Strain identifier

BacDive ID: 4

Type strain: Yes

Species: Acetobacter pasteurianus

Strain Designation: 190

Strain history: CIP <- 1988, NCIB <- ATCC <- Lab. voor Microbiol. Delf, The Netherlands: strain 22-1 <- M.W. Beijerinck: strain 190, Acetobacter rancens

NCBI tax ID(s): 438 (species)

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General

@ref: 1403

BacDive-ID: 4

DSM-Number: 3509

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter pasteurianus 190 is a mesophilic, Gram-negative bacterium that was isolated from beer.

NCBI tax id

  • NCBI tax id: 438
  • Matching level: species

strain history

@refhistory
1403<- LMD <- M.W. Beijerinck, 190 (Acetobacter rancens)
67770NCIB 12228 <-- ATCC 33445 <-- LMD 22.1 <-- M. W. Beijerinck 190 ("Acetobacter rancens").
121620CIP <- 1988, NCIB <- ATCC <- Lab. voor Microbiol. Delf, The Netherlands: strain 22-1 <- M.W. Beijerinck: strain 190, Acetobacter rancens

doi: 10.13145/bacdive4.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter pasteurianus
  • full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacterium ascendens
    20215Acetobacter ascendens
    20215Acetobacter pasteurianus subsp. paradoxus
    20215Acetobacter peroxydans
    20215Mycoderma pasteurianum
    20215Acetobacter paradoxus
    20215Acetobacter paradoxum
    20215Acetobacter pasteurianus subsp. ascendens

@ref: 1403

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter pasteurianus

full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916

strain designation: 190

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

multimedia

  • @ref: 1403
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_3509.jpg
  • caption: Micrograph of DSM 3509. Scale bar represents 2 um.
  • intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38091MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
1403GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yesName: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/105
1403YPM MEDIUM (DSMZ Medium 360)yesName: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/360
121620CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
38091positivegrowth30mesophilic
1403positivegrowth26mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

  • @ref: 22886
  • Chebi-ID: 17790
  • metabolite: methanol
  • utilization activity: -
  • kind of utilization tested: growth

enzymes

  • @ref: 22886
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample type
1403beer
67770Beer
121620Food, Beer

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Beverage
#Engineered#Food production#Fermented
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Fruit (Seed)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
14031Risk group (German classification)
1216201Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter pasteurianus 16S rRNA, partial sequenceAB003975155ena940265
20218Acetobacter pasteurianus strain DSM 3509 16S ribosomal RNA gene, partial sequenceGQ2406361336ena940265
20218Acetobacter pasteurianus 16S rRNA, partial sequenceAB003973155ena438
20218Paracoccus denitrificans 16S rRNA gene, strain LMD 22.1TY169281395ena266
20218Acetobacter pasteurianus strain LMG 1262 16S ribosomal RNA gene, partial sequenceGQ2406371363ena940265
20218Acetobacter pasteurianus subsp. pasteurianus LMG 1262 16S ribosomal RNA gene, partial sequenceJF7939641351ena940265
20218Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3191AB6800261413ena438
20218Acetobacter pasteurianus 16S rRNA, partial sequenceAB003974154ena438
67770A.pasteurianus gene for 16S ribosomal RNAX718631479ena940265

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter pasteurianus strain BCRC14145438.30wgspatric438
66792Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471940265.9wgspatric940265
66792Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471940265.4wgspatric940265
66792Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471940265.3wgspatric940265
66792Acetobacter pasteurianus pasteurianus NBRC 1064712915977242draftimg940265
66792Acetobacter pasteurianus pasteurianus LMG 12622548876776draftimg940265
66792Acetobacter pasteurianus pasteurianus LMG 12622529293253draftimg940265
67770Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471GCA_003850805contigncbi940265
67770Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 type strain:LMG 1262GCA_000285275scaffoldncbi940265
67770Acetobacter pasteurianus BCRC14145GCA_003332155contigncbi438

GC content

@refGC-contentmethod
2288653.2-54.3high performance liquid chromatography (HPLC)
6777052.7high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno95.626no
anaerobicno98.529no
halophileno91.182no
spore-formingno95.084no
glucose-utilyes73.346no
aerobicyes87.233no
motileno91.039no
flagellatedno98.058no
thermophileno96.519no
glucose-fermentno90.118no

External links

@ref: 1403

culture collection no.: DSM 3509, ATCC 33445, LMD 22.1, JCM 7640, BCRC 14145, CCM 2374, CCUG 18125, CGMCC 1.1810, CIP 103108, ICMP 8808, LMG 1262, NBRC 106471, NCCB 22001, NCIMB 12228, VTT E-97830, IMET 10733

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Proteome22155126Proteome analysis of Acetobacter pasteurianus during acetic acid fermentation.Andres-Barrao C, Saad MM, Chappuis ML, Boffa M, Perret X, Ortega Perez R, Barja FJ Proteomics10.1016/j.jprot.2011.11.0272011Acetic Acid/*metabolism, Acetobacter/genetics/*metabolism/ultrastructure, Culture Media/metabolism, Ethanol/metabolism, Fermentation, Glucose/metabolism, Microscopy, Electron, Scanning, Protein Biosynthesis, Protein Folding, Proteome/*metabolism, Tandem Mass Spectrometry, Two-Dimensional Difference Gel Electrophoresis, Up-RegulationMetabolism
Phylogeny23194734Numerical Analysis of Phenotypic Features and Protein Gel Electrophoregrams of a Wide Variety of Acetobacter strains. Proposal for the Improvement of the Taxonomy of the Genus Acetobacter Beijerinck 1898, 215.Gossele F, Swings J, Kersters K, Pauwels P, De Ley JSyst Appl Microbiol10.1016/S0723-2020(83)80020-41983
Pathogenicity30098357Structure and inflammatory activity of the LPS isolated from Acetobacter pasteurianus CIP103108.Pallach M, Di Lorenzo F, Facchini FA, Gully D, Giraud E, Peri F, Duda KA, Molinaro A, Silipo AInt J Biol Macromol10.1016/j.ijbiomac.2018.08.0352018Acetobacter/*chemistry, Fatty Acids/chemistry, Humans, Inflammation Mediators/*chemistry/isolation & purification/*pharmacology, Lipid A/chemistry, Lipopolysaccharides/*chemistry/immunology/isolation & purification/*pharmacology, Magnetic Resonance Spectroscopy, Monosaccharides/chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Structure-Activity Relationship, Tandem Mass Spectrometry, Toll-Like Receptor 4/agonistsEnzymology
Metabolism30911787Cobalamin is produced by Acetobacter pasteurianus DSM 3509.Bernhardt C, Zhu X, Schutz D, Fischer M, Bisping BAppl Microbiol Biotechnol10.1007/s00253-019-09704-32019Acetobacter/chemistry/*metabolism, Cobamides/metabolism, Lactobacillus reuteri/metabolism, Mass Spectrometry, Propionibacterium/metabolism, Vitamin B 12/*biosynthesis/chemistry
Phylogeny31995463Acetobacter oryzoeni sp. nov., isolated from Korean rice wine vinegar.Baek JH, Kim KH, Moon JY, Yeo SH, Jeon COInt J Syst Evol Microbiol10.1099/ijsem.0.0040082020*Acetic Acid, Acetobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistryBiotechnology
Metabolism32965769The Peculiar Structure of Acetobacter pasteurianus CIP103108 LPS Core Oligosaccharide.Marchetti R, Nieto Fabregat F, Pallach M, Gully D, Giraud E, Molinaro A, Duda KA, Silipo AChembiochem10.1002/cbic.2020005972020Acetobacter/*chemistry/metabolism, Carbohydrate Conformation, Lipopolysaccharides/*chemistry/metabolism, Nuclear Magnetic Resonance, Biomolecular

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1403Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3509)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3509
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22886I Cleenwerck, K Vandemeulebroecke, D Janssens, J Swings10.1099/00207713-52-5-1551Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.IJSEM 52: 1551-1558 200212361257
38091Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14870
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
121620Curators of the CIPCollection of Institut Pasteur (CIP 103108)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103108