Enzymology |
Construction of engineered RuBisCO Kluyveromyces marxianus for a dual microbial bioethanol production system. |
Ha-Tran DM, Lai RY, Nguyen TTM, Huang E, Lo SC, Huang CC |
PLoS One |
10.1371/journal.pone.0247135 |
2021 |
* |
Enzymology |
Computational modeling and small-angle X-ray scattering based structure analysis and identifying ligand cleavage mechanism by processive endocellulase of family 9 glycoside hydrolase (HtGH9) from Hungateiclostridium thermocellum ATCC 27405. |
Kumar K, Singh S, Sharma K, Goyal A |
J Mol Graph Model |
10.1016/j.jmgm.2020.107808 |
2020 |
* |
Enzymology |
Role of carbohydrate binding module (CBM3c) of GH9 beta-1,4 endoglucanase (Cel9W) from Hungateiclostridium thermocellum ATCC 27405 in catalysis. |
Kumar K, Singal S, Goyal A |
Carbohydr Res |
10.1016/j.carres.2019.107782 |
2019 |
* |
Metabolism |
Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems. |
Riley LA, Ji L, Schmitz RJ, Westpheling J, Guss AM |
J Ind Microbiol Biotechnol |
10.1007/s10295-019-02218-x |
2019 |
* |
Enzymology |
Construction of Cellulose Binding Domain Fusion FMN-Dependent NADH-Azoreductase and Glucose 1-Dehydrogenase for the Development of Flow Injection Analysis with Fusion Enzymes Immobilized on Cellulose. |
Yano S, Hori Y, Kijima T, Konno H, Suyotha W, Takagi K, Wakayama M |
J Appl Glycosci (1999) |
10.5458/jag.jag.JAG-2018_0011 |
2019 |
* |
Phylogeny |
Comparative Biochemical Analysis of Cellulosomes Isolated from Clostridium clariflavum DSM 19732 and Clostridium thermocellum ATCC 27405 Grown on Plant Biomass. |
Shinoda S, Kurosaki M, Kokuzawa T, Hirano K, Takano H, Ueda K, Haruki M, Hirano N |
Appl Biochem Biotechnol |
10.1007/s12010-018-2864-6 |
2018 |
* |
Biotechnology |
Hyper-production of butyric acid from delignified rice straw by a novel consolidated bioprocess. |
Chi X, Li J, Wang X, Zhang Y, Antwi P |
Bioresour Technol |
10.1016/j.biortech.2018.01.042 |
2018 |
* |
Enzymology |
SAXS and homology modelling based structure characterization of pectin methylesterase a family 8 carbohydrate esterase from Clostridium thermocellum ATCC 27405. |
Rajulapati V, Sharma K, Dhillon A, Goyal A |
Arch Biochem Biophys |
10.1016/j.abb.2018.01.015 |
2018 |
* |
Metabolism |
Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides. |
Grove TL, Himes PM, Hwang S, Yumerefendi H, Bonanno JB, Kuhlman B, Almo SC, Bowers AA |
J Am Chem Soc |
10.1021/jacs.7b01283 |
2017 |
* |
Metabolism |
Enhanced biohydrogen production from sugarcane bagasse by Clostridium thermocellum supplemented with CaCO3. |
Tian QQ, Liang L, Zhu MJ |
Bioresour Technol |
10.1016/j.biortech.2015.08.111 |
2015 |
* |
Metabolism |
Butanol production from alkali-pretreated rice straw by co-culture of Clostridium thermocellum and Clostridium saccharoperbutylacetonicum. |
Kiyoshi K, Furukawa M, Seyama T, Kadokura T, Nakazato A, Nakayama S |
Bioresour Technol |
10.1016/j.biortech.2015.03.061 |
2015 |
* |
Metabolism |
Optimization of influential nutrients during direct cellulose fermentation into hydrogen by Clostridium thermocellum. |
Islam R, Sparling R, Cicek N, Levin DB |
Int J Mol Sci |
10.3390/ijms16023116 |
2015 |
* |
Metabolism |
Reassessment of the transhydrogenase/malate shunt pathway in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase. |
Taillefer M, Rydzak T, Levin DB, Oresnik IJ, Sparling R |
Appl Environ Microbiol |
10.1128/AEM.03360-14 |
2015 |
* |
Enzymology |
Crystallization and preliminary X-ray crystallographic analysis of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405. |
Goyal A, Ahmed S, Fontes CM, Najmudin S |
Acta Crystallogr F Struct Biol Commun |
10.1107/S2053230X14006402 |
2014 |
* |
Metabolism |
Role of transcription and enzyme activities in redistribution of carbon and electron flux in response to N(2) and H(2) sparging of open-batch cultures of Clostridium thermocellum ATCC 27405. |
Carere CR, Rydzak T, Cicek N, Levin DB, Sparling R |
Appl Microbiol Biotechnol |
10.1007/s00253-013-5500-y |
2014 |
* |
Metabolism |
Cellulose fermentation by Clostridium thermocellum and a mixed consortium in an automated repetitive batch reactor. |
Reed PT, Izquierdo JA, Lynd LR |
Bioresour Technol |
10.1016/j.biortech.2013.12.051 |
2013 |
* |
Transcriptome |
Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass. |
Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD |
Biotechnol Biofuels |
10.1186/1754-6834-6-179 |
2013 |
* |
Metabolism |
Thermostable recombinant beta-(1-->4)-mannanase from C. thermocellum: biochemical characterization and manno-oligosaccharides production. |
Ghosh A, Luis AS, Bras JL, Fontes CM, Goyal A |
J Agric Food Chem |
10.1021/jf403111g |
2013 |
* |
Enzymology |
A novel alpha-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum. |
Ahmed S, Luis AS, Bras JL, Ghosh A, Gautam S, Gupta MN, Fontes CM, Goyal A |
PLoS One |
10.1371/journal.pone.0073575 |
2013 |
* |
Metabolism |
Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media. |
Kridelbaugh DM, Nelson J, Engle NL, Tschaplinski TJ, Graham DE |
Bioresour Technol |
10.1016/j.biortech.2012.12.006 |
2012 |
* |
Phylogeny |
Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample. |
Lv W, Yu Z |
J Appl Microbiol |
10.1111/jam.12112 |
2013 |
* |
Metabolism |
Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose. |
Burton E, Martin VJ |
Can J Microbiol |
10.1139/cjm-2012-0412 |
2012 |
* |
Enzymology |
Novel xylanase from a holstein cattle rumen metagenomic library and its application in xylooligosaccharide and ferulic Acid production from wheat straw. |
Cheng F, Sheng J, Dong R, Men Y, Gan L, Shen L |
J Agric Food Chem |
10.1021/jf302337w |
2012 |
* |
Metabolism |
Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms. |
Mearls EB, Izquierdo JA, Lynd LR |
BMC Microbiol |
10.1186/1471-2180-12-180 |
2012 |
* |
Transcriptome |
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. |
Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD |
BMC Genomics |
10.1186/1471-2164-13-336 |
2012 |
* |
Metabolism |
Detection and characterization of a thermophilic biotin biosynthetic enzyme, 7-keto-8-aminopelargonic acid synthase, from various thermophiles. |
Kubota T, Izumi Y |
Biosci Biotechnol Biochem |
10.1271/bbb.110807 |
2012 |
* |
Metabolism |
A defined growth medium with very low background carbon for culturing Clostridium thermocellum. |
Holwerda EK, Hirst KD, Lynd LR |
J Ind Microbiol Biotechnol |
10.1007/s10295-012-1091-3 |
2012 |
* |
Enzymology |
Cloning of thermostable cellulase genes of Clostridium thermocellum and their secretive expression in Bacillus subtilis. |
Liu JM, Xin XJ, Li CX, Xu JH, Bao J |
Appl Biochem Biotechnol |
10.1007/s12010-011-9456-z |
2011 |
* |
Pathogenicity |
Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405). |
Ellis LD, Holwerda EK, Hogsett D, Rogers S, Shao X, Tschaplinski T, Thorne P, Lynd LR |
Bioresour Technol |
10.1016/j.biortech.2011.09.128 |
2011 |
* |
Metabolism |
Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum. |
Shao X, Raman B, Zhu M, Mielenz JR, Brown SD, Guss AM, Lynd LR |
Appl Microbiol Biotechnol |
10.1007/s00253-011-3492-z |
2011 |
* |
Metabolism |
End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405. |
Rydzak T, Levin DB, Cicek N, Sparling R |
Appl Microbiol Biotechnol |
10.1007/s00253-011-3511-0 |
2011 |
* |
Metabolism |
Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation. |
Raman B, McKeown CK, Rodriguez M Jr, Brown SD, Mielenz JR |
BMC Microbiol |
10.1186/1471-2180-11-134 |
2011 |
* |
Enzymology |
Isolation and characterization of a new cellulosome-producing Clostridium thermocellum strain. |
Tachaapaikoon C, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Kyu KL, Arai T, Murata Y, Mori Y |
Biodegradation |
10.1007/s10532-011-9486-9 |
2011 |
* |
Enzymology |
CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. |
Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC |
Glycobiology |
10.1093/glycob/cwq106 |
2010 |
* |
Metabolism |
Efficient chemoenzymatic oligosaccharide synthesis by reverse phosphorolysis using cellobiose phosphorylase and cellodextrin phosphorylase from Clostridium thermocellum. |
Nakai H, Hachem MA, Petersen BO, Westphal Y, Mannerstedt K, Baumann MJ, Dilokpimol A, Schols HA, Duus JO, Svensson B |
Biochimie |
10.1016/j.biochi.2010.07.013 |
2010 |
* |
Genetics |
Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. |
Roberts SB, Gowen CM, Brooks JP, Fong SS |
BMC Syst Biol |
10.1186/1752-0509-4-31 |
2010 |
* |
Metabolism |
Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium. |
Geng A, He Y, Qian C, Yan X, Zhou Z |
Bioresour Technol |
10.1016/j.biortech.2010.01.042 |
2010 |
* |
Biotechnology |
Characterization of the impact of acetate and lactate on ethanolic fermentation by Thermoanaerobacter ethanolicus. |
He Q, Lokken PM, Chen S, Zhou J |
Bioresour Technol |
10.1016/j.biortech.2009.06.084 |
2009 |
* |
Phylogeny |
Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge. |
Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K |
Int J Syst Evol Microbiol |
10.1099/ijs.0.003483-0 |
2009 |
* |
Metabolism |
Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405. |
Rydzak T, Levin DB, Cicek N, Sparling R |
J Biotechnol |
10.1016/j.jbiotec.2009.01.022 |
2009 |
* |
Metabolism |
Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis. |
Raman B, Pan C, Hurst GB, Rodriguez M Jr, McKeown CK, Lankford PK, Samatova NF, Mielenz JR |
PLoS One |
10.1371/journal.pone.0005271 |
2009 |
* |
Metabolism |
Influence of initial cellulose concentration on the carbon flow distribution during batch fermentation by Clostridium thermocellum ATCC 27405. |
Islam R, Cicek N, Sparling R, Levin D |
Appl Microbiol Biotechnol |
10.1007/s00253-008-1763-0 |
2008 |
* |
Metabolism |
Continuous hydrogen production during fermentation of alpha-cellulose by the thermophillic bacterium Clostridium thermocellum. |
Magnusson L, Cicek N, Sparling R, Levin D |
Biotechnol Bioeng |
10.1002/bit.22092 |
2009 |
* |
Metabolism |
Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405. |
Carere CR, Kalia V, Sparling R, Cicek N, Levin DB |
Indian J Microbiol |
10.1007/s12088-008-0036-z |
2008 |
* |
Genetics |
Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray. |
Brown SD, Raman B, McKeown CK, Kale SP, He Z, Mielenz JR |
Appl Biochem Biotechnol |
10.1007/s12010-007-9087-6 |
2007 |
* |
Metabolism |
Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose. |
Zverlov VV, Klupp M, Krauss J, Schwarz WH |
J Bacteriol |
10.1128/JB.00097-08 |
2008 |
* |
Enzymology |
Cloning and characterization of a heat-stable CMP-N-acylneuraminic acid synthetase from Clostridium thermocellum. |
Mizanur RM, Pohl NL |
Appl Microbiol Biotechnol |
10.1007/s00253-007-1053-2 |
2007 |
* |
Metabolism |
The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors. |
Kang S, Barak Y, Lamed R, Bayer EA, Morrison M |
Mol Microbiol |
10.1111/j.1365-2958.2006.05182.x |
2006 |
* |
Metabolism |
Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture. |
Stevenson DM, Weimer PJ |
Appl Environ Microbiol |
10.1128/AEM.71.8.4672-4678.2005 |
2005 |
* |
Metabolism |
Wood adhesives prepared from lucerne fiber fermentation residues of Ruminococcus albus and Clostridium thermocellum. |
Weimer PJ, Koegel RG, Lorenz LF, Frihart CR, Kenealy WR |
Appl Microbiol Biotechnol |
10.1007/s00253-004-1767-3 |
2004 |
* |
Metabolism |
Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum. |
Zhang YH, Lynd LR |
Appl Environ Microbiol |
10.1128/AEM.70.3.1563-1569.2004 |
2004 |
* |
Metabolism |
Lic16A of Clostridium thermocellum, a non-cellulosomal, highly complex endo-beta-1,3-glucanase bound to the outer cell surface. |
Fuchs KP, Zverlov VV, Velikodvorskaya GA, Lottspeich F, Schwarz WH |
Microbiology (Reading) |
10.1099/mic.0.26153-0 |
2003 |
* |
Enzymology |
Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures. |
Zhang Y, Lynd LR |
Anal Chem |
10.1021/ac020271n |
2003 |
* |
Enzymology |
Characterization of 13 newly isolated strains of anaerobic, cellulolytic, thermophilic bacteria. |
Ozkan M, Desai SG, Zhang Y, Stevenson DM, Beane J, White EA, Guerinot ML, Lynd LR |
J Ind Microbiol Biotechnol |
10.1038/sj.jim.7000082 |
2001 |
* |
Enzymology |
Restriction endonuclease activity in Clostridium thermocellum and Clostridium thermosaccharolyticum. |
Klapatch TR, Demain AL, Lynd LR |
Appl Microbiol Biotechnol |
10.1007/s002530050659 |
1996 |
* |
Enzymology |
Cloning and expression of the Clostridium thermocellum celS gene in Escherichia coli. |
Wang WK, Kruus K, Wu JH |
Appl Microbiol Biotechnol |
10.1007/BF00902740 |
1994 |
* |
Enzymology |
Cloning and DNA sequence of the gene coding for Clostridium thermocellum cellulase Ss (CelS), a major cellulosome component. |
Wang WK, Kruus K, Wu JH |
J Bacteriol |
10.1128/jb.175.5.1293-1302.1993 |
1993 |
* |
Metabolism |
Identification of the cellulose-binding domain of the cellulosome subunit S1 from Clostridium thermocellum YS. |
Poole DM, Morag E, Lamed R, Bayer EA, Hazlewood GP, Gilbert HJ |
FEMS Microbiol Lett |
10.1016/0378-1097(92)90022-g |
1992 |
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Biotechnology |
Effect of Yeast Extract and Vitamin B(12) on Ethanol Production from Cellulose by Clostridium thermocellum I-1-B. |
Sato K, Goto S, Yonemura S, Sekine K, Okuma E, Takagi Y, Hon-Nami K, Saiki T |
Appl Environ Microbiol |
10.1128/aem.58.2.734-736.1992 |
1992 |
* |
Metabolism |
Ethanol-induced changes in the membrane lipid composition of Clostridium thermocellum. |
Herrero AA, Gomez RF, Roberts MF |
Biochim Biophys Acta |
10.1016/0005-2736(82)90487-4 |
1982 |
* |
Pathogenicity |
Development of ethanol tolerance in Clostridium thermocellum: effect of growth temperature. |
Herrero AA, Gomez RF |
Appl Environ Microbiol |
10.1128/aem.40.3.571-577.1980 |
1980 |
* |
Genetics |
Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability. |
Nakazono-Nagaoka E, Fujikawa T, Shikata A, Tachaapaikoon C, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A |
Data Brief |
10.1016/j.dib.2019.104274 |
2019 |
* |
Metabolism |
LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313. |
Wilson CM, Klingeman DM, Schlachter C, Syed MH, Wu CW, Guss AM, Brown SD |
Appl Environ Microbiol |
10.1128/AEM.02751-16 |
2017 |
* |
Genetics |
Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313. |
Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N |
J Bacteriol |
10.1128/JB.00322-11 |
2011 |
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Stress |
Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes. |
Tyurin MV, Sullivan CR, Lynd LR |
Appl Environ Microbiol |
10.1128/AEM.71.12.8069-8076.2005 |
2005 |
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Pathogenicity |
Electrotransformation of Clostridium thermocellum. |
Tyurin MV, Desai SG, Lynd LR |
Appl Environ Microbiol |
10.1128/AEM.70.2.883-890.2004 |
2004 |
* |
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Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution. |
Ha-Tran DM, Nguyen TTM, Lo SC, Huang CC |
Microorganisms |
10.3390/microorganisms9071445 |
2021 |
* |
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Computational and SAXS-based structure insights of pectin acetyl esterase (CtPae12B) of family 12 carbohydrate esterase from Clostridium thermocellum ATCC 27405. |
Ahmed J, Kumar K, Sharma K, Fontes CMGA, Goyal A |
J Biomol Struct Dyn |
10.1080/07391102.2021.1911858 |
2021 |
* |
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Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. |
Chang JJ, Anandharaj M, Ho CY, Tsuge K, Tsai TY, Ke HM, Lin YJ, Ha Tran MD, Li WH, Huang CC |
Biotechnol Biofuels |
10.1186/s13068-018-1151-7 |
2018 |
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Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure. |
Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD |
Biotechnol Biofuels |
10.1186/s13068-016-0445-x |
2016 |
* |
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Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain. |
Yee KL, Rodriguez M Jr, Thompson OA, Fu C, Wang ZY, Davison BH, Mielenz JR |
Biotechnol Biofuels |
10.1186/1754-6834-7-75 |
2014 |
* |
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Primary structure of O-linked carbohydrate chains in the cellulosome of different Clostridium thermocellum strains. |
Gerwig GJ, Kamerling JP, Vliegenthart JF, Morag E, Lamed R, Bayer EA |
Eur J Biochem |
10.1111/j.1432-1033.1991.tb15793.x |
1991 |
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Bioconversion of cellulose into ethanol by Clostridium thermocellum--product inhibition. |
Kundu S, Ghose TK, Mukhopadhyay SN |
Biotechnol Bioeng |
10.1002/bit.260250418 |
1983 |
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