Acetobacter pasteurianus (CIP 103001, IAM 1811, IFO 3299)

Name: Acetobacter pasteurianus (CIP 103001, IAM 1811, IFO 3299)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135988

Type strain

Strain Designation A35

Culture col. no. CIP 103001 IAM 1811 IFO 3299 NBRC 3299 LMG 1553 2 more

NCBI tax ID(s) 1226665 438

Special Collections JCM CIP

Links

Acetobacter pasteurianus A35 is a mesophilic prokaryote that was isolated from Spoiled beer.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 14573

LMG 1553,IAM 1811,IFO 3299,CIP 103001,NBRC 3299,JCM 20274

@ref 20215

Last LPSN update 2025-12-16 10:02:27

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter pasteurianus

Full scientific name Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)

Synonyms (9)

Acetobacter pasteurianus subsp. ascendens
"Acetobacter paradoxus"
"Acetobacter paradoxum"
"Bacterium ascendens"
Acetobacter ascendens
Acetobacter pasteurianus subsp. paradoxus
Acetobacter ascendens
"Mycoderma pasteurianum"
Acetobacter peroxydans

BacDive ID	Other strains from **Acetobacter pasteurianus** (20)	Type strain
4	A. pasteurianus 190, DSM 3509, ATCC 33445, LMD 22.1, JCM ... (type strain)
5	A. pasteurianus Asai A-5, BU 121, Porges 38, A4, DSM 46617, ...
6	A. pasteurianus BU 117, DSM 46618, ATCC 9433, CCM 1774, IFO ...
7	A. pasteurianus BU 343, DSM 46619, ATCC 6439, CCM 1771, IFO ...
24	A. pasteurianus L. 1374, DSM 2347, ATCC 12874, NCIB 8618, ...
25	A. pasteurianus B 4110, DSM 2006, ATCC 838, IAM 14432, NCIB ...
23459	A. pasteurianus AB0220, DSM 25273
135986	A. pasteurianus CIP 102999, IAM 1804, JCM 20270
135987	A. pasteurianus CIP 103000, IAM 1808, IFO 3188, JCM 20273, ...
136130	A. pasteurianus CIP 102721, IAM 1826, JCM 20287
140649	A. pasteurianus NBRC 105184, IFO 3283-01
162841	A. pasteurianus JCM 20272, IAM 1807
162906	A. pasteurianus JCM 20384, ATCC 9322, IAM 12073, LMG 1604, ...
163093	A. pasteurianus JCM 21167, ATCC 23758, IAM 14353, LMG 1598, ...
163094	A. pasteurianus JCM 21168, ATCC 23759, IAM 14354, LMG 1601, ...
163095	A. pasteurianus JCM 21171, ATCC 12873, IAM 14358, LMG 1612, ...
163096	A. pasteurianus JCM 21173, ATCC 23756, IAM 14360, LMG 1628, ...
163109	A. pasteurianus JCM 21216, ATCC 9323, IAM 14433, LMD 46.3, ...
163110	A. pasteurianus JCM 21217, ATCC 12879, IAM 14434, LMD 75.2, ...
163301	A. pasteurianus JCM 25075, IFO 13754, NBRC 13754, NCIMB 9015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.333
125439	negative	94

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
35281	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35281	CIP Medium 1

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35281	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.4

Spore formation

@ref	Spore formation	Confidence
125439		96.4

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation

67770

Sample typeSpoiled beer

Taxonmaps

69479

Global distribution of 16S sequence AB680052 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	1945
Soil Samples	1742
Animal Samples	7743
Plant Samples	937
Total Samples	12367

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35281	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM385096v1 assembly for Acetobacter pasteurianus NBRC 3299	contig	GCA_003850965	1226665.3	2901799356	1226665	26.92

Genome browser: GCA_003850965

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3299	AB680052	1414		438
124043	Acetobacter pasteurianus 16S rRNA, partial sequence.	AB003972	155		438

GC content

@ref	GC-content (mol%)	Method
67770	52.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter pasteurianus NBRC 3299
NCBI: GCA_003850965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.40	no
125439	gram_stain	BacteriaNetⓘ	negative	94.00	no
125439	motility	BacteriaNetⓘ	yes	70.20	no
125439	spore_formation	BacteriaNetⓘ	no	96.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter pasteurianus NBRC 3299
PATRIC: 1226665.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	no
125438	anaerobic	anaerobicⓘ	no	89.35	no
125438	spore-forming	spore-formingⓘ	no	89.62	no
125438	aerobic	aerobicⓘ	yes	77.05	no
125438	thermophilic	thermophileⓘ	no	97.68	no
125438	flagellated	motile2+ⓘ	no	71.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Two NADPH-dependent 2-ketogluconate reductases involved in 2-ketogluconate assimilation in Gluconobacter sp. strain CHM43.	Nakashima S, Matsutani M, Kataoka N, Adachi O, Yamashita R, Matsushita K, Tippayasak U, Theeragool G, Yakushi T.	Appl Environ Microbiol	10.1128/aem.02501-24	2025
Genetics	Comparative Genomic Analysis of Closely Related Acetobacter pasteurianus Strains Provides Evidence of Horizontal Gene Transfer and Reveals Factors Necessary for Thermotolerance.	Matsutani M, Matsumoto N, Hirakawa H, Shiwa Y, Yoshikawa H, Okamoto-Kainuma A, Ishikawa M, Kataoka N, Yakushi T, Matsushita K.	J Bacteriol	10.1128/jb.00553-19	2020
Enzymology	Real-time quantitative PCR (QPCR) and reverse transcription-QPCR for detection and enumeration of total yeasts in wine.	Hierro N, Esteve-Zarzoso B, Gonzalez A, Mas A, Guillamon JM.	Appl Environ Microbiol	10.1128/aem.00388-06	2006
Phylogeny	Oceanospirillum sediminis sp. nov., Isolated From Coastal Sediment in the Yellow Sea.	Zhao H, Tian Y, Sun X, Wu Q, Chen S, Shan J, Zhong Y, Chen X, Gao X, Liu S, Wang R, Du Z, Li B, Ji X.	Curr Microbiol	10.1007/s00284-022-02816-6	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35281	Collection of Institut Pasteur ; Curators of the CIP; CIP 103001
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacter pasteurianus (CIP 103001, IAM 1811, IFO 3299)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003850965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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