Chicken-Microbiome Dashboard

The Chicken-Microbiome project or ChiBAC (Chicken intestinal Bacterial Collection) contains strains isolated from chicken intestines and deposited at the Leibniz Institute DSMZ in connection with the following publication: Zenner C, Hitch TCA, Riedel T, Wortmann E, Tiede S, Buhl EM, Abt B, Neuhaus K, Velge P, Overmann J, Kaspers B, Clavel T. Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. mSystems. 2021 May 18;6(3):e01300-20. doi: 10.1128/mSystems.01300-20

Total strains
43
Total species
41
16S sequence accessions
41
BacDive ID Type strain Species Culture col. no. NCBI tax ID(s)
160643 No Alistipes onderdonkii DSM 109051 328813 (species)
160539 No Anaerotignum lactatifermentans DSM 109233 160404 (species)
160370 No Bifidobacterium sp. DSM 108971 41200 (species)
160478 No Bilophila wadsworthia DSM 109342 35833 (species)
160226 Yes Claveliimonas monacensis DSM 108991, JCM 34591 2779351 (species)
160008 No Clostridium innocuum DSM 107457 1522 (species)
160009 No Clostridium paraputrificum DSM 109054 29363 (species)
160015 No Clostridium tertium DSM 109055 1559 (species)
160714 No Collinsella massiliensis DSM 108992 1232426 (species)
160189 No Enterococcus cecorum DSM 109010 44008 (species)
160028 No Enterococcus durans DSM 109133 53345 (species)
160029 No Enterococcus faecalis DSM 109132 1351 (species)
160030 No Enterococcus faecium DSM 109176 1352 (species)
160037 No Enterococcus gallinarum DSM 109011 1353 (species)
160038 No Enterococcus hirae DSM 109134 1354 (species)
160359 No Escherichia sp. DSM 109009 2779353 (species)
159997 No Flavonifractor plautii DSM 109053 292800 (species)
160623 Yes Gallalistipes aquisgranensis DSM 108975 2779358 (species)
160633 Yes Gallibacter intestinalis DSM 108706, JCM 34592 2779356 (species)
160187 Yes Gemmiger gallinarum DSM 109015, JCM 34595 2049027 (species)
160075 No Lactobacillus crispatus DSM 108970 47770 (species)
160425 No Lactobacillus gallinarum DSM 109013 52242 (species)
160341 No Lactobacillus johnsonii DSM 108981 33959 (species)
160577 No Lactobacillus kitasatonis DSM 109052 237446 (species)
160073 No Ligilactobacillus agilis DSM 109014 1601 (species)
160634 No Ligilactobacillus aviarius DSM 109115 1606 (species)
160571 No Ligilactobacillus saerimneri DSM 109012 228229 (species)
160645 No Ligilactobacillus salivarius DSM 108969 1624 (species)
160570 No Limosilactobacillus ingluviei DSM 108984 148604 (species)
160509 No Limosilactobacillus mucosae DSM 109049 97478 (species)
160079 No Limosilactobacillus oris DSM 108973 1632 (species)
160374 No Limosilactobacillus pontis DSM 109116 35787 (species)
160828 No Limosilactobacillus reuteri DSM 108983 1598 (species)
160305 No Limosilactobacillus vaginalis DSM 108982 1633 (species)
160651 No Megamonas funiformis DSM 110965 437897 (species)
159985 No Odoribacter splanchnicus DSM 109117 28118 (species)
160638 No Paenibacillus dendritiformis DSM 109151 130049 (species)
160609 No Phocaeicola dorei DSM 108974 357276 (species)
160155 Yes Pseudoflavonifractor gallinarum DSM 107456 1980281 (species)
160763 No Rubneribacter badeniensis DSM 108036 2070688 (species)
160181 Yes Ructibacterium gallinarum DSM 107454 2779355 (species)
160160 Yes Thermophilibacter gallinarum DSM 107455, JCM 34593 2779357 (species)
160667 No Veillonella magna DSM 109050 464322 (species)
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