter syzygii DSM 15548, IFO 16604, JCM 11197, NBRC 16604, NRIC 0483, CIP 107378 1307919 (strain), 146476 (species)
17 Yes Acetobacter tropicalis DSM 15551, IFO 16470, NBRC 16470, NRIC 0312, JCM 10947, BCRC 17166, LMG 19825 104102 (species), 1307920 (strain)
163303 No Acetobacter tropicalis JCM 25084, NRIC 0321 104102 (species)
160880 No Acetobacter xylinum subsp. nonacetoxidans JCM 10150 28448 (species)
86 No Acetobacter xylinus DSM 2325, ATCC 11142, NCIB 5346, JCM 21166, CECT 473, IAM 14352, LMD 75.1, LMG 1518, LMG 1538, NCIMB 5346, NCTC 5346 28448 (species)
87 No Acetobacter xylinus DSM 2004, ATCC 23768, NCIB 7029, JCM 21169, IAM 14356, NCIMB 7029, NCTC 7029 28448 (species)
88 Yes Acetobacter xylinus DSM 6513, ATCC 23767, BCC 7226, JCM 7644, LMG 1515, NBRC 15237, NCIMB 11664, BCRC 12952, CCM 3611, CCUG 37299, CECT 7351, CIP 103107, IFO 15237, NCTC 4112, VTT E-97831 1220579 (strain), 28448 (species)
165557 No Acetobacter xylinus JCM 7664, IFO 13693, NBRC 13693 1234668 (strain), 28448 (species)
5401 Yes Acetobacterium wieringae DSM 1911, ATCC 43740, JCM 2380 52694 (species)
5402 Yes Acetobacterium woodii DSM 1030, ATCC 29683, JCM 2381, WB 1, NBRC 117002 33952 (species), 931626 (strain)
131580 Yes Acetobacteroides hydrogenigenes DSM 24657, CGMCC 1.5173, JCM 17603 979970 (species)
1579 Yes Acetomicrobium faecale DSM 20678, JCM 30420 937334 (species)
17777 Yes Acetomicrobium mobile DSM 13181, ATCC BAA-54, JCM 12221 891968 (strain), 97477 (species)
318 Yes Achromobacter denitrificans DSM 30026, ATCC 15173, NCTC 8582, CCUG 407, LMG 1231, CIP 77.15, JCM 5490, LMG 3510, CECT 449, BCRC 12838, BCRC 14342, CCM 3427, CGMCC 1.1800, IAM 12370, IFO 15125, JCM 9657, NBRC 15125, NCIMB 11961, VTT E-991293, NCIB 11961 1255278 (strain), 32002 (species)
136807 No Achromobacter denitrificans CIP 60.83, CCUG 61949, LMG 1860, JCM 20672, IAM 12595 32002 (species)
141589 No Achromobacter denitrificans CCUG 3353, IAM 12556, JCM 20635, LMG 3412, NCIMB 9387 32002 (species)
162416 No Achromobacter denitrificans JCM 19165 32002 (species)
162975 No Achromobacter denitrificans JCM 20641, IAM 12563, NCIMB 10771 32002 (species)
162976 No Achromobacter denitrificans JCM 20642, IAM 12564, NCIMB 9550 32002 (species)
136829 No Achromobacter mucicolens CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, LMG 3415, JCM 9658 1389922 (species)
320 Yes Achromobacter piechaudii DSM 10342, ATCC 43552, CIP 60.75, IAM 12591, LMG 1873, JCM 20668, CGMCC 1.10399, NBRC 102461, NCTC 11970, CCUG 724, NBIMCC 557, Hugh 366-5 1216977 (strain), 72556 (species)
162986 No Achromobacter piechaudii JCM 20720, CCM 281, IAM 12661, LMG 1861, NCIMB 1051 72556 (species)

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