Japan Collection of Microorganisms Dashboard
This project contains strains deposited in the Japan Collection of Microorganisms (JCM). Japan Collection of Microorganisms, Institute of Physical and Chemical Research (RIKEN), Wako, Saitama 351-0198, Japan.
Total strains
13480
13480
Total species
8409
8409
Mean cell length / width
2.91 / 0.68 µm
2.91 / 0.68 µm
Mean temperature optimum
31.27 C°
31.27 C°
Mean pH optimum
7.2
7.2
Mean incubation time
7.37 days
7.37 days
Mean salt optimum
3.37 %
3.37 %
16S sequence accessions
11780
11780
| BacDive ID | Type strain | Species | Culture col. no. | NCBI tax ID(s) |
|---|---|---|---|---|
| 164352 |  |
Absicoccus porci | JCM 32769, KCTC 15747, KCTC 1574 | 2486576 (species) |
| 159837 | |
Abyssibacter profundi | KCTC 52933, MCCC 1K03450, JCM 32025 | 2182787 (species) |
| 132558 | |
Abyssicoccus albus | DSM 29158, CCTCC AB 2014213, YIM M12140, JCM 30296 | 1817405 (species) |
| 164056 | |
Abyssisolibacter fermentans | JCM 31420, KCTC 15524 | 1766203 (species) |
| 7517 | |
Acaricomes phytoseiuli | DSM 14247, CCUG 49701, NBRC 107788, CIP 109141, JCM 14300 | 1120917 (strain), 291968 (species) |
| 134101 | |
Acetanaerobacterium elongatum | JCM 12359, AS 1.5012 | 258515 (species) |
| 164491 | |
Acetilactobacillus jinshanensis | JCM 33270, CICC 6269 | 1720083 (species) |
| 164132 |  |
Acetivibrio saccincola | JCM 31827, DSM 104321 | 1677857 (species) |
| 2827 | |
Acetivibrio straminisolvens | DSM 16021, IAM 15070, JCM 21531, NBRC 103399 | 1294263 (strain), 253314 (species) |
| 2729 | |
Acetivibrio thermocellus | DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, CECT 593, IAM 13660, LMG 10435, NBRC 103400, NRRL B-4536, VPI 7372 | 1515 (species), 203119 (strain) |
| 2730 | |
Acetivibrio thermocellus | DSM 2360, JCM 9323, ATCC 35609 | 1515 (species), 572545 (strain) |
| 131392 | |
Acetoanaerobium pronyense | DSM 27512, JCM 19400 | 1482736 (species) |
| 2717 | |
Acetoanaerobium sticklandii | DSM 519, ATCC 12662, CCUG 9281, JCM 1433, NCIMB 10654, BCRC 14485 | 1511 (species), 499177 (strain) |
| 2 | |
Acetobacter aceti | DSM 3508, ATCC 15973, NCIB 8621, CCUG 18122, LMG 1261-t1, LMG 1261 1, CCTM 3043, NBRC 14818, JCM 7641, BCRC 11688, CCM 3620, CECT 298, CGMCC 1.1809, CIP 103111, ICMP 8807, IFO 14818, LMD 23.1, LMG 1261, LMG 1504, NCCB 23001, NCIMB 8621, VTT E-042567, VTT E-97828 | 435 (species), 887700 (strain) |
| 135985 | |
Acetobacter aceti | CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281 | 435 (species) |
| 162842 | |
Acetobacter aceti | JCM 20276, IAM 1814, LMG 1372, LMG 1695 | 435 (species) |
| 163091 | |
Acetobacter aceti | JCM 21164, ATCC 12878, IAM 14350, LMG 1520, NCIMB 6656, NCTC 6656 | 435 (species) |
| 163298 | |
Acetobacter aceti | JCM 25003, LMG 1506, LMG 5 | 435 (species) |
| 163299 | |
Acetobacter aceti | JCM 25004, LMG 1496 | 435 (species) |
| 163300 | |
Acetobacter aceti | JCM 25005, LMG 1535 | 435 (species) |
| 3 | |
Acetobacter cerevisiae | DSM 2324, ATCC 6438, LMG 1592, NCIB 2224, NRRL B-468, JCM 20269, CCM 2363, CIP 102720, IAM 1803, IFO 3170, LMG 1643, NBRC 3170, NCIMB 2224, NCTC 2224, IMET 10613 | 178900 (species) |
| 12 | |
Acetobacter cerevisiae | DSM 14362, ATCC 23765, LMG 1625, NCIMB 8894, JCM 17273, CIP 107722, VTT E-042461 | 1307903 (strain), 178900 (species) |
| 15 | |
Acetobacter cibinongensis | DSM 15549, IFO 16605, JCM 11196, NBRC 16605, NRIC 0482, CIP 107380 | 1307904 (strain), 146475 (species) |
| 10 | |
Acetobacter estunensis | DSM 4493, ATCC 23753, CCUG 18130, IAM 14359, LMG 1626, NCIMB 8935, JCM 21172, BCRC 12953, CCM 3613, IFO 13751, NBRC 13751 | 104097 (species) |
| 18 | |
Acetobacter indonesiensis | DSM 15552, IFO 16471, JCM 10948, NBRC 16471, NRIC 0313, BCRC 17167, LMG 19824 | 104101 (species), 1307908 (strain) |
| 23488 | |
Acetobacter indonesiensis | DSM 3805, NCIB 7215, ATCC 9432, CECT 474, LMG 1607, NCIMB 7125, NCIMB 8141, NCTC 7215, NRRL B-55, JCM 21170, IAM 14357, NCIMB 7215, NCIMB 8090 | 104101 (species) |
| 9 | |
Acetobacter lovaniensis | DSM 4491, ATCC 12875, CCUG 18127, IMET 10734, JCM 17121, LMD 31.2, LMG 1579, LMG 1617, NCIMB 8620, CCM 3606, ICMP 8610, IFO 13753, NBRC 13753, NCCB 31002 | 104100 (species) |
| 13 | |
Acetobacter malorum | DSM 14337, CIP 108768, LMG 1746, JCM 17274, ATCC 14337, BCRC 17641, VTT E-042462 | 1307910 (strain), 178901 (species) |
| 20 | |
Acetobacter nitrogenifigens | DSM 23921, LMG 23498, MTCC 6912, JCM 33644, BCC 33377, BCRC 80095, NBRC 105050, NRIC 0976, TBRC 15 | 1120919 (strain), 285268 (species) |
| 161632 | |
Acetobacter okinawensis | JCM 15829 | 1076594 (species) |
| 163333 | |
Acetobacter okinawensis | JCM 25146, KACC 19723, LMG 26457, NBRC 111467, NRIC 0658 | 1076594 (species), 1236501 (strain) |
| 163334 | |
Acetobacter okinawensis | JCM 25147, NRIC 0659 | 1076594 (species) |
| 163344 | |
Acetobacter okinawensis | JCM 25387 | 1076594 (species) |
| 163346 | |
Acetobacter okinawensis | JCM 25390 | 1076594 (species) |
| 163348 | |
Acetobacter okinawensis | JCM 25401 | 1076594 (species) |
| 163349 | |
Acetobacter okinawensis | JCM 25402 | 1076594 (species) |
| 16 | |
Acetobacter orientalis | DSM 15550, IFO 16606, JCM 1195, NBRC 16606, NRIC 0481, CIP 107379 | 1307913 (strain), 146474 (species) |
| 8 | |
Acetobacter orleanensis | DSM 4492, ATCC 12876, CCUG 18126, IMET 10752, LMD 31.3, LMG 1282, LMG 1583, NCIMB 8622, PDDCC 8809, KCTC 12329, JCM 7639, BCRC 11568, CCM 3610, ICMP 8809, IFO 13752, NBRC 13752, NCCB 31003, VTT E-042463 | 104099 (species), 1231342 (strain) |
| 163947 | |
Acetobacter oryzifermentans | JCM 31096, KACC 19301, LMG 31327 | 1633874 (species) |
| 164536 | |
Acetobacter oryzoeni | JCM 33371, KACC 21201 | 2500548 (species) |
| 163331 | |
Acetobacter papayae | JCM 25143, KACC 19722, LMG 26456, NBRC 111466, NRIC 0655 | 1076592 (species), 1234671 (strain) |
| 163332 | |
Acetobacter papayae | JCM 25144, NRIC 0656 | 1076592 (species) |
| 4 | |
Acetobacter pasteurianus | DSM 3509, ATCC 33445, LMD 22.1, JCM 7640, BCRC 14145, CCM 2374, CCUG 18125, CGMCC 1.1810, CIP 103108, ICMP 8808, LMG 1262, NBRC 106471, NCCB 22001, NCIMB 12228, VTT E-97830, IMET 10733 | 438 (species) |
| 5 | |
Acetobacter pasteurianus | DSM 46617, ATCC 23762, ATCC 7839, IAM 1825, IFO 3191, IMET 10599, NBRC 3191, NCIB 7214, NCIB 8148, NCTC 7214, NRRL B-65, JCM 20286, KCTC 12289, LMG 1606, NCIMB 7214, NCIMB 8148, NRRL B-754, VTT E-74002, CIP 103002 | 438 (species), 940265 (strain) |
| 6 | |
Acetobacter pasteurianus | DSM 46618, ATCC 9433, CCM 1774, IFO 3189, IMET 10600, NBRC 3189, NCIB 8089, NRRL B-147, JCM 20284, IAM 1823, LMG 1609, LMG 1779, NCIMB 8089 | 438 (species) |
| 7 | |
Acetobacter pasteurianus | DSM 46619, ATCC 6439, CCM 1771, IFO 3222, IMET 10602, Lock 83, NBRC 3222, NCIB 3924, NCTC 3924, JCM 20279, IAM 1817, LMD 39.4, LMG 1577, NCIMB 3924 | 1226664 (strain), 438 (species) |
| 24 | |
Acetobacter pasteurianus | DSM 2347, ATCC 12874, NCIB 8618, IFO 13755, JCM 25077, ATCC 12784, BCRC 12954, CCM 3615, CCUG 18131, KACC 19721, LMG 1635, NBRC 13755, NCCB 88049, NCCB 89009, NCIMB 8618, NRIC 0475 | 104098 (species) |
| 25 | |
Acetobacter pasteurianus | DSM 2006, ATCC 838, IAM 14432, NCIB 8087, JCM 21215, CCTM 3047, LMG 1634, NCIMB 8087 | 438 (species) |
| 135986 | |
Acetobacter pasteurianus | CIP 102999, IAM 1804, JCM 20270 | 438 (species) |
| 135987 | |
Acetobacter pasteurianus | CIP 103000, IAM 1808, IFO 3188, JCM 20273, NBRC 3188, NRRL B-56 | 1226663 (strain), 438 (species) |
| 135988 | |
Acetobacter pasteurianus | CIP 103001, IAM 1811, IFO 3299, JCM 20274, LMG 1553, NBRC 3299 | 1226665 (strain), 438 (species) |
| 136130 | |
Acetobacter pasteurianus | CIP 102721, IAM 1826, JCM 20287 | 438 (species) |
| 162841 | |
Acetobacter pasteurianus | JCM 20272, IAM 1807 | 438 (species) |
| 162906 | |
Acetobacter pasteurianus | JCM 20384, ATCC 9322, IAM 12073, LMG 1604, NCIMB 7113, NCTC 7113 | 438 (species) |
| 163093 | |
Acetobacter pasteurianus | JCM 21167, ATCC 23758, IAM 14353, LMG 1598, NCIMB 6424, NCTC 6424 | 438 (species) |
| 163094 | |
Acetobacter pasteurianus | JCM 21168, ATCC 23759, IAM 14354, LMG 1601, NCIMB 6429, NCIMB 8133, NCTC 6429 | 438 (species) |
| 163095 | |
Acetobacter pasteurianus | JCM 21171, ATCC 12873, IAM 14358, LMG 1612, NCIMB 8138 | 438 (species) |
| 163096 | |
Acetobacter pasteurianus | JCM 21173, ATCC 23756, IAM 14360, LMG 1628, NCIMB 9015 | 438 (species) |
| 163109 | |
Acetobacter pasteurianus | JCM 21216, ATCC 9323, IAM 14433, LMD 46.3, LMG 1550, LMG 1554, NCIMB 4937, NCIMB 8163, NCTC 4937 | 438 (species) |
| 163110 | |
Acetobacter pasteurianus | JCM 21217, ATCC 12879, IAM 14434, LMD 75.2, LMG 1549 | 438 (species) |
| 163301 | |
Acetobacter pasteurianus | JCM 25075, IFO 13754, NBRC 13754, NCIMB 9015 | 438 (species) |
| 163302 | |
Acetobacter pasteurianus | JCM 25076, LMG 1590 | 481146 (species) |
| 163337 | |
Acetobacter persici | JCM 25330, KACC 19724, LMG 26458, NBRC 111468, NRIC 0961 | 1076596 (species), 1236503 (strain) |
| 163338 | |
Acetobacter persici | JCM 25332 | 1076596 (species) |
| 163090 | |
Acetobacter sicerae | JCM 21163, ATCC 23747, IAM 14349, LMG 1530, NCIMB 8940 | 85325 (species) |
| 163097 | |
Acetobacter sp. | JCM 21174, ATCC 15487, IAM 14361 | 440 (species) |
| 163098 | |
Acetobacter sp. | JCM 21175, ATCC 21409, IAM 14362, LMG 1573 | 440 (species) |
| 14 | |
Acetobacter syzygii | DSM 15548, IFO 16604, JCM 11197, NBRC 16604, NRIC 0483, CIP 107378 | 1307919 (strain), 146476 (species) |
| 17 | |
Acetobacter tropicalis | DSM 15551, IFO 16470, NBRC 16470, NRIC 0312, JCM 10947, BCRC 17166, LMG 19825 | 104102 (species), 1307920 (strain) |
| 163303 | |
Acetobacter tropicalis | JCM 25084, NRIC 0321 | 104102 (species) |
| 160880 | |
Acetobacter xylinum subsp. nonacetoxidans | JCM 10150 | 28448 (species) |
| 5401 | |
Acetobacterium wieringae | DSM 1911, ATCC 43740, JCM 2380 | 52694 (species) |
| 5402 | |
Acetobacterium woodii | DSM 1030, ATCC 29683, JCM 2381, WB 1 | 33952 (species), 931626 (strain) |
| 131580 | |
Acetobacteroides hydrogenigenes | DSM 24657, CGMCC 1.5173, JCM 17603 | 979970 (species) |
| 1579 | |
Acetomicrobium faecale | DSM 20678, JCM 30420 | 937334 (species) |
| 17777 | |
Acetomicrobium mobile | DSM 13181, ATCC BAA-54, JCM 12221 | 891968 (strain), 97477 (species) |
| 318 | |
Achromobacter denitrificans | DSM 30026, ATCC 15173, NCTC 8582, CCUG 407, LMG 1231, CIP 77.15, JCM 5490, LMG 3510, CECT 449, BCRC 12838, BCRC 14342, CCM 3427, CGMCC 1.1800, IAM 12370, IFO 15125, JCM 9657, NBRC 15125, NCIMB 11961, VTT E-991293, NCIB 11961 | 1255278 (strain), 32002 (species) |
| 136807 | |
Achromobacter denitrificans | CIP 60.83, CCUG 61949, LMG 1860, JCM 20672, IAM 12595 | 32002 (species) |
| 141589 | |
Achromobacter denitrificans | CCUG 3353, IAM 12556, JCM 20635, LMG 3412, NCIMB 9387 | 32002 (species) |
| 162416 | |
Achromobacter denitrificans | JCM 19165 | 32002 (species) |
| 162975 | |
Achromobacter denitrificans | JCM 20641, IAM 12563, NCIMB 10771 | 32002 (species) |
| 162976 | |
Achromobacter denitrificans | JCM 20642, IAM 12564, NCIMB 9550 | 32002 (species) |
| 136829 | |
Achromobacter mucicolens | CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, LMG 3415, JCM 9658 | 1389922 (species) |
| 320 | |
Achromobacter piechaudii | DSM 10342, ATCC 43552, CIP 60.75, IAM 12591, LMG 1873, JCM 20668, CGMCC 1.10399, NBRC 102461, NCTC 11970, CCUG 724, NBIMCC 557, Hugh 366-5 | 1216977 (strain), 72556 (species) |
| 162986 | |
Achromobacter piechaudii | JCM 20720, CCM 281, IAM 12661, LMG 1861, NCIMB 1051 | 72556 (species) |
| 309 | |
Achromobacter ruhlandii | DSM 653, ATCC 15749, CCUG 38886, LMG 1866, JCM 20676, CGMCC 1.10394, CIP 77.26, IAM 12600, IAM 12693, IAM 12694, JCM 20751, JCM 20752, NCIMB 11475, VKM B-1333, CCM 7494 | 72557 (species) |
| 156468 | |
Achromobacter ruhlandii | CCUG 61954, LMG 1864, JCM 20746, CDC B7076, GIFU 956, IAM 12687 | 72557 (species) |
| 161615 | |
Achromobacter sp. | JCM 15663 | 134375 (species) |
| 161865 | |
Achromobacter sp. | JCM 16718, KACC 14528 | 134375 (species) |
| 162299 | |
Achromobacter sp. | JCM 18799 | 1295134 (species) |
| 162794 | |
Achromobacter sp. | JCM 20167, IAM 1446 | 134375 (species) |
| 162819 | |
Achromobacter sp. | JCM 20241, IAM 1657 | 134375 (species) |
| 164058 | |
Achromobacter sp. | JCM 31426, MCC 2980, MTCC 12117 | 134375 (species) |
| 297 | |
Achromobacter xylosoxidans | DSM 2402, ATCC 27061, DSM 10346, NRRL 84082, CCUG 56438, CIP 71.32, NCTC 10807, LMG 1863, CCM 2741, IFO 15126, NCIMB 12033, JCM 9659, CCUG 12689, CECT 467, CECT 927, IAM 12684, NBRC 15126, NRRL B-4082, NCIB 12033 | 1216976 (strain), 85698 (species) |
| 136806 | |
Achromobacter xylosoxidans | CIP 58.72, JCM 20749, GIFU 1054, IAM 12690, LMG 3440 | 85698 (species) |
| 136808 | |
Achromobacter xylosoxidans | CIP 62.30, JCM 20673, IAM 12596, LMG 3414 | 85698 (species) |
| 136823 | |
Achromobacter xylosoxidans | CIP 61.20, NBIMCC 151, CCUG 723, LMG 3439, IAM 12598, JCM 20674, GIFU 1055 | 85698 (species) |
| 136825 | |
Achromobacter xylosoxidans | CIP 71.33, JCM 9660, ATCC 27062, IAM 12685, LMG 3429, NCTC 10808 | 85698 (species) |
| 162987 | |
Achromobacter xylosoxidans | JCM 20745, CDC B6949, GIFU 954, IAM 12686, LMG 3420 | 85698 (species) |
| 162988 | |
Achromobacter xylosoxidans | JCM 20747, GIFU 1044, IAM 12688 | 85698 (species) |
Taxonomy
Morphology
Cultivation
Metabolism
Isolation sources
Molecular biology & pathogenicity
Tests & profiles
Special Collections
- DZIF
- Mouse-Microbiome
- Pig-Microbiome
- Chicken-Microbiome
- Arabidopsis-Microbiome
- ESA
- Reichenbach collection of Myxobacteria
- Wink compendium of Actinobacteria
- Culture Collection University Of Gothenburg
- Collection de l’Institut Pasteur
- Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen
- Japan Collection of Microorganisms
- Korean Collection for Type Cultures
- University of Coimbra Bacteria Culture Collection
- Strains from literature