Strain identifier
BacDive ID: 135988
Type strain:
Species: Acetobacter pasteurianus
Strain Designation: A35
Strain history: CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens
NCBI tax ID(s): 1226665 (strain), 438 (species)
General
@ref: 35281
BacDive-ID: 135988
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter pasteurianus A35 is a mesophilic, Gram-negative bacterium that was isolated from Spoiled beer.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1226665 | strain |
438 | species |
strain history
@ref | history |
---|---|
67770 | IAM 1811 <-- T. Asai A-35 ("Acetobacter ascendens") <-- IFO 3299 <-- K. Kondo 63. |
35281 | CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens |
doi: 10.13145/bacdive135988.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter peroxydans 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter pasteurianus subsp. ascendens 20215 Bacterium ascendens 20215 Acetobacter ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Mycoderma pasteurianum
@ref: 35281
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus
strain designation: A35
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96.333
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35281 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |
35281 | CIP Medium 1 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
35281 | positive | growth | 30 |
67770 | positive | growth | 25 |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Spoiled beer
taxonmaps
- @ref: 69479
- File name: preview.99_214.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB680052
- Sequence Identity:
- Total samples: 12367
- soil counts: 1742
- aquatic counts: 1945
- animal counts: 7743
- plant counts: 937
Safety information
risk assessment
- @ref: 35281
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3299 | AB680052 | 1414 | nuccore | 438 |
124043 | Acetobacter pasteurianus 16S rRNA, partial sequence. | AB003972 | 155 | nuccore | 438 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter pasteurianus NBRC 3299 | 1226665.3 | wgs | patric | 1226665 |
66792 | Acetobacter pasteurianus NBRC 3299 | 2901799356 | draft | img | 438 |
67770 | Acetobacter pasteurianus NBRC 3299 | GCA_003850965 | contig | ncbi | 1226665 |
GC content
- @ref: 67770
- GC-content: 52.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.333 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.348 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.616 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.052 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.682 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 71.919 | no |
External links
@ref: 35281
culture collection no.: CIP 103001, IAM 1811, IFO 3299, JCM 20274, LMG 1553, NBRC 3299
straininfo link
- @ref: 93244
- straininfo: 14573
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35281 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103001 | Collection of Institut Pasteur (CIP 103001) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
93244 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14573.1 | |
124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |