Strain identifier

BacDive ID: 135988

Type strain: No

Species: Acetobacter pasteurianus

Strain Designation: A35

Strain history: CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens

NCBI tax ID(s): 1226665 (strain), 438 (species)

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General

@ref: 35281

BacDive-ID: 135988

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter pasteurianus A35 is a mesophilic, Gram-negative bacterium that was isolated from Spoiled beer.

NCBI tax id

NCBI tax idMatching level
1226665strain
438species

strain history

@refhistory
67770IAM 1811 <-- T. Asai A-35 ("Acetobacter ascendens") <-- IFO 3299 <-- K. Kondo 63.
35281CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens

doi: 10.13145/bacdive135988.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter pasteurianus
  • full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Acetobacter peroxydans
    20215Acetobacter paradoxus
    20215Acetobacter paradoxum
    20215Acetobacter pasteurianus subsp. ascendens
    20215Bacterium ascendens
    20215Acetobacter ascendens
    20215Acetobacter pasteurianus subsp. paradoxus
    20215Mycoderma pasteurianum

@ref: 35281

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter pasteurianus

strain designation: A35

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 96.333

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35281MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35281CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperature
35281positivegrowth30
67770positivegrowth25

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Spoiled beer

taxonmaps

  • @ref: 69479
  • File name: preview.99_214.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AB680052
  • Sequence Identity:
  • Total samples: 12367
  • soil counts: 1742
  • aquatic counts: 1945
  • animal counts: 7743
  • plant counts: 937

Safety information

risk assessment

  • @ref: 35281
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3299AB6800521414nuccore438
124043Acetobacter pasteurianus 16S rRNA, partial sequence.AB003972155nuccore438

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter pasteurianus NBRC 32991226665.3wgspatric1226665
66792Acetobacter pasteurianus NBRC 32992901799356draftimg438
67770Acetobacter pasteurianus NBRC 3299GCA_003850965contigncbi1226665

GC content

  • @ref: 67770
  • GC-content: 52.6
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno96.333no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.348no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.616no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.052no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.682no
69480flagellatedmotile2+Ability to perform flagellated movementno71.919no

External links

@ref: 35281

culture collection no.: CIP 103001, IAM 1811, IFO 3299, JCM 20274, LMG 1553, NBRC 3299

straininfo link

  • @ref: 93244
  • straininfo: 14573

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35281Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103001Collection of Institut Pasteur (CIP 103001)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93244Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14573.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy