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title = {Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis.},
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title = {Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge.},
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title = {Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium.},
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title = {CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.},
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title = {Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.},
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title = {Isolation and characterization of a new cellulosome-producing Clostridium thermocellum strain.},
author = {Tachaapaikoon C, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Kyu KL, Arai T, Murata Y, Mori Y},
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year = {2011},
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title = {Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.},
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journal = {BMC Microbiol},
year = {2011},
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title = {End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405.},
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title = {Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum.},
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title = {Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405).},
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title = {Cloning of thermostable cellulase genes of Clostridium thermocellum and their secretive expression in Bacillus subtilis.},
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title = {A defined growth medium with very low background carbon for culturing Clostridium thermocellum.},
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title = {Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405.},
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title = {Novel xylanase from a holstein cattle rumen metagenomic library and its application in xylooligosaccharide and ferulic Acid production from wheat straw.},
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title = {Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose.},
author = {Burton E, Martin VJ},
journal = {Can J Microbiol},
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title = {Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media.},
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journal = {Bioresour Technol},
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title = {A novel alpha-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum.},
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journal = {PLoS One},
year = {2013},
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title = {Thermostable recombinant beta-(1-->4)-mannanase from C. thermocellum: biochemical characterization and manno-oligosaccharides production.},
author = {Ghosh A, Luis AS, Bras JL, Fontes CM, Goyal A},
journal = {J Agric Food Chem},
year = {2013},
doi = {10.1021/jf403111g},
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title = {Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.},
author = {Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-179},
pmid = {24295562}
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title = {Cellulose fermentation by Clostridium thermocellum and a mixed consortium in an automated repetitive batch reactor.},
author = {Reed PT, Izquierdo JA, Lynd LR},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.12.051},
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title = {Role of transcription and enzyme activities in redistribution of carbon and electron flux in response to N(2) and H(2) sparging of open-batch cultures of Clostridium thermocellum ATCC 27405.},
author = {Carere CR, Rydzak T, Cicek N, Levin DB, Sparling R},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-013-5500-y},
pmid = {24463715}
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title = {Crystallization and preliminary X-ray crystallographic analysis of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405.},
author = {Goyal A, Ahmed S, Fontes CM, Najmudin S},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2014},
doi = {10.1107/S2053230X14006402},
pmid = {24817722}
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title = {Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain.},
author = {Yee KL, Rodriguez M Jr, Thompson OA, Fu C, Wang ZY, Davison BH, Mielenz JR},
journal = {Biotechnol Biofuels},
year = {2014},
doi = {10.1186/1754-6834-7-75},
pmid = {24876889}
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title = {Reassessment of the transhydrogenase/malate shunt pathway in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase.},
author = {Taillefer M, Rydzak T, Levin DB, Oresnik IJ, Sparling R},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/AEM.03360-14},
pmid = {25616802}
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title = {Optimization of influential nutrients during direct cellulose fermentation into hydrogen by Clostridium thermocellum.},
author = {Islam R, Sparling R, Cicek N, Levin DB},
journal = {Int J Mol Sci},
year = {2015},
doi = {10.3390/ijms16023116},
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@article{lin8174,
title = {Butanol production from alkali-pretreated rice straw by co-culture of Clostridium thermocellum and Clostridium saccharoperbutylacetonicum.},
author = {Kiyoshi K, Furukawa M, Seyama T, Kadokura T, Nakazato A, Nakayama S},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.03.061},
pmid = {25818258}
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@article{lin8173,
title = {Enhanced biohydrogen production from sugarcane bagasse by Clostridium thermocellum supplemented with CaCO3.},
author = {Tian QQ, Liang L, Zhu MJ},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.08.111},
pmid = {26356113}
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@article{lin8170,
title = {Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure.},
author = {Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0445-x},
pmid = {26855670}
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title = {LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.},
author = {Wilson CM, Klingeman DM, Schlachter C, Syed MH, Wu CW, Guss AM, Brown SD},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/AEM.02751-16},
pmid = {28003194}
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title = {Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.},
author = {Grove TL, Himes PM, Hwang S, Yumerefendi H, Bonanno JB, Kuhlman B, Almo SC, Bowers AA},
journal = {J Am Chem Soc},
year = {2017},
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title = {SAXS and homology modelling based structure characterization of pectin methylesterase a family 8 carbohydrate esterase from Clostridium thermocellum ATCC 27405.},
author = {Rajulapati V, Sharma K, Dhillon A, Goyal A},
journal = {Arch Biochem Biophys},
year = {2018},
doi = {10.1016/j.abb.2018.01.015},
pmid = {29378165}
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title = {Hyper-production of butyric acid from delignified rice straw by a novel consolidated bioprocess.},
author = {Chi X, Li J, Wang X, Zhang Y, Antwi P},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.01.042},
pmid = {29413911}
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title = {Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis.},
author = {Chang JJ, Anandharaj M, Ho CY, Tsuge K, Tsai TY, Ke HM, Lin YJ, Ha Tran MD, Li WH, Huang CC},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1151-7},
pmid = {29930703}
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@article{lin8155,
title = {Comparative Biochemical Analysis of Cellulosomes Isolated from Clostridium clariflavum DSM 19732 and Clostridium thermocellum ATCC 27405 Grown on Plant Biomass.},
author = {Shinoda S, Kurosaki M, Kokuzawa T, Hirano K, Takano H, Ueda K, Haruki M, Hirano N},
journal = {Appl Biochem Biotechnol},
year = {2018},
doi = {10.1007/s12010-018-2864-6},
pmid = {30136170}
}
@article{lin8152,
title = {Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems.},
author = {Riley LA, Ji L, Schmitz RJ, Westpheling J, Guss AM},
journal = {J Ind Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s10295-019-02218-x},
pmid = {31342224}
}
@article{lin56923,
title = {Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability.},
author = {Nakazono-Nagaoka E, Fujikawa T, Shikata A, Tachaapaikoon C, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A},
journal = {Data Brief},
year = {2019},
doi = {10.1016/j.dib.2019.104274},
pmid = {31406903}
}
@article{lin8149,
title = {Role of carbohydrate binding module (CBM3c) of GH9 beta-1,4 endoglucanase (Cel9W) from Hungateiclostridium thermocellum ATCC 27405 in catalysis.},
author = {Kumar K, Singal S, Goyal A},
journal = {Carbohydr Res},
year = {2019},
doi = {10.1016/j.carres.2019.107782},
pmid = {31450031}
}
@article{lin8146,
title = {Computational modeling and small-angle X-ray scattering based structure analysis and identifying ligand cleavage mechanism by processive endocellulase of family 9 glycoside hydrolase (HtGH9) from Hungateiclostridium thermocellum ATCC 27405.},
author = {Kumar K, Singh S, Sharma K, Goyal A},
journal = {J Mol Graph Model},
year = {2020},
doi = {10.1016/j.jmgm.2020.107808},
pmid = {33248343}
}
@article{lin107057,
title = {Laboratory Evolution and Reverse Engineering of Clostridium thermocellum for Growth on Glucose and Fructose.},
author = {Yayo J, Kuil T, Olson DG, Lynd LR, Holwerda EK, van Maris AJA.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.03017-20},
pmid = {33608285}
}
@article{lin8145,
title = {Construction of engineered RuBisCO Kluyveromyces marxianus for a dual microbial bioethanol production system.},
author = {Ha-Tran DM, Lai RY, Nguyen TTM, Huang E, Lo SC, Huang CC},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0247135},
pmid = {33661900}
}
@article{lin8144,
title = {Computational and SAXS-based structure insights of pectin acetyl esterase (CtPae12B) of family 12 carbohydrate esterase from Clostridium thermocellum ATCC 27405.},
author = {Ahmed J, Kumar K, Sharma K, Fontes CMGA, Goyal A},
journal = {J Biomol Struct Dyn},
year = {2021},
doi = {10.1080/07391102.2021.1911858},
pmid = {33860720}
}
@article{lin8153,
title = {Construction of Cellulose Binding Domain Fusion FMN-Dependent NADH-Azoreductase and Glucose 1-Dehydrogenase for the Development of Flow Injection Analysis with Fusion Enzymes Immobilized on Cellulose.},
author = {Yano S, Hori Y, Kijima T, Konno H, Suyotha W, Takagi K, Wakayama M},
journal = {J Appl Glycosci (1999)},
year = {2019},
doi = {10.5458/jag.jag.JAG-2018_0011},
pmid = {34354522}
}
@article{lin8141,
title = {Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution.},
author = {Ha-Tran DM, Nguyen TTM, Lo SC, Huang CC},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071445},
pmid = {34361881}
}
@article{lin107060,
title = {Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum.},
author = {Hebdon SD, Gerritsen AT, Chen YP, Marcano JG, Chou KJ.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.695517},
pmid = {34566906}
}
@article{lin107039,
title = {Enhanced Activity by Genetic Complementarity: Heterologous Secretion of Clostridial Cellulases by Bacillus licheniformis and Bacillus velezensis.},
author = {Arsov A, Petrov K, Petrova P.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26185625},
pmid = {34577096}
}
@article{lin107059,
title = {Biological cellulose saccharification using a coculture of Clostridium thermocellum and Thermobrachium celere strain A9.},
author = {Nhim S, Waeonukul R, Uke A, Baramee S, Ratanakhanokchai K, Tachaapaikoon C, Pason P, Liu YJ, Kosugi A.},
journal = {Appl Microbiol Biotechnol},
year = {2022},
doi = {10.1007/s00253-022-11818-0},
pmid = {35157106}
}
@article{lin107056,
title = {The structure of the Clostridium thermocellum RsgI9 ectodomain provides insight into the mechanism of biomass sensing.},
author = {Mahoney BJ, Takayesu A, Zhou A, Cascio D, Clubb RT.},
journal = {Proteins},
year = {2022},
doi = {10.1002/prot.26326},
pmid = {35194841}
}
@article{lin107051,
title = {Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.},
author = {Li A, Benkoulouche M, Ladeveze S, Durand J, Cioci G, Laville E, Potocki-Veronese G.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23063043},
pmid = {35328479}
}
@article{lin107058,
title = {Deciphering Cellodextrin and Glucose Uptake in Clostridium thermocellum.},
author = {Yan F, Dong S, Liu YJ, Yao X, Chen C, Xiao Y, Bayer EA, Shoham Y, You C, Cui Q, Feng Y.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.01476-22},
pmid = {36069444}
}
@article{lin107046,
title = {Novel Function of CtXyn5A from Acetivibrio thermocellus: Dual Arabinoxylanase and Feruloyl Esterase Activity in the Same Active Site.},
author = {Schmitz E, Leontakianakou S, Adlercreutz P, Nordberg Karlsson E, Linares-Pasten JA.},
journal = {Chembiochem},
year = {2023},
doi = {10.1002/cbic.202200667},
pmid = {36449982}
}
@article{lin107052,
title = {Structure and function of microbial alpha-l-fucosidases: a mini review.},
author = {Wu H, Owen CD, Juge N.},
journal = {Essays Biochem},
year = {2023},
doi = {10.1042/ebc20220158},
pmid = {36805644}
}
@article{lin107044,
title = {Role of carbohydrate binding modules, CBM3A and CBM3B in stability and catalysis by a beta-1,4 endoglucanase, AtGH9C-CBM3A-CBM3B from Acetivibrio thermocellus ATCC 27405.},
author = {Mandal A, Thakur A, Goyal A.},
journal = {Int J Biol Macromol},
year = {2023},
doi = {10.1016/j.ijbiomac.2023.125164},
pmid = {37270124}
}
@article{lin107040,
title = {Kinetic characterization of annotated glycolytic enzymes present in cellulose-fermenting Clostridium thermocellum suggests different metabolic roles.},
author = {Daley SR, Gallanosa PM, Sparling R.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02362-8},
pmid = {37438781}
}
@article{lin107050,
title = {Genomic analysis and chitinase characterization of Vibrio harveyi WXL538: insight into its adaptation to the marine environment.},
author = {Ran L, Wang X, He X, Guo R, Wu Y, Zhang P, Zhang XH.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1121720},
pmid = {37465025}
}
@article{lin107055,
title = {Ethanol tolerance in engineered strains of Clostridium thermocellum.},
author = {Olson DG, Maloney MI, Lanahan AA, Cervenka ND, Xia Y, Pech-Canul A, Hon S, Tian L, Ziegler SJ, Bomble YJ, Lynd LR.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02379-z},
pmid = {37710260}
}
@article{lin107054,
title = {Introduction of Cellulolytic Bacterium Bacillus velezensis Z2.6 and Its Cellulase Production Optimization.},
author = {Cai Z, Wang Y, You Y, Yang N, Lu S, Xue J, Xing X, Sha S, Zhao L.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12050979},
pmid = {38792808}
}
@article{lin107043,
title = {Structure elucidation of a multi-modular recombinant endoglucanase, AtGH9C-CBM3A-CBM3B from Acetivibrio thermocellus ATCC 27405 and its substrate binding analysis.},
author = {Mandal A, Ahmed J, Singh S, Goyal A.},
journal = {Int J Biol Macromol},
year = {2024},
doi = {10.1016/j.ijbiomac.2024.133212},
pmid = {38897502}
}
@article{lin107053,
title = {A genomic analysis reveals the diversity of cellulosome displaying bacteria.},
author = {Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1473396},
pmid = {39539715}
}
@article{lin107049,
title = {Effective semi-fed-batch saccharification with high lignocellulose loading using co-culture of Clostridium thermocellum and Thermobrachium celere strain A9.},
author = {Nhim S, Baramee S, Tachaapaikoon C, Pason P, Ratanakhanokchai K, Uke A, Ceballos RM, Kosugi A, Waeonukul R.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1519060},
pmid = {39839112}
}
@article{lin107045,
title = {Cellulolytic and hemicellulolytic capacity of Acetivibrio clariflavus.},
author = {Suchova K, Puchart V.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13471-9},
pmid = {40295343}
}
@article{lin107047,
title = {Non-Catalytic Domains of Glycoside Hydrolase Family 5 from Paenibacillus curdlanolyticus are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues.},
author = {Fatmawati NV, Singkhala A, Ketbot P, Baramee S, Waeonukul R, Tachaapaikoon C, Uke A, Kosugi A, Ratanakhanokchai K, Pason P.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2501.01046},
pmid = {40374542}
}
@article{lin107041,
title = {Construction of an efficient thermostable cellulolytic chimera of beta-glucosidase and beta-1,4-endoglucanase from Acetivibrio thermocellus ATCC 27405 and its application in lignocellulose saccharification.},
author = {Kanwar A, Dhillon A, Goyal A.},
journal = {Int J Biol Macromol},
year = {2025},
doi = {10.1016/j.ijbiomac.2025.146785},
pmid = {40812660}
}
@article{lin107048,
title = {Identification and characterization of a novel, low-temperature-active GH8 endo-beta-1,4-glucanase exhibiting broad pH stability from Antarctic Glacieibacterium sp. PAMC 29367.},
author = {Kim DY, Lee YM, Lee JS, Kim H, Chung CW.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1682092},
pmid = {41195391}
}