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Japan Collection of Microorganisms Dashboard

The Japan Collection of Microorganisms dashboard enables a fast overview of the data provided by the database including all strains. For a representative overview filter for type strain data by clicking "Type strains". Clicking on data points within the graphs is starting queries in the according specialized search tools within a new window.

Please note that this tool is build for an easy access to the data and has no claim to completeness.

Total strains
13480
Total species
8403
Mean cell length / width
2.91 / 0.68 µm
Mean temperature optimum
31.27
Mean pH optimum
7.2
Mean incubation time
7.37 days
Mean salt optimum
3.34 %
16S sequence accessions
11772
BacDive ID Type strain Species Culture col. no. NCBI tax ID(s)
3976 No DSM 15630, JCM 39320
10616 Yes CCUG 53827, ATCC BAA-1442, JCM 14573, DSM 45073, CDC W8543
10771 Yes DSM 44691, JCM 14878, IFM 10860 163673 (species)
10772 Yes DSM 44692, JCM 14880, IFM 10861
10812 Yes DSM 44996, OFN 05.31, JCM 14669, IFM 10818
10819 Yes DSM 45063, CCTCC AA 205004, YIM 37293, JCM 14876, IFM 10865
13538 Yes DSM 5891, ATCC 25651, JCM 20686, IAM 12615, IFO 15760, LMG 123, NBRC 15760, NCIMB 2207 76979 (species)
13539 Yes DSM 5889, ATCC 25657, JCM 20690, CECT 4359, IAM 12619, IFO 15768, LMG 135, NBRC 15768, NCIMB 1538
16436 No DSM 41913, JCM 4870, KCC S-0870, NBRC 13978, NRRL 3664, UC 2397, CIP 106835, IFO 13978 285529 (subspecies)
16527 No DSM 44105, IFO 14840, NBRC 14840, JCM 10121, KCTC 9314 262263 (species)
16606 No DSM 44110, ATCC 31214, JCM 3292 47484 (species)
24843 Yes DSM 44578, JCM 11277 161357 (species)
24855 Yes DSM 43890, IFO 14562, JCM 6113, NBRC 14562, BCRC 13420, VKM Ac-1272 65519 (species)
103564 No HKI 0244 36823 (species)
128478 No VKM Ac-1353, JCM 10063 262898 (species)
132887 Yes DSM 17296, JCM xxxxx, JAMB 0156
136347 No CIP 104780, IFO 14427, JCM 3343, NRRL B-16250, BCRC 13736, IFM 0857, IMSNU 21206, NBRC 14427 1223550 (strain), 941182 (species)
136777 Yes CIP 104513, IFO 14340, JCM 10427, BCRC 13734, NBRC 14340, DSM 100631, IMSNU 21193 1223549 (strain), 941183 (species)
138102 No CIP 104823, JCM 3208, BCRC 13744, IFM 0850, IMSNU 21191
138103 No CIP 104826, IAM 0502, JCM 3289, IAM 502 53430 (species)
138104 No CIP 104827, IAM 0503, JCM 3290, IAM 503 53430 (species)
138860 No CIP 59.21, ATCC 9979, NRRL : B-652, NCIMB 9495, CCUG 2347, NRRL B-652, NCTC 9943, JCM 20347, BUCSAV 295, IAM 12014, IFO 3757, NBRC 3757 281467 (species)
141278 Yes CCUG 558, NRRL B-1028, ATCC 19244, NCTC 1656, LMG 2179, CIP 63.54, JCM 20356, CCEB 525, IAM 12023, NCIMB 1656 43306 (species)
141595 No CCUG 3375, ATCC 14545, JCM 14189, CCEB 345, LMG 2290, NCIMB 9677, NRRL B-2081
158460 No DSM 105286, JCM 31988 1715989 (species)
161328 No JCM 13217, MTCC 5219 319468 (species)
161357 No JCM 13414, KCCM 42262
161399 No JCM 13814, KCCM 42310 1869227 (species)
161419 Yes JCM 13947, MTCC 7758 371193 (species)
161510 No JCM 14668, CCTCC AA 205007, DSM 44989, IFM 10817, YIM 36723 373048 (species)
161515 No JCM 14676 1869227 (species)
161530 No JCM 14692
161550 No JCM 14886
161813 Yes JCM 16560, MTCC 10099, MTCC 10101
161840 No JCM 16616 1869227 (species)
161841 No JCM 16617 1869227 (species)
161842 No JCM 16618 1869227 (species)
161887 No JCM 16863 1869227 (species)
161892 No JCM 16992 1869227 (species)
162014 No JCM 17375 1869227 (species)
162043 No JCM 17580, UNIQEM U931
162179 No JCM 18065
162200 No JCM 18222 1869227 (species)
162454 No JCM 19270 1869227 (species)
162455 No JCM 19271 1869227 (species)
162456 No JCM 19272 1869227 (species)
162457 No JCM 19273 1869227 (species)
162460 No JCM 19276 1869227 (species)
162464 No JCM 19292 1869227 (species)
162465 No JCM 19293 1869227 (species)
162467 No JCM 19295 1869227 (species)
162474 No JCM 19303 1869227 (species)
162732 No JCM 20078, IAM 1155, IFO 12052, NBRC 12052 47881 (species)
162810 No JCM 20201, IAM 1528, NBRC 102198 1123957 (subspecies)
162857 No JCM 20302, IAM 10060, NBRC 102480 1123962 (subspecies)
162867 No JCM 20311, IAM 10069, NBRC 102481 1123962 (subspecies)
162898 No JCM 20365, ATCC 27320, IAM 12037, IFO 13335, NBRC 13335 1123912 (species)
162899 No JCM 20367, IAM 12039, NBRC 102200 1123912 (species)
162955 No JCM 20551, IAM 12401, NBRC 102205 1124739 (subspecies)
163185 No JCM 21434, ATCC BAA-319, IAM 14957, NBRC 103149 1123980 (species)
163233 No JCM 21589, IAM 15131, NBRC 102516 1123978 (species)
163446 No JCM 28254 1869227 (species)
163447 No JCM 28255 1869227 (species)
163463 No JCM 28272 1869227 (species)
163467 No JCM 28276 1869227 (species)
163468 No JCM 28277 1869227 (species)
163469 No JCM 28278 1869227 (species)
163477 No JCM 28286 1869227 (species)
163481 No JCM 28292 1869227 (species)
163484 No JCM 28296
163490 No JCM 28301 1869227 (species)
163808 Yes JCM 30478, KCCM 43222
163985 No JCM 31257 1869227 (species)
163996 No JCM 3127, BCRC 12664, IFM 1278, NCIMB 12740, NRRL B-2676 1464048 (species)
164107 No JCM 31632 1869227 (species)
164108 No JCM 31633 1869227 (species)
164109 No JCM 31639 1869227 (species)
164261 No JCM 32458, KCTC 62307
164293 Yes JCM 3254, ATCC 700101, BCRC 13349, CGMCC 4.1055, IFO 14021, IMSNU 22135, KCTC 9544, NBRC 14021, NCIMB 12645, NRRL B-16705 122364 (species)
164319 No JCM 32665, DSM 108248 1869227 (species)
164831 No JCM 3832, IAM 1545
164931 No JCM 4050, ATCC 29810, IFO 13849, NBRC 13849 285575 (subspecies)
164943 No JCM 4132, NRRL B-2290
164951 No JCM 4209
164952 Yes JCM 4210, BCRC 12123, NRRL B-12087
164957 No JCM 4242 2816232 (species)
164988 Yes JCM 4678, ATCC 15883, INMI 058, NRRL B-3042, RIA 337
164990 No JCM 4684, IFO 14890, KCTC 9696, NBRC 14890, NRRL 3176 285553 (species)
164992 No JCM 4687, IFM 1211, KCTC 9486, NCIMB 12694, NRRL 2816 430060 (species)
164993 Yes JCM 4688, NRRL B-3433 1768091 (species)
164995 Yes JCM 4697, NRRL B-11309
165001 No JCM 4867, BCRC 12197, NRRL 3189
165002 No JCM 4869, NRRL 3018
165003 No JCM 4873, ATCC 29815, BCRC 12355, IFO 13852, KCTC 2112, NBRC 13852 285517 (species)
165004 Yes JCM 4874, ATCC 29338, HUT 6220
165005 Yes JCM 4875, ATCC 29339, IFO 14891, NBRC 14891 285554 (species)
165006 No JCM 4876, NRRL 3684 1896 (species)
165010 Yes JCM 4886, ATCC 29782, IFO 13799, NBRC 13799, NRRL B-11488 285488 (species)
165011 No JCM 4888, CGMCC 4.0372, HUT 6196, IFO 13663, NBRC 13663 285458 (species)
165013 No JCM 4890, CGMCC 4.339, HUT 6198, IFO 13665, NBRC 13665 285459 (subspecies)

Taxonomy

Morphology

Cultivation

Metabolism

Isolation sources

Molecular biology & pathogenicity

Tests & profiles