Name: Acetivibrio thermocellus DSM 1237
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2729

Type strain:

Species: Acetivibrio thermocellus

Culture col. no.: DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, CECT 593, IAM 13660, LMG 10435, NBRC 103400, NRRL B-4536, VPI 7372

Strain history: E. Uematsu <-- ATCC 27405 <-- L. DS. Smith VPI 7372 <-- J. Alexander <-- R. McBee.

NCBI tax ID(s): 203119 (strain), 1515 (species)

Other strains from Acetivibrio thermocellus

A. thermocellus LQ8, DSM 1313
A. thermocellus LQR1, DSM 2360, JCM 9323, ATCC ...
A. thermocellus JW 20, DSM 4150, ATCC 31549
A. thermocellus YS, DSM 25991
A. thermocellus AD2, DSM 25992

Section

Acetivibrio thermocellus DSM 1237 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from Sewage digestor sludge.

spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio thermocellus**
	Full Scientific Name (PNU)	Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019

	Synonym	"Ruminiclostridium* thermocellum"*
	Synonym	Clostridium thermocellum
	Synonym	Hungateiclostridium thermocellum

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ACETIVIBRIO MEDIUM (DSMZ Medium 122)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

[Ref.: #545]

Culture medium

RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #545]	growth	55 °C
[Ref.: #22909]	growth	60 °C
[Ref.: #67770]	growth	55 °C

[Ref.: #545]	Temperature range	thermophilic
[Ref.: #22909]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.38

Information on physiology and metabolism Physiology and metabolism

[Ref.: #545]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #22909]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

[Ref.: #545]	Name of produced compound	restriction endonuclease CthI
[Ref.: #545]	Name of produced compound	restriction endonuclease CthII
[Ref.: #545]	Name of produced compound	restriction endonucleases CthI, CthII

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22909]	cellulose ChEBI	+	builds acid from
[Ref.: #22909]	fructose ChEBI	-	builds acid from
[Ref.: #22909]	glucose ChEBI	-	builds acid from
[Ref.: #22909]	mannitol ChEBI	-	builds acid from
[Ref.: #22909]	starch ChEBI	-	builds acid from
[Ref.: #22909]	sucrose ChEBI	-	builds acid from

	Enzymes	Enzyme	EC number
[Ref.: #67770]		cellulase	3.2.1.4

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	purine metabolism	65.96	62 of 94
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	lipid metabolism	51.61	16 of 31
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	citric acid cycle	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	pentose phosphate pathway	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sewage digestor sludge
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence L09173 (>99% sequence identity) for Acetivibrio thermocellus subclade from Microbeatlas

Aquatic Samples	1005
Soil Samples	2753
Animal Samples	2787
Plant Samples	816
Total Samples	7361

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #545]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Clostridium thermocellum (DSM 1237) 16S ribosomal RNA (16S rRNA) gene	L09173	1509	ENA	1515 tax ID	*
[Ref.: #20218]	Clostridium thermocellum gene for 16S ribosomal RNA, partial sequence, strain: JCM 9322	AB558166	1489	ENA	1515 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetivibrio thermocellus ATCC 27405 chromosome, complete genome	CP000568		ENA	203119 tax ID
[Ref.: #66792]	Acetivibrio thermocellus ATCC 27405 ATCC 27405	GCA_000015865	complete	GenBank	203119 tax ID	*
[Ref.: #66792]	Clostridium thermocellum ATCC 27405	203119.11	complete	PATRIC	203119 tax ID	*
[Ref.: #66792]	Acetivibrio thermocellus ATCC 27405	640069309	complete	JGI IMG/M	203119 tax ID	*

[Ref.: #22909]	GC-content	38 mol%
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetivibrio thermocellus ATCC 27405 ATCC 27405 NCBI: GCA_000015865.1
[Ref.: #69480]	anaerobic	yes	100	yes
[Ref.: #69480]	spore-forming	yes	99.999	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	yes	99.38	yes
[Ref.: #69480]	motile	yes	72.612	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acetivibrio thermocellus ATCC 27405 ATCC 27405 NCBI: GCA_000015865.1
[Ref.: #69481]	spore-forming	no	51	no

Availability in culture collections External links

[Ref.: #545]

Culture collection no.

DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, CECT 593, IAM 13660, LMG 10435, NBRC 103400, NRRL B-4536, VPI 7372

[Ref.: #20218]

Associated Passport(s) in StrainInfo

40681, 40680, 401406, 157216

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Enzymology	Construction of engineered RuBisCO Kluyveromyces marxianus for a dual microbial bioethanol production system.	Ha-Tran DM, Lai RY, Nguyen TTM, Huang E, Lo SC, Huang CC	PLoS One	10.1371/journal.pone.0247135	2021	*
Enzymology	Computational modeling and small-angle X-ray scattering based structure analysis and identifying ligand cleavage mechanism by processive endocellulase of family 9 glycoside hydrolase (HtGH9) from Hungateiclostridium thermocellum ATCC 27405.	Kumar K, Singh S, Sharma K, Goyal A	J Mol Graph Model	10.1016/j.jmgm.2020.107808	2020	*
Enzymology	Role of carbohydrate binding module (CBM3c) of GH9 beta-1,4 endoglucanase (Cel9W) from Hungateiclostridium thermocellum ATCC 27405 in catalysis.	Kumar K, Singal S, Goyal A	Carbohydr Res	10.1016/j.carres.2019.107782	2019	*
Metabolism	Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems.	Riley LA, Ji L, Schmitz RJ, Westpheling J, Guss AM	J Ind Microbiol Biotechnol	10.1007/s10295-019-02218-x	2019	*
Enzymology	Construction of Cellulose Binding Domain Fusion FMN-Dependent NADH-Azoreductase and Glucose 1-Dehydrogenase for the Development of Flow Injection Analysis with Fusion Enzymes Immobilized on Cellulose.	Yano S, Hori Y, Kijima T, Konno H, Suyotha W, Takagi K, Wakayama M	J Appl Glycosci (1999)	10.5458/jag.jag.JAG-2018_0011	2019	*
Phylogeny	Comparative Biochemical Analysis of Cellulosomes Isolated from Clostridium clariflavum DSM 19732 and Clostridium thermocellum ATCC 27405 Grown on Plant Biomass.	Shinoda S, Kurosaki M, Kokuzawa T, Hirano K, Takano H, Ueda K, Haruki M, Hirano N	Appl Biochem Biotechnol	10.1007/s12010-018-2864-6	2018	*
Biotechnology	Hyper-production of butyric acid from delignified rice straw by a novel consolidated bioprocess.	Chi X, Li J, Wang X, Zhang Y, Antwi P	Bioresour Technol	10.1016/j.biortech.2018.01.042	2018	*
Enzymology	SAXS and homology modelling based structure characterization of pectin methylesterase a family 8 carbohydrate esterase from Clostridium thermocellum ATCC 27405.	Rajulapati V, Sharma K, Dhillon A, Goyal A	Arch Biochem Biophys	10.1016/j.abb.2018.01.015	2018	*
Metabolism	Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.	Grove TL, Himes PM, Hwang S, Yumerefendi H, Bonanno JB, Kuhlman B, Almo SC, Bowers AA	J Am Chem Soc	10.1021/jacs.7b01283	2017	*
Metabolism	Enhanced biohydrogen production from sugarcane bagasse by Clostridium thermocellum supplemented with CaCO3.	Tian QQ, Liang L, Zhu MJ	Bioresour Technol	10.1016/j.biortech.2015.08.111	2015	*
Metabolism	Butanol production from alkali-pretreated rice straw by co-culture of Clostridium thermocellum and Clostridium saccharoperbutylacetonicum.	Kiyoshi K, Furukawa M, Seyama T, Kadokura T, Nakazato A, Nakayama S	Bioresour Technol	10.1016/j.biortech.2015.03.061	2015	*
Metabolism	Optimization of influential nutrients during direct cellulose fermentation into hydrogen by Clostridium thermocellum.	Islam R, Sparling R, Cicek N, Levin DB	Int J Mol Sci	10.3390/ijms16023116	2015	*
Metabolism	Reassessment of the transhydrogenase/malate shunt pathway in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase.	Taillefer M, Rydzak T, Levin DB, Oresnik IJ, Sparling R	Appl Environ Microbiol	10.1128/AEM.03360-14	2015	*
Enzymology	Crystallization and preliminary X-ray crystallographic analysis of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405.	Goyal A, Ahmed S, Fontes CM, Najmudin S	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X14006402	2014	*
Metabolism	Role of transcription and enzyme activities in redistribution of carbon and electron flux in response to N(2) and H(2) sparging of open-batch cultures of Clostridium thermocellum ATCC 27405.	Carere CR, Rydzak T, Cicek N, Levin DB, Sparling R	Appl Microbiol Biotechnol	10.1007/s00253-013-5500-y	2014	*
Metabolism	Cellulose fermentation by Clostridium thermocellum and a mixed consortium in an automated repetitive batch reactor.	Reed PT, Izquierdo JA, Lynd LR	Bioresour Technol	10.1016/j.biortech.2013.12.051	2013	*
Transcriptome	Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.	Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD	Biotechnol Biofuels	10.1186/1754-6834-6-179	2013	*
Metabolism	Thermostable recombinant beta-(1-->4)-mannanase from C. thermocellum: biochemical characterization and manno-oligosaccharides production.	Ghosh A, Luis AS, Bras JL, Fontes CM, Goyal A	J Agric Food Chem	10.1021/jf403111g	2013	*
Enzymology	A novel alpha-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum.	Ahmed S, Luis AS, Bras JL, Ghosh A, Gautam S, Gupta MN, Fontes CM, Goyal A	PLoS One	10.1371/journal.pone.0073575	2013	*
Metabolism	Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media.	Kridelbaugh DM, Nelson J, Engle NL, Tschaplinski TJ, Graham DE	Bioresour Technol	10.1016/j.biortech.2012.12.006	2012	*
Phylogeny	Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample.	Lv W, Yu Z	J Appl Microbiol	10.1111/jam.12112	2013	*
Metabolism	Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose.	Burton E, Martin VJ	Can J Microbiol	10.1139/cjm-2012-0412	2012	*
Enzymology	Novel xylanase from a holstein cattle rumen metagenomic library and its application in xylooligosaccharide and ferulic Acid production from wheat straw.	Cheng F, Sheng J, Dong R, Men Y, Gan L, Shen L	J Agric Food Chem	10.1021/jf302337w	2012	*
Metabolism	Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms.	Mearls EB, Izquierdo JA, Lynd LR	BMC Microbiol	10.1186/1471-2180-12-180	2012	*
Transcriptome	Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.	Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD	BMC Genomics	10.1186/1471-2164-13-336	2012	*
Metabolism	Detection and characterization of a thermophilic biotin biosynthetic enzyme, 7-keto-8-aminopelargonic acid synthase, from various thermophiles.	Kubota T, Izumi Y	Biosci Biotechnol Biochem	10.1271/bbb.110807	2012	*
Metabolism	A defined growth medium with very low background carbon for culturing Clostridium thermocellum.	Holwerda EK, Hirst KD, Lynd LR	J Ind Microbiol Biotechnol	10.1007/s10295-012-1091-3	2012	*
Enzymology	Cloning of thermostable cellulase genes of Clostridium thermocellum and their secretive expression in Bacillus subtilis.	Liu JM, Xin XJ, Li CX, Xu JH, Bao J	Appl Biochem Biotechnol	10.1007/s12010-011-9456-z	2011	*
Pathogenicity	Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405).	Ellis LD, Holwerda EK, Hogsett D, Rogers S, Shao X, Tschaplinski T, Thorne P, Lynd LR	Bioresour Technol	10.1016/j.biortech.2011.09.128	2011	*
Metabolism	Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum.	Shao X, Raman B, Zhu M, Mielenz JR, Brown SD, Guss AM, Lynd LR	Appl Microbiol Biotechnol	10.1007/s00253-011-3492-z	2011	*
Metabolism	End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405.	Rydzak T, Levin DB, Cicek N, Sparling R	Appl Microbiol Biotechnol	10.1007/s00253-011-3511-0	2011	*
Metabolism	Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.	Raman B, McKeown CK, Rodriguez M Jr, Brown SD, Mielenz JR	BMC Microbiol	10.1186/1471-2180-11-134	2011	*
Enzymology	Isolation and characterization of a new cellulosome-producing Clostridium thermocellum strain.	Tachaapaikoon C, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Kyu KL, Arai T, Murata Y, Mori Y	Biodegradation	10.1007/s10532-011-9486-9	2011	*
Enzymology	CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.	Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC	Glycobiology	10.1093/glycob/cwq106	2010	*
Metabolism	Efficient chemoenzymatic oligosaccharide synthesis by reverse phosphorolysis using cellobiose phosphorylase and cellodextrin phosphorylase from Clostridium thermocellum.	Nakai H, Hachem MA, Petersen BO, Westphal Y, Mannerstedt K, Baumann MJ, Dilokpimol A, Schols HA, Duus JO, Svensson B	Biochimie	10.1016/j.biochi.2010.07.013	2010	*
Genetics	Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production.	Roberts SB, Gowen CM, Brooks JP, Fong SS	BMC Syst Biol	10.1186/1752-0509-4-31	2010	*
Metabolism	Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium.	Geng A, He Y, Qian C, Yan X, Zhou Z	Bioresour Technol	10.1016/j.biortech.2010.01.042	2010	*
Biotechnology	Characterization of the impact of acetate and lactate on ethanolic fermentation by Thermoanaerobacter ethanolicus.	He Q, Lokken PM, Chen S, Zhou J	Bioresour Technol	10.1016/j.biortech.2009.06.084	2009	*
Phylogeny	Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge.	Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.003483-0	2009	*
Metabolism	Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405.	Rydzak T, Levin DB, Cicek N, Sparling R	J Biotechnol	10.1016/j.jbiotec.2009.01.022	2009	*
Metabolism	Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis.	Raman B, Pan C, Hurst GB, Rodriguez M Jr, McKeown CK, Lankford PK, Samatova NF, Mielenz JR	PLoS One	10.1371/journal.pone.0005271	2009	*
Metabolism	Influence of initial cellulose concentration on the carbon flow distribution during batch fermentation by Clostridium thermocellum ATCC 27405.	Islam R, Cicek N, Sparling R, Levin D	Appl Microbiol Biotechnol	10.1007/s00253-008-1763-0	2008	*
Metabolism	Continuous hydrogen production during fermentation of alpha-cellulose by the thermophillic bacterium Clostridium thermocellum.	Magnusson L, Cicek N, Sparling R, Levin D	Biotechnol Bioeng	10.1002/bit.22092	2009	*
Metabolism	Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405.	Carere CR, Kalia V, Sparling R, Cicek N, Levin DB	Indian J Microbiol	10.1007/s12088-008-0036-z	2008	*
Genetics	Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray.	Brown SD, Raman B, McKeown CK, Kale SP, He Z, Mielenz JR	Appl Biochem Biotechnol	10.1007/s12010-007-9087-6	2007	*
Metabolism	Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose.	Zverlov VV, Klupp M, Krauss J, Schwarz WH	J Bacteriol	10.1128/JB.00097-08	2008	*
Enzymology	Cloning and characterization of a heat-stable CMP-N-acylneuraminic acid synthetase from Clostridium thermocellum.	Mizanur RM, Pohl NL	Appl Microbiol Biotechnol	10.1007/s00253-007-1053-2	2007	*
Metabolism	The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors.	Kang S, Barak Y, Lamed R, Bayer EA, Morrison M	Mol Microbiol	10.1111/j.1365-2958.2006.05182.x	2006	*
Metabolism	Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture.	Stevenson DM, Weimer PJ	Appl Environ Microbiol	10.1128/AEM.71.8.4672-4678.2005	2005	*
Metabolism	Wood adhesives prepared from lucerne fiber fermentation residues of Ruminococcus albus and Clostridium thermocellum.	Weimer PJ, Koegel RG, Lorenz LF, Frihart CR, Kenealy WR	Appl Microbiol Biotechnol	10.1007/s00253-004-1767-3	2004	*
Metabolism	Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum.	Zhang YH, Lynd LR	Appl Environ Microbiol	10.1128/AEM.70.3.1563-1569.2004	2004	*
Metabolism	Lic16A of Clostridium thermocellum, a non-cellulosomal, highly complex endo-beta-1,3-glucanase bound to the outer cell surface.	Fuchs KP, Zverlov VV, Velikodvorskaya GA, Lottspeich F, Schwarz WH	Microbiology (Reading)	10.1099/mic.0.26153-0	2003	*
Enzymology	Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures.	Zhang Y, Lynd LR	Anal Chem	10.1021/ac020271n	2003	*
Enzymology	Characterization of 13 newly isolated strains of anaerobic, cellulolytic, thermophilic bacteria.	Ozkan M, Desai SG, Zhang Y, Stevenson DM, Beane J, White EA, Guerinot ML, Lynd LR	J Ind Microbiol Biotechnol	10.1038/sj.jim.7000082	2001	*
Enzymology	Restriction endonuclease activity in Clostridium thermocellum and Clostridium thermosaccharolyticum.	Klapatch TR, Demain AL, Lynd LR	Appl Microbiol Biotechnol	10.1007/s002530050659	1996	*
Enzymology	Cloning and expression of the Clostridium thermocellum celS gene in Escherichia coli.	Wang WK, Kruus K, Wu JH	Appl Microbiol Biotechnol	10.1007/BF00902740	1994	*
Enzymology	Cloning and DNA sequence of the gene coding for Clostridium thermocellum cellulase Ss (CelS), a major cellulosome component.	Wang WK, Kruus K, Wu JH	J Bacteriol	10.1128/jb.175.5.1293-1302.1993	1993	*
Metabolism	Identification of the cellulose-binding domain of the cellulosome subunit S1 from Clostridium thermocellum YS.	Poole DM, Morag E, Lamed R, Bayer EA, Hazlewood GP, Gilbert HJ	FEMS Microbiol Lett	10.1016/0378-1097(92)90022-g	1992	*
Biotechnology	Effect of Yeast Extract and Vitamin B(12) on Ethanol Production from Cellulose by Clostridium thermocellum I-1-B.	Sato K, Goto S, Yonemura S, Sekine K, Okuma E, Takagi Y, Hon-Nami K, Saiki T	Appl Environ Microbiol	10.1128/aem.58.2.734-736.1992	1992	*
Metabolism	Ethanol-induced changes in the membrane lipid composition of Clostridium thermocellum.	Herrero AA, Gomez RF, Roberts MF	Biochim Biophys Acta	10.1016/0005-2736(82)90487-4	1982	*
Pathogenicity	Development of ethanol tolerance in Clostridium thermocellum: effect of growth temperature.	Herrero AA, Gomez RF	Appl Environ Microbiol	10.1128/aem.40.3.571-577.1980	1980	*
Genetics	Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability.	Nakazono-Nagaoka E, Fujikawa T, Shikata A, Tachaapaikoon C, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A	Data Brief	10.1016/j.dib.2019.104274	2019	*
Metabolism	LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.	Wilson CM, Klingeman DM, Schlachter C, Syed MH, Wu CW, Guss AM, Brown SD	Appl Environ Microbiol	10.1128/AEM.02751-16	2017	*
Genetics	Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.	Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N	J Bacteriol	10.1128/JB.00322-11	2011	*
Stress	Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes.	Tyurin MV, Sullivan CR, Lynd LR	Appl Environ Microbiol	10.1128/AEM.71.12.8069-8076.2005	2005	*
Pathogenicity	Electrotransformation of Clostridium thermocellum.	Tyurin MV, Desai SG, Lynd LR	Appl Environ Microbiol	10.1128/AEM.70.2.883-890.2004	2004	*
	Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution.	Ha-Tran DM, Nguyen TTM, Lo SC, Huang CC	Microorganisms	10.3390/microorganisms9071445	2021	*
	Computational and SAXS-based structure insights of pectin acetyl esterase (CtPae12B) of family 12 carbohydrate esterase from Clostridium thermocellum ATCC 27405.	Ahmed J, Kumar K, Sharma K, Fontes CMGA, Goyal A	J Biomol Struct Dyn	10.1080/07391102.2021.1911858	2021	*
	Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis.	Chang JJ, Anandharaj M, Ho CY, Tsuge K, Tsai TY, Ke HM, Lin YJ, Ha Tran MD, Li WH, Huang CC	Biotechnol Biofuels	10.1186/s13068-018-1151-7	2018	*
	Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure.	Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD	Biotechnol Biofuels	10.1186/s13068-016-0445-x	2016	*
	Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain.	Yee KL, Rodriguez M Jr, Thompson OA, Fu C, Wang ZY, Davison BH, Mielenz JR	Biotechnol Biofuels	10.1186/1754-6834-7-75	2014	*
	Primary structure of O-linked carbohydrate chains in the cellulosome of different Clostridium thermocellum strains.	Gerwig GJ, Kamerling JP, Vliegenthart JF, Morag E, Lamed R, Bayer EA	Eur J Biochem	10.1111/j.1432-1033.1991.tb15793.x	1991	*
	Bioconversion of cellulose into ethanol by Clostridium thermocellum--product inhibition.	Kundu S, Ghose TK, Mukhopadhyay SN	Biotechnol Bioeng	10.1002/bit.260250418	1983	*

References

#545	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1237

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22909

Shuangya Chen, Lili Niu, Yongxiang Zhang: Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. IJSEM 60: 2735 - 2738 2010 ( DOI 10.1099/ijs.0.017590-0 , PubMed 20061495 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Acetivibrio thermocellus ATCC 27405 ATCC 27405

Acetivibrio thermocellus ATCC 27405 ATCC 27405

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