Name: Acetobacter pasteurianus 190
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4

Type strain:

Species: Acetobacter pasteurianus

Strain Designation: 190

Culture col. no.: DSM 3509, ATCC 33445, LMD 22.1, JCM 7640, BCRC 14145, CCM 2374, CCUG 18125, CGMCC 1.1810, CIP 103108, ICMP 8808, LMG 1262, NBRC 106471, NCCB 22001, NCIMB 12228, VTT E-97830, IMET 10733

Strain history: CIP <- 1988, NCIB <- ATCC <- Lab. voor Microbiol. Delf, The Netherlands: strain 22-1 <- M.W. Beijerinck: strain 190, Acetobacter rancens

NCBI tax ID(s): 438 (species), 481145 (subspecies)

Special Collections

Other strains from Acetobacter pasteurianus

Section

When using BacDive for research please cite our paper

Acetobacter pasteurianus 190 is a mesophilic, Gram-negative bacterium that was isolated from beer.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter pasteurianus**
	Full Scientific Name (LPSN)	Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)

	Synonym	Acetobacter peroxydans
	Synonym	"Acetobacter* paradoxus"*
	Synonym	"Acetobacter* paradoxum"*
	Synonym	Acetobacter pasteurianus subsp. ascendens
	Synonym	"Bacterium* ascendens"*
	Synonym	Acetobacter ascendens
	Synonym	Acetobacter pasteurianus subsp. paradoxus
	Synonym	"Mycoderma* pasteurianum"*

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %95.333
[Ref.: #125439]	Gram stain	negative Confidence in %91.5

Multimedia content

[Ref.: #1403]

Caption:

Micrograph of DSM 3509. Scale bar represents 2 um.

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38091]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #38091]

Culture medium growth

[Ref.: #38091]

Culture medium composition

expand / minimize

[Ref.: #1403]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #1403]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #1403]

Culture medium composition

expand / minimize

[Ref.: #1403]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #1403]

Culture medium composition

expand / minimize

[Ref.: #121620]

Culture medium

CIP Medium 1

[Ref.: #121620]

Culture medium growth

[Ref.: #121620]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1403]	growth	26 °C
[Ref.: #38091]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.554
[Ref.: #125439]	Ability of spore formation	no Confidence in %95.9

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22886]		methanol ChEBI	-	growth

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #22886]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1403]	Sample type/isolated from	beer

[Ref.: #67770]	Sample type/isolated from	Beer

[Ref.: #121620]	Sample type/isolated from	Food, Beer
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Engineered	#Food production	#Fermented
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1403]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121620]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	A.pasteurianus gene for 16S ribosomal RNA	X71863	1479	GenBank ENA	940265 tax ID
[Ref.: #20218]	Acetobacter pasteurianus strain LMG 1262 16S ribosomal RNA gene, partial sequence	GQ240637	1363	GenBank ENA	940265 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus subsp. pasteurianus LMG 1262 16S ribosomal RNA gene, partial sequence	JF793964	1351	GenBank ENA	940265 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3191	AB680026	1413	GenBank ENA	438 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus 16S rRNA, partial sequence	AB003974	154	GenBank ENA	438 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus 16S rRNA, partial sequence	AB003975	155	GenBank ENA	940265 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus strain DSM 3509 16S ribosomal RNA gene, partial sequence	GQ240636	1336	GenBank ENA	940265 tax ID	*
[Ref.: #20218]	Acetobacter pasteurianus 16S rRNA, partial sequence	AB003973	155	GenBank ENA	438 tax ID	*
[Ref.: #124043]	Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 106471.	AB682450	1413	GenBank ENA	438 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471	GCA_003850805	contig	GenBank ENA	940265 tax ID
[Ref.: #67770]	Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 type strain:LMG 1262	GCA_000285275	scaffold	GenBank ENA	940265 tax ID
[Ref.: #67770]	Acetobacter pasteurianus BCRC14145	GCA_003332155	contig	GenBank ENA	438 tax ID
[Ref.: #66792]	Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471	940265.4	wgs	PATRIC	940265 tax ID	*
[Ref.: #66792]	Acetobacter pasteurianus pasteurianus NBRC 106471	2915977242	draft	JGI IMG/M	940265 tax ID	*
[Ref.: #66792]	Acetobacter pasteurianus pasteurianus LMG 1262	2548876776	draft	JGI IMG/M	940265 tax ID	*

[Ref.: #22886]	GC-content	53.2-54.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	52.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter pasteurianus strain BCRC14145 PATRIC: 438.30
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	95.333	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.596	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.554	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	77.386	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.682	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	74.752	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 type strain:LMG 1262 NCBI: GCA_000285275
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	91.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	73.1

Availability in culture collections External links

[Ref.: #1403]

Culture collection no.

DSM 3509, ATCC 33445, LMD 22.1, JCM 7640, BCRC 14145, CCM 2374, CCUG 18125, CGMCC 1.1810, CIP 103108, ICMP 8808, LMG 1262, NBRC 106471, NCCB 22001, NCIMB 12228, VTT E-97830, IMET 10733

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The Peculiar Structure of Acetobacter pasteurianus CIP103108 LPS Core Oligosaccharide.	Marchetti R, Nieto Fabregat F, Pallach M, Gully D, Giraud E, Molinaro A, Duda KA, Silipo A	Chembiochem	10.1002/cbic.202000597	2020	*
Phylogeny	Acetobacter oryzoeni sp. nov., isolated from Korean rice wine vinegar.	Baek JH, Kim KH, Moon JY, Yeo SH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004008	2020	*
Metabolism	Cobalamin is produced by Acetobacter pasteurianus DSM 3509.	Bernhardt C, Zhu X, Schutz D, Fischer M, Bisping B	Appl Microbiol Biotechnol	10.1007/s00253-019-09704-3	2019	*
Pathogenicity	Structure and inflammatory activity of the LPS isolated from Acetobacter pasteurianus CIP103108.	Pallach M, Di Lorenzo F, Facchini FA, Gully D, Giraud E, Peri F, Duda KA, Molinaro A, Silipo A	Int J Biol Macromol	10.1016/j.ijbiomac.2018.08.035	2018	*
Proteome	Proteome analysis of Acetobacter pasteurianus during acetic acid fermentation.	Andres-Barrao C, Saad MM, Chappuis ML, Boffa M, Perret X, Ortega Perez R, Barja F	J Proteomics	10.1016/j.jprot.2011.11.027	2011	*
Phylogeny	Numerical Analysis of Phenotypic Features and Protein Gel Electrophoregrams of a Wide Variety of Acetobacter strains. Proposal for the Improvement of the Taxonomy of the Genus Acetobacter Beijerinck 1898, 215.	Gossele F, Swings J, Kersters K, Pauwels P, De Ley J	Syst Appl Microbiol	10.1016/S0723-2020(83)80020-4	1983	*

References

#1403

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3509

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22886

I Cleenwerck, K Vandemeulebroecke, D Janssens, J Swings: Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.. IJSEM 52: 1551 - 1558 2002 ( DOI 10.1099/00207713-52-5-1551 , PubMed 12361257 )

#38091 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#121620 Collection of Institut Pasteur ; Curators of the CIP; CIP 103108

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Acetobacter pasteurianus strain BCRC14145

Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 type strain:LMG 1262

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