Archive BacDiveID:10.13145/bacdive135988.20230509.8.1

Strain identifier

BacDive ID: 135988

Type strain:

Species: Acetobacter pasteurianus

Strain Designation: A35

Strain history: CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens

NCBI tax ID(s): 1226665 (strain), 438 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 35281

BacDive-ID: 135988

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter pasteurianus A35 is a mesophilic, Gram-negative bacterium that was isolated from Spoiled beer.

NCBI tax id

NCBI tax id	Matching level
1226665	strain
438	species

strain history

@ref	history
67770	IAM 1811 <-- T. Asai A-35 ("Acetobacter ascendens") <-- IFO 3299 <-- K. Kondo 63.
35281	CIP <- 1986, IAM <- T. Asai: strain A35 <- K. Kondo, Japan: strain 63 Acetobacter ascendens

doi: 10.13145/bacdive135988.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus
full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)

synonyms

@ref	synonym
20215	Bacterium ascendens
20215	Acetobacter ascendens
20215	Acetobacter pasteurianus subsp. paradoxus
20215	Acetobacter peroxydans
20215	Mycoderma pasteurianum
20215	Acetobacter paradoxus
20215	Acetobacter paradoxum
20215	Acetobacter pasteurianus subsp. ascendens

@ref: 35281

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter pasteurianus

strain designation: A35

type strain: no

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.997

Culture and growth conditions

culture medium

@ref	name	growth	composition	link
35281	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii	yes	Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35281	CIP Medium 1	yes		https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@ref	growth	type	temperature	range
35281	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.998

observation

@ref: 67770
observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Spoiled beer

taxonmaps

@ref: 69479
File name: preview.99_214.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
Last taxonomy: Acetobacter
16S sequence: AB680052
Sequence Identity:
Total samples: 12367
soil counts: 1742
aquatic counts: 1945
animal counts: 7743
plant counts: 937

Safety information

risk assessment

@ref: 35281
biosafety level: 1
biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@ref: 67770
description: Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3299
accession: AB680052
length: 1414
database: ena
NCBI tax ID: 438

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Acetobacter pasteurianus NBRC 3299	1226665.3	wgs	patric	1226665
66792	Acetobacter pasteurianus NBRC 3299	2901799356	draft	img	438
67770	Acetobacter pasteurianus NBRC 3299	GCA_003850965	contig	ncbi	1226665

GC content

@ref: 67770
GC-content: 52.6
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	no	91.774	no
gram-positive	no	95.737	no
anaerobic	no	98.493	no
halophile	no	90.414	no
spore-forming	no	94.536	no
thermophile	no	96.997	yes
glucose-util	yes	75.378	no
flagellated	no	98.219	no
aerobic	yes	85.117	no
glucose-ferment	no	88.845	no

External links

@ref: 35281

culture collection no.: CIP 103001, IAM 1811, IFO 3299, JCM 20274, LMG 1553, NBRC 3299

straininfo link

@ref: 93244
straininfo: 14573

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
35281	Curators of the CIP		https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103001	Collection of Institut Pasteur (CIP 103001)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
93244	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID14573.1