Strain identifier
BacDive ID: 2729
Type strain: 
Species: Acetivibrio thermocellus
Strain history: E. Uematsu <-- ATCC 27405 <-- L. DS. Smith VPI 7372 <-- J. Alexander <-- R. McBee.
NCBI tax ID(s): 203119 (strain), 1515 (species)
version 8.1 (current version)
General
@ref: 545
BacDive-ID: 2729
DSM-Number: 1237
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, Gram-positive
description: Acetivibrio thermocellus DSM 1237 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from Sewage digestor sludge.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 203119 | strain |
| 1515 | species |
strain history
| @ref | history |
|---|---|
| 545 | <- NCIB <- G. Hobbs, Torry Research Station, Aberdeen, U.K. <- R. H. McBee, Montana State Univ., Bozeman, USA |
| 67770 | E. Uematsu <-- ATCC 27405 <-- L. DS. Smith VPI 7372 <-- J. Alexander <-- R. McBee. |
doi: 10.13145/bacdive2729.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio thermocellus
- full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
synonyms
@ref synonym 20215 Ruminiclostridium thermocellum 20215 Clostridium thermocellum 20215 Hungateiclostridium thermocellum
@ref: 545
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio thermocellus
full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 545 | ACETIVIBRIO MEDIUM (DSMZ Medium 122) | yes | https://mediadive.dsmz.de/medium/122 | Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 545 | RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) | yes | https://mediadive.dsmz.de/medium/520 | Name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) Composition: Cellulose 9.97009 g/l (optional) Cellobiose 5.98205 g/l K2HPO4 x 3 H2O 2.89133 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l KH2PO4 1.49551 g/l (NH4)2SO4 1.29611 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0747757 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l FeSO4 x 7 H2O 0.00124626 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 22909 | positive | growth | 60 | thermophilic | |
| 545 | positive | growth | 55 | thermophilic | |
| 67770 | positive | growth | 55 | thermophilic | |
| 69480 | thermophilic | 99.38 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 545 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 22909 | yes | |
| 69480 | yes | 99.999 |
compound production
| @ref | compound |
|---|---|
| 545 | restriction endonuclease CthI |
| 545 | restriction endonuclease CthII |
| 545 | restriction endonucleases CthI, CthII |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 22909 | 62968 | cellulose | + | builds acid from |
| 22909 | 28757 | fructose | - | builds acid from |
| 22909 | 17234 | glucose | - | builds acid from |
| 22909 | 29864 | mannitol | - | builds acid from |
| 22909 | 28017 | starch | - | builds acid from |
| 22909 | 17992 | sucrose | - | builds acid from |
enzymes
- @ref: 67770
- value: cellulase
- ec: 3.2.1.4
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sewage digestor sludge
taxonmaps
- @ref: 69479
- File name: preview.99_1153.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_196;96_675;97_781;98_905;99_1153&stattab=map
- Last taxonomy: Acetivibrio thermocellus subclade
- 16S sequence: L09173
- Sequence Identity:
- Total samples: 7361
- soil counts: 2753
- aquatic counts: 1005
- animal counts: 2787
- plant counts: 816
Safety information
risk assessment
- @ref: 545
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium thermocellum (DSM 1237) 16S ribosomal RNA (16S rRNA) gene | L09173 | 1509 | ena | 1515 |
| 20218 | Clostridium thermocellum gene for 16S ribosomal RNA, partial sequence, strain: JCM 9322 | AB558166 | 1489 | ena | 1515 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetivibrio thermocellus ATCC 27405 | GCA_000015865 | complete | ncbi | 203119 |
| 66792 | Clostridium thermocellum ATCC 27405 | 203119.11 | complete | patric | 203119 |
| 66792 | Acetivibrio thermocellus ATCC 27405 | 640069309 | complete | img | 203119 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22909 | 38 | |
| 67770 | 38 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 51 | no |
| motile | yes | 53.3 | no |
| flagellated | no | 68.112 | no |
| gram-positive | yes | 54.378 | no |
| anaerobic | yes | 99.999 | no |
| halophile | no | 94.557 | no |
| spore-forming | yes | 95.48 | yes |
| thermophile | yes | 99.623 | no |
| glucose-util | yes | 84.343 | no |
| aerobic | no | 99.176 | no |
| glucose-ferment | yes | 56.295 | no |
External links
@ref: 545
culture collection no.: DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, CECT 593, IAM 13660, LMG 10435, NBRC 103400, NRRL B-4536, VPI 7372
straininfo link
- @ref: 72257
- straininfo: 10383
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 1490597 | Identification of the cellulose-binding domain of the cellulosome subunit S1 from Clostridium thermocellum YS. | Poole DM, Morag E, Lamed R, Bayer EA, Hazlewood GP, Gilbert HJ | FEMS Microbiol Lett | 10.1016/0378-1097(92)90022-g | 1992 | Amino Acid Sequence, Base Sequence, Binding Sites, Carrier Proteins/*genetics, Cellulase/*genetics, Cellulose/*metabolism, Clostridium/*genetics/*metabolism, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Multienzyme Complexes/*genetics, Restriction Mapping | Genetics |
| 2001693 | Primary structure of O-linked carbohydrate chains in the cellulosome of different Clostridium thermocellum strains. | Gerwig GJ, Kamerling JP, Vliegenthart JF, Morag E, Lamed R, Bayer EA | Eur J Biochem | 10.1111/j.1432-1033.1991.tb15793.x | 1991 | Bacterial Proteins/biosynthesis/*chemistry, Cellulase/*chemistry, Clostridium/*analysis, Glycoproteins/biosynthesis/*chemistry, Magnetic Resonance Spectroscopy | ||
| Metabolism | 7150588 | Ethanol-induced changes in the membrane lipid composition of Clostridium thermocellum. | Herrero AA, Gomez RF, Roberts MF | Biochim Biophys Acta | 10.1016/0005-2736(82)90487-4 | 1982 | Cell Membrane/drug effects/metabolism, Clostridium/drug effects/*metabolism, Ethanol/*pharmacology, Fatty Acids/analysis, Gas Chromatography-Mass Spectrometry, Magnetic Resonance Spectroscopy, Membrane Lipids/isolation & purification/*metabolism | Pathogenicity |
| Pathogenicity | 7425617 | Development of ethanol tolerance in Clostridium thermocellum: effect of growth temperature. | Herrero AA, Gomez RF | Appl Environ Microbiol | 10.1128/aem.40.3.571-577.1980 | 1980 | Clostridium/*drug effects/genetics/growth & development, Drug Tolerance, Ethanol/*pharmacology, Mutation, Temperature | |
| Enzymology | 7765776 | Cloning and expression of the Clostridium thermocellum celS gene in Escherichia coli. | Wang WK, Kruus K, Wu JH | Appl Microbiol Biotechnol | 10.1007/BF00902740 | 1994 | Base Sequence, Biotechnology, Cellulase/*genetics/isolation & purification/metabolism, Cellulose, Cloning, Molecular, Clostridium/*enzymology/*genetics, DNA Primers/genetics, DNA, Bacterial/genetics, Escherichia coli/*genetics, Gene Expression, *Genes, Bacterial, Molecular Sequence Data, Polymerase Chain Reaction, Recombinant Proteins/genetics/isolation & purification/metabolism, Substrate Specificity | Biotechnology |
| Enzymology | 8444792 | Cloning and DNA sequence of the gene coding for Clostridium thermocellum cellulase Ss (CelS), a major cellulosome component. | Wang WK, Kruus K, Wu JH | J Bacteriol | 10.1128/jb.175.5.1293-1302.1993 | 1993 | Amino Acid Sequence, Base Composition, Base Sequence, Binding Sites, Cellulase/*genetics, Cloning, Molecular, Clostridium/*enzymology/genetics/ultrastructure, Codon, DNA, Bacterial, Genes, Bacterial, Molecular Sequence Data, Protein Sorting Signals, Repetitive Sequences, Nucleic Acid, Restriction Mapping, Ribosomes/metabolism, Sequence Homology, Amino Acid | Genetics |
| Enzymology | 11536742 | Restriction endonuclease activity in Clostridium thermocellum and Clostridium thermosaccharolyticum. | Klapatch TR, Demain AL, Lynd LR | Appl Microbiol Biotechnol | 10.1007/s002530050659 | 1996 | Biotechnology, Clostridium/cytology/*enzymology/*genetics, DNA Methylation, DNA Restriction Enzymes/analysis/*genetics/*metabolism, *DNA, Bacterial, Endonucleases/genetics/*metabolism, Escherichia coli, Protoplasts/enzymology | Biotechnology |
| Enzymology | 11781801 | Characterization of 13 newly isolated strains of anaerobic, cellulolytic, thermophilic bacteria. | Ozkan M, Desai SG, Zhang Y, Stevenson DM, Beane J, White EA, Guerinot ML, Lynd LR | J Ind Microbiol Biotechnol | 10.1038/sj.jim.7000082 | 2001 | Bacteria, Anaerobic/genetics/*isolation & purification/metabolism, Cellulose/*metabolism, Hot Temperature, Hydrogenase/genetics, Microbial Sensitivity Tests, Molecular Sequence Data, Phosphate Acetyltransferase/genetics, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics | Phylogeny |
| Enzymology | 12553755 | Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures. | Zhang Y, Lynd LR | Anal Chem | 10.1021/ac020271n | 2003 | Anaerobiosis, Bacterial Proteins/analysis/biosynthesis, *Biomass, Cellulase/*analysis/biosynthesis, Cellulose/*metabolism, Clostridium/*cytology/enzymology/growth & development, Enzyme-Linked Immunosorbent Assay/methods, Fermentation | Metabolism |
| Metabolism | 12686644 | Lic16A of Clostridium thermocellum, a non-cellulosomal, highly complex endo-beta-1,3-glucanase bound to the outer cell surface. | Fuchs KP, Zverlov VV, Velikodvorskaya GA, Lottspeich F, Schwarz WH | Microbiology (Reading) | 10.1099/mic.0.26153-0 | 2003 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Clostridium/*enzymology/genetics, Escherichia coli/enzymology/genetics, Gene Expression Regulation, Bacterial, Glucan Endo-1,3-beta-D-Glucosidase/chemistry/*genetics/*metabolism, Glucans/metabolism, Hordeum/chemistry, Membrane Proteins/*metabolism, Molecular Sequence Data, Polysaccharides/metabolism, Recombinant Proteins/isolation & purification/metabolism, Sequence Analysis, DNA, Substrate Specificity, Transposases/metabolism | Enzymology |
| Pathogenicity | 14766568 | Electrotransformation of Clostridium thermocellum. | Tyurin MV, Desai SG, Lynd LR | Appl Environ Microbiol | 10.1128/AEM.70.2.883-890.2004 | 2004 | Anti-Bacterial Agents/pharmacology, Clostridium/drug effects/*genetics/growth & development, DNA Primers, Drug Resistance, Bacterial/genetics, Electroporation/*instrumentation/*methods, Erythromycin/pharmacology, Escherichia coli/drug effects/genetics/growth & development, Gene Transfer Techniques, Isoniazid/pharmacology, Lincomycin/pharmacology, *Transformation, Bacterial | |
| Metabolism | 15006779 | Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum. | Zhang YH, Lynd LR | Appl Environ Microbiol | 10.1128/AEM.70.3.1563-1569.2004 | 2004 | Cellobiose/*metabolism, Cellulose/*analogs & derivatives/*metabolism, Clostridium/growth & development/*metabolism, Dextrins/*metabolism, Glucans/metabolism, Hydrolysis, Kinetics, Oligosaccharides/metabolism, Phosphorylation, Tetroses/metabolism | Enzymology |
| Metabolism | 15735965 | Wood adhesives prepared from lucerne fiber fermentation residues of Ruminococcus albus and Clostridium thermocellum. | Weimer PJ, Koegel RG, Lorenz LF, Frihart CR, Kenealy WR | Appl Microbiol Biotechnol | 10.1007/s00253-004-1767-3 | 2004 | *Adhesives/chemistry, Biotechnology/*methods, Clostridium thermocellum/growth & development/*metabolism, Fermentation, Formaldehyde/chemistry, Medicago sativa/*metabolism, Phenol/chemistry, Ruminococcus/growth & development/*metabolism, Wood | Biotechnology |
| Metabolism | 16085862 | Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture. | Stevenson DM, Weimer PJ | Appl Environ Microbiol | 10.1128/AEM.71.8.4672-4678.2005 | 2005 | Bacterial Proteins/genetics/metabolism, Cellobiose/*metabolism, Cellulose/*metabolism, Clostridium thermocellum/genetics/*growth & development/metabolism, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fermentation, Gene Expression Regulation, Bacterial, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Reverse Transcriptase Polymerase Chain Reaction | Phylogeny |
| Stress | 16332787 | Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes. | Tyurin MV, Sullivan CR, Lynd LR | Appl Environ Microbiol | 10.1128/AEM.71.12.8069-8076.2005 | 2005 | Bacteria, Anaerobic/*physiology, Clostridium thermocellum/*physiology, Electricity, Electrophysiology, Escherichia coli/physiology, Hot Temperature, Oscillometry, Thermoanaerobacterium/*physiology | |
| Biotechnology | 16348657 | Effect of Yeast Extract and Vitamin B(12) on Ethanol Production from Cellulose by Clostridium thermocellum I-1-B. | Sato K, Goto S, Yonemura S, Sekine K, Okuma E, Takagi Y, Hon-Nami K, Saiki T | Appl Environ Microbiol | 10.1128/aem.58.2.734-736.1992 | 1992 | ||
| Metabolism | 16796673 | The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors. | Kang S, Barak Y, Lamed R, Bayer EA, Morrison M | Mol Microbiol | 10.1111/j.1365-2958.2006.05182.x | 2006 | Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Cellulosomes/*metabolism, Clostridium thermocellum/genetics/*metabolism, *Genes, Bacterial, Molecular Sequence Data, Phylogeny, Serine Proteinase Inhibitors/classification/genetics/*metabolism, Serpins/classification/genetics/*metabolism | Phylogeny |
| Enzymology | 17602221 | Cloning and characterization of a heat-stable CMP-N-acylneuraminic acid synthetase from Clostridium thermocellum. | Mizanur RM, Pohl NL | Appl Microbiol Biotechnol | 10.1007/s00253-007-1053-2 | 2007 | Cloning, Molecular, Clostridium thermocellum/*enzymology/genetics, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Hydrogen-Ion Concentration, Industrial Microbiology/*methods, Kinetics, Molecular Weight, N-Acylneuraminate Cytidylyltransferase/*chemistry/*genetics/isolation & purification/metabolism, Polymerase Chain Reaction, Spectrometry, Mass, Electrospray Ionization, Temperature | Biotechnology |
| Metabolism | 18408027 | Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose. | Zverlov VV, Klupp M, Krauss J, Schwarz WH | J Bacteriol | 10.1128/JB.00097-08 | 2008 | Bacterial Proteins/*genetics/metabolism, Cellulase/genetics/metabolism, Cellulose/*metabolism, Cellulosomes/metabolism, Chromatography, Gel, Clostridium thermocellum/*genetics/metabolism, DNA Mutational Analysis, DNA Transposable Elements/*genetics, Electrophoresis, Polyacrylamide Gel, Hydrolysis, Membrane Proteins/*genetics/metabolism, Molecular Sequence Data, Mutagenesis, *Mutation | Enzymology |
| Genetics | 18478424 | Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray. | Brown SD, Raman B, McKeown CK, Kale SP, He Z, Mielenz JR | Appl Biochem Biotechnol | 10.1007/s12010-007-9087-6 | 2007 | Chromosome Mapping/*instrumentation, Clostridium thermocellum/*genetics, DNA Probes/*genetics, DNA, Bacterial/*genetics, Equipment Design, Equipment Failure Analysis, Gene Expression Profiling/*instrumentation/methods, Genome, Bacterial/*genetics, Oligonucleotide Array Sequence Analysis/*instrumentation/methods, Sensitivity and Specificity | Transcriptome |
| 18548723 | Bioconversion of cellulose into ethanol by Clostridium thermocellum--product inhibition. | Kundu S, Ghose TK, Mukhopadhyay SN | Biotechnol Bioeng | 10.1002/bit.260250418 | 1983 | |||
| Metabolism | 18828175 | Continuous hydrogen production during fermentation of alpha-cellulose by the thermophillic bacterium Clostridium thermocellum. | Magnusson L, Cicek N, Sparling R, Levin D | Biotechnol Bioeng | 10.1002/bit.22092 | 2009 | Acetates/metabolism, Bioelectric Energy Sources, Bioreactors, Carbon Dioxide/metabolism, Cellulose/*metabolism, Clostridium thermocellum/*metabolism, Equipment Design, Equipment Failure Analysis, Ethanol/metabolism, Fermentation, Formates/metabolism, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Lactic Acid/metabolism, Refuse Disposal/methods, Temperature | Biotechnology |
| Metabolism | 18998122 | Influence of initial cellulose concentration on the carbon flow distribution during batch fermentation by Clostridium thermocellum ATCC 27405. | Islam R, Cicek N, Sparling R, Levin D | Appl Microbiol Biotechnol | 10.1007/s00253-008-1763-0 | 2008 | Carbon/*metabolism, Cellulose/*metabolism, Clostridium thermocellum/growth & development/*metabolism, *Fermentation, Hydrogen/metabolism | |
| Metabolism | 19384422 | Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis. | Raman B, Pan C, Hurst GB, Rodriguez M Jr, McKeown CK, Lankford PK, Samatova NF, Mielenz JR | PLoS One | 10.1371/journal.pone.0005271 | 2009 | *Biomass, *Carbohydrate Metabolism, Chromatography, High Pressure Liquid, Clostridium thermocellum/*metabolism, Electrophoresis, Polyacrylamide Gel, Ethanol/metabolism, Fermentation, Poaceae/*metabolism, *Proteomics, Tandem Mass Spectrometry | Enzymology |
| Metabolism | 19428711 | Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405. | Rydzak T, Levin DB, Cicek N, Sparling R | J Biotechnol | 10.1016/j.jbiotec.2009.01.022 | 2009 | Clostridium thermocellum/*enzymology/growth & development/*metabolism, Ethanol/metabolism, Gene Expression Regulation, Bacterial/physiology, Hydrogen/metabolism, Pyruvic Acid/*metabolism | Enzymology |
| Phylogeny | 19542130 | Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge. | Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K | Int J Syst Evol Microbiol | 10.1099/ijs.0.003483-0 | 2009 | Bacterial Typing Techniques, Base Composition, Cellobiose/*metabolism, Cellulose/*metabolism, Clostridium/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, *Hot Temperature, Methane/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Species Specificity | Genetics |
| Biotechnology | 19608413 | Characterization of the impact of acetate and lactate on ethanolic fermentation by Thermoanaerobacter ethanolicus. | He Q, Lokken PM, Chen S, Zhou J | Bioresour Technol | 10.1016/j.biortech.2009.06.084 | 2009 | Acetates/*chemistry, Acids/chemistry, Bioelectric Energy Sources, Bioreactors, Biotechnology/*methods, Carbohydrates/chemistry, Carbon/chemistry, Cellobiose/chemistry, Ethanol/*chemistry, Fermentation, Glucose/chemistry, Industrial Microbiology/instrumentation/*methods, Thermoanaerobacter/*metabolism, Xylose/chemistry | Metabolism |
| Metabolism | 20144864 | Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium. | Geng A, He Y, Qian C, Yan X, Zhou Z | Bioresour Technol | 10.1016/j.biortech.2010.01.042 | 2010 | Base Sequence, Cellulose/*metabolism, Clostridium/classification/*metabolism, Coculture Techniques, Culture Media, DNA Primers, Hydrogen/*metabolism, Polymerase Chain Reaction, Species Specificity | Phylogeny |
| Genetics | 20307315 | Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. | Roberts SB, Gowen CM, Brooks JP, Fong SS | BMC Syst Biol | 10.1186/1752-0509-4-31 | 2010 | *Biofuels, Cellobiose/chemistry, Cellulose/chemistry, Clostridium thermocellum/*genetics, Computational Biology, Computer Simulation, Ethanol/*chemistry, Fructose/chemistry, Genetic Engineering/methods, *Genome, Bacterial, Genomics, Models, Genetic, Proteomics/methods, Systems Biology/methods | Biotechnology |
| Metabolism | 20678539 | Efficient chemoenzymatic oligosaccharide synthesis by reverse phosphorolysis using cellobiose phosphorylase and cellodextrin phosphorylase from Clostridium thermocellum. | Nakai H, Hachem MA, Petersen BO, Westphal Y, Mannerstedt K, Baumann MJ, Dilokpimol A, Schols HA, Duus JO, Svensson B | Biochimie | 10.1016/j.biochi.2010.07.013 | 2010 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/*metabolism, Binding Sites/genetics, Biocatalysis, Cellobiose/biosynthesis/chemistry, Cellulose/analogs & derivatives/biosynthesis/chemistry, Chromatography, High Pressure Liquid, Clostridium thermocellum/*enzymology/genetics/metabolism, Dextrins/biosynthesis/chemistry, Enzyme Stability, Glucosyltransferases/chemistry/genetics/*metabolism, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Molecular Structure, Oligosaccharides/*biosynthesis/chemistry, Protein Structure, Tertiary, Sequence Homology, Amino Acid, Stereoisomerism, Temperature | Enzymology |
| Enzymology | 20696711 | CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. | Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC | Glycobiology | 10.1093/glycob/cwq106 | 2010 | Alteromonadaceae/*enzymology/genetics, Bacterial Proteins/chemistry/*genetics/metabolism, *Carbohydrates, Clostridium thermocellum/*enzymology/genetics, *Databases, Protein, Enzymes/chemistry/classification/*genetics, Fungal Proteins/chemistry/*genetics/metabolism, Genome, Bacterial/physiology, Genome, Fungal/physiology, Molecular Sequence Annotation, Neurospora crassa/*enzymology/genetics | Genetics |
| Genetics | 21460082 | Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313. | Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N | J Bacteriol | 10.1128/JB.00322-11 | 2011 | Anaerobiosis, Cellulose/metabolism, Clostridium thermocellum/*genetics/metabolism/physiology, DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, Hot Temperature, Molecular Sequence Data, *Sequence Analysis, DNA | Metabolism |
| Enzymology | 21637976 | Isolation and characterization of a new cellulosome-producing Clostridium thermocellum strain. | Tachaapaikoon C, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Kyu KL, Arai T, Murata Y, Mori Y | Biodegradation | 10.1007/s10532-011-9486-9 | 2011 | Bacteria, Anaerobic/enzymology/genetics, Cellulose/metabolism, Cellulosomes/*enzymology/ultrastructure, Chromatography, Gel, Cloning, Molecular, Clostridium thermocellum/*enzymology/genetics, Escherichia coli, Glycoside Hydrolases/genetics/*metabolism, Hydrolysis, Lignin/*metabolism, Microscopy, Electron, Scanning, Oryza/metabolism, RNA, Bacterial/biosynthesis/genetics, RNA, Ribosomal, 16S/biosynthesis/genetics, Sewage/microbiology, Thailand, Waste Products | Metabolism |
| Metabolism | 21672225 | Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation. | Raman B, McKeown CK, Rodriguez M Jr, Brown SD, Mielenz JR | BMC Microbiol | 10.1186/1471-2180-11-134 | 2011 | Cellulose/*metabolism, Cellulosomes/metabolism, Clostridium thermocellum/*genetics/growth & development/*metabolism, Fermentation, *Gene Expression Profiling, Gene Expression Regulation, Bacterial, Time Factors | |
| Metabolism | 21837436 | End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405. | Rydzak T, Levin DB, Cicek N, Sparling R | Appl Microbiol Biotechnol | 10.1007/s00253-011-3511-0 | 2011 | Acetates/metabolism, Biomass, Clostridium thermocellum/growth & development/*metabolism, Culture Media/chemistry, Enzymes/metabolism, Fermentation, Formates/metabolism, *Gene Expression Regulation, Bacterial, *Gene Expression Regulation, Enzymologic, Hydrogen/metabolism, Lactic Acid/metabolism, Pyruvic Acid/metabolism | Cultivation |
| Metabolism | 21874277 | Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum. | Shao X, Raman B, Zhu M, Mielenz JR, Brown SD, Guss AM, Lynd LR | Appl Microbiol Biotechnol | 10.1007/s00253-011-3492-z | 2011 | Biomass, Cellobiose/metabolism, Cellulose/metabolism, Clostridium thermocellum/*drug effects/*genetics/growth & development/physiology, DNA Mutational Analysis, Drug Tolerance, Ethanol/*toxicity, Microbial Viability/*drug effects, Mutation | Pathogenicity |
| Pathogenicity | 22055095 | Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405). | Ellis LD, Holwerda EK, Hogsett D, Rogers S, Shao X, Tschaplinski T, Thorne P, Lynd LR | Bioresour Technol | 10.1016/j.biortech.2011.09.128 | 2011 | Amino Acids/analysis, Carbon/*metabolism, Cellobiose/pharmacology, Clostridium thermocellum/drug effects/growth & development/*physiology, Fermentation/drug effects/*physiology, Nitrogen/analysis | Metabolism |
| Enzymology | 22101447 | Cloning of thermostable cellulase genes of Clostridium thermocellum and their secretive expression in Bacillus subtilis. | Liu JM, Xin XJ, Li CX, Xu JH, Bao J | Appl Biochem Biotechnol | 10.1007/s12010-011-9456-z | 2011 | Bacillus subtilis/enzymology/*genetics, Bacterial Proteins/biosynthesis/*genetics/metabolism, Cellulases/biosynthesis/*genetics/metabolism, Cellulose/*metabolism, Cloning, Molecular, Clostridium thermocellum/*chemistry, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Genetic Vectors, Hot Temperature, Hydrolysis, Kinetics, Phosphoric Acids, Recombinant Proteins/biosynthesis/genetics/metabolism, Substrate Specificity, Zea mays/chemistry/metabolism | Metabolism |
| Metabolism | 22350066 | A defined growth medium with very low background carbon for culturing Clostridium thermocellum. | Holwerda EK, Hirst KD, Lynd LR | J Ind Microbiol Biotechnol | 10.1007/s10295-012-1091-3 | 2012 | *Bioreactors, Carbon/metabolism, Cellulose/metabolism, Clostridium thermocellum/*growth & development/metabolism, Culture Media/*chemistry | Cultivation |
| Metabolism | 22484932 | Detection and characterization of a thermophilic biotin biosynthetic enzyme, 7-keto-8-aminopelargonic acid synthase, from various thermophiles. | Kubota T, Izumi Y | Biosci Biotechnol Biochem | 10.1271/bbb.110807 | 2012 | Acetyltransferases/metabolism, Acyl Coenzyme A/metabolism, Acyltransferases/genetics/*metabolism, Alanine/metabolism, Amino Acid Sequence, Amino Acids/metabolism, Bacterial Proteins/genetics/*metabolism, Biotin/*biosynthesis/genetics, Cloning, Molecular, Enzyme Stability, Escherichia coli, Gene Expression, Glycine/metabolism, Gram-Positive Bacteria/*enzymology/genetics, Hot Temperature, Keto Acids/metabolism, Molecular Sequence Data, Open Reading Frames, Recombinant Proteins/genetics/metabolism, Sequence Alignment, Substrate Specificity | Enzymology |
| Transcriptome | 22823947 | Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. | Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD | BMC Genomics | 10.1186/1471-2164-13-336 | 2012 | Chromatography, High Pressure Liquid, Clostridium thermocellum/drug effects/*genetics/growth & development, Computational Biology, Ethanol/*chemistry, Fermentation, Gas Chromatography-Mass Spectrometry, *Metabolome, Oligonucleotide Array Sequence Analysis, Proteome/*analysis, RNA, Bacterial/genetics, Stress, Physiological, Systems Biology, Tandem Mass Spectrometry, *Transcriptome | Proteome |
| Metabolism | 22897981 | Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms. | Mearls EB, Izquierdo JA, Lynd LR | BMC Microbiol | 10.1186/1471-2180-12-180 | 2012 | Cellulose/metabolism, Clostridium thermocellum/*cytology/drug effects/metabolism/*physiology, Ethanol/metabolism/toxicity, L Forms/*physiology, Microbial Viability/drug effects, Spores, Bacterial/*physiology | Pathogenicity |
| Metabolism | 23100718 | Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405. | Carere CR, Kalia V, Sparling R, Cicek N, Levin DB | Indian J Microbiol | 10.1007/s12088-008-0036-z | 2008 | ||
| Enzymology | 23134352 | Novel xylanase from a holstein cattle rumen metagenomic library and its application in xylooligosaccharide and ferulic Acid production from wheat straw. | Cheng F, Sheng J, Dong R, Men Y, Gan L, Shen L | J Agric Food Chem | 10.1021/jf302337w | 2012 | Amino Acid Sequence, Animals, Carboxylic Ester Hydrolases, *Cattle, Cloning, Molecular, Clostridium thermocellum/enzymology, Coumaric Acids/*metabolism, Endo-1,4-beta Xylanases/chemistry/*genetics/*metabolism, Gene Expression, Gene Library, Glucuronates/*metabolism, Hydrogen-Ion Concentration, Metagenomics, Models, Molecular, Molecular Sequence Data, Oligosaccharides/*metabolism, Rumen/*enzymology, Sequence Homology, Species Specificity, Triticum/chemistry | Metabolism |
| Metabolism | 23210995 | Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose. | Burton E, Martin VJ | Can J Microbiol | 10.1139/cjm-2012-0412 | 2012 | Bacterial Proteins/analysis, Biomass, Carbon/metabolism, Cellobiose/metabolism, Cellulose/metabolism, Chromatography, Liquid, Clostridium thermocellum/genetics/growth & development/*metabolism, Gene Expression Regulation, Bacterial, Malates/*metabolism, NADP Transhydrogenases/*metabolism, Nitrogen/*metabolism, Proteome/*analysis, Proteomics/methods, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry, Up-Regulation | Proteome |
| Phylogeny | 23279216 | Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample. | Lv W, Yu Z | J Appl Microbiol | 10.1111/jam.12112 | 2013 | Acetates/metabolism, Cellobiose/metabolism, Cellulase/metabolism, Cellulose/*metabolism, Clostridium thermocellum/classification/genetics/*isolation & purification, Ethanol/metabolism, Fermentation, Molecular Sequence Data, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
| Metabolism | 23306120 | Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media. | Kridelbaugh DM, Nelson J, Engle NL, Tschaplinski TJ, Graham DE | Bioresour Technol | 10.1016/j.biortech.2012.12.006 | 2012 | Biofuels, Cellobiose/metabolism, Cellulose/*metabolism, Clostridium thermocellum/growth & development/*metabolism, Coculture Techniques, *Culture Media, Ethanol/*metabolism, Fermentation, Fluorescent Antibody Technique, Nitrogen/*metabolism, Populus/metabolism, Sulfur/*metabolism, Vitamins/metabolism | Cultivation |
| Enzymology | 24039988 | A novel alpha-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum. | Ahmed S, Luis AS, Bras JL, Ghosh A, Gautam S, Gupta MN, Fontes CM, Goyal A | PLoS One | 10.1371/journal.pone.0073575 | 2013 | Cloning, Molecular, Clostridium thermocellum/*enzymology/genetics/metabolism, Escherichia coli/genetics, Glycoside Hydrolases/chemistry/genetics/*metabolism, Protein Conformation, Recombinant Proteins/chemistry/genetics/metabolism, Substrate Specificity | Metabolism |
| Metabolism | 24224831 | Thermostable recombinant beta-(1-->4)-mannanase from C. thermocellum: biochemical characterization and manno-oligosaccharides production. | Ghosh A, Luis AS, Bras JL, Fontes CM, Goyal A | J Agric Food Chem | 10.1021/jf403111g | 2013 | Bacterial Proteins/*chemistry/genetics/metabolism, Cloning, Molecular, Clostridium thermocellum/chemistry/*enzymology/genetics, Enzyme Stability, Escherichia coli/genetics/metabolism, Hot Temperature, Hydrogen-Ion Concentration, Mannose/metabolism, Oligosaccharides/*biosynthesis, Recombinant Proteins/chemistry/genetics/metabolism, Substrate Specificity, beta-Mannosidase/*chemistry/genetics/metabolism | Enzymology |
| Transcriptome | 24295562 | Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass. | Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD | Biotechnol Biofuels | 10.1186/1754-6834-6-179 | 2013 | ||
| Metabolism | 24413481 | Cellulose fermentation by Clostridium thermocellum and a mixed consortium in an automated repetitive batch reactor. | Reed PT, Izquierdo JA, Lynd LR | Bioresour Technol | 10.1016/j.biortech.2013.12.051 | 2013 | *Bioreactors, Carbon Dioxide/metabolism, Cellulose/*metabolism, Chromatography, High Pressure Liquid, Clostridium thermocellum/*metabolism, Fermentation, Models, Biological, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Regression Analysis | Phylogeny |
| Metabolism | 24463715 | Role of transcription and enzyme activities in redistribution of carbon and electron flux in response to N(2) and H(2) sparging of open-batch cultures of Clostridium thermocellum ATCC 27405. | Carere CR, Rydzak T, Cicek N, Levin DB, Sparling R | Appl Microbiol Biotechnol | 10.1007/s00253-013-5500-y | 2014 | Acetates/metabolism, Carbon/*metabolism, Carbon Dioxide/metabolism, Clostridium/genetics/*metabolism, Electron Transport, Ethanol/metabolism, Gene Expression Profiling, Hydrogen/*metabolism, Malates/metabolism, *Metabolic Flux Analysis, Metabolic Networks and Pathways/genetics, Nitrogen/*metabolism, Pyruvic Acid/metabolism, Transcription, Genetic | Enzymology |
| Enzymology | 24817722 | Crystallization and preliminary X-ray crystallographic analysis of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405. | Goyal A, Ahmed S, Fontes CM, Najmudin S | Acta Crystallogr F Struct Biol Commun | 10.1107/S2053230X14006402 | 2014 | Amino Acid Sequence, Clostridium thermocellum/*enzymology/*genetics, Crystallization, Crystallography, X-Ray, Glycoside Hydrolases/*chemistry/*genetics/isolation & purification, Molecular Sequence Data | Genetics |
| 24876889 | Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain. | Yee KL, Rodriguez M Jr, Thompson OA, Fu C, Wang ZY, Davison BH, Mielenz JR | Biotechnol Biofuels | 10.1186/1754-6834-7-75 | 2014 | |||
| Metabolism | 25616802 | Reassessment of the transhydrogenase/malate shunt pathway in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase. | Taillefer M, Rydzak T, Levin DB, Oresnik IJ, Sparling R | Appl Environ Microbiol | 10.1128/AEM.03360-14 | 2015 | Ammonium Compounds/metabolism, Cellulose/metabolism, Clostridium thermocellum/enzymology/genetics/*metabolism, Coenzymes/metabolism, Diphosphates/metabolism, Ethanol/metabolism, Gene Expression Regulation, Enzymologic, Kinetics, Malate Dehydrogenase/genetics/isolation & purification/*metabolism, Malates/*metabolism, Metabolic Networks and Pathways/*genetics, NAD/metabolism, NADP/metabolism, NADP Transhydrogenases/genetics/isolation & purification/*metabolism, Oxaloacetic Acid/metabolism | Enzymology |
| Metabolism | 25647413 | Optimization of influential nutrients during direct cellulose fermentation into hydrogen by Clostridium thermocellum. | Islam R, Sparling R, Cicek N, Levin DB | Int J Mol Sci | 10.3390/ijms16023116 | 2015 | Batch Cell Culture Techniques, Biomass, Cellulose/*metabolism, Clostridium thermocellum/drug effects/growth & development/*metabolism, Culture Media/pharmacology, Ethanol/metabolism, Hydrogen/*metabolism, Models, Statistical, Oxidation-Reduction | Pathogenicity |
| Metabolism | 25818258 | Butanol production from alkali-pretreated rice straw by co-culture of Clostridium thermocellum and Clostridium saccharoperbutylacetonicum. | Kiyoshi K, Furukawa M, Seyama T, Kadokura T, Nakazato A, Nakayama S | Bioresour Technol | 10.1016/j.biortech.2015.03.061 | 2015 | Alkalies/pharmacology, Butanols/*isolation & purification, Clostridium/growth & development/*metabolism, Lignin/metabolism, Oryza/drug effects/*metabolism, Plant Stems/drug effects/*metabolism, Species Specificity | Phylogeny |
| Metabolism | 26356113 | Enhanced biohydrogen production from sugarcane bagasse by Clostridium thermocellum supplemented with CaCO3. | Tian QQ, Liang L, Zhu MJ | Bioresour Technol | 10.1016/j.biortech.2015.08.111 | 2015 | Biodegradation, Environmental, Biofuels, Calcium Carbonate/administration & dosage/*metabolism, Cellulose/chemistry/metabolism, Clostridium thermocellum/drug effects/growth & development/*metabolism, Fermentation, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Saccharum/drug effects/*metabolism, Sodium Hydroxide/pharmacology | Pathogenicity |
| 26855670 | Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure. | Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD | Biotechnol Biofuels | 10.1186/s13068-016-0445-x | 2016 | |||
| Metabolism | 28003194 | LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313. | Wilson CM, Klingeman DM, Schlachter C, Syed MH, Wu CW, Guss AM, Brown SD | Appl Environ Microbiol | 10.1128/AEM.02751-16 | 2017 | Bacterial Proteins/chemistry/genetics, Cellobiose/metabolism, Cellulose/metabolism, Clostridium thermocellum/*enzymology/*genetics/growth & development, Disaccharides/metabolism, Fermentation, Gene Expression Regulation, Bacterial/*genetics, *Gene Regulatory Networks, Genome, Bacterial, Glycoside Hydrolases/drug effects/genetics, Lipoproteins/antagonists & inhibitors/*genetics/*metabolism, Operon/genetics, Panicum/metabolism, Polysaccharides/genetics, Regulon/*genetics, Sequence Analysis, RNA, Sequence Deletion, Transcription Factors, Transcriptome, Up-Regulation | Transcriptome |
| Metabolism | 28704043 | Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides. | Grove TL, Himes PM, Hwang S, Yumerefendi H, Bonanno JB, Kuhlman B, Almo SC, Bowers AA | J Am Chem Soc | 10.1021/jacs.7b01283 | 2017 | Amino Acid Sequence, Biosynthetic Pathways, Clostridium thermocellum/chemistry/*enzymology/metabolism, Crystallography, X-Ray, Iron-Sulfur Proteins/chemistry/*metabolism, Models, Molecular, Peptides/chemistry/*metabolism, Protein Binding, Protein Conformation, Protein Processing, Post-Translational, S-Adenosylmethionine/chemistry/metabolism, Sulfides/chemistry/*metabolism | Enzymology |
| Enzymology | 29378165 | SAXS and homology modelling based structure characterization of pectin methylesterase a family 8 carbohydrate esterase from Clostridium thermocellum ATCC 27405. | Rajulapati V, Sharma K, Dhillon A, Goyal A | Arch Biochem Biophys | 10.1016/j.abb.2018.01.015 | 2018 | Amino Acid Sequence, Carboxylic Ester Hydrolases/*chemistry, Catalytic Domain, Circular Dichroism, Clostridium thermocellum/*enzymology, Molecular Docking Simulation, Molecular Dynamics Simulation, Protein Structure, Secondary, Scattering, Small Angle, Sequence Homology, Amino Acid, X-Ray Diffraction | |
| Biotechnology | 29413911 | Hyper-production of butyric acid from delignified rice straw by a novel consolidated bioprocess. | Chi X, Li J, Wang X, Zhang Y, Antwi P | Bioresour Technol | 10.1016/j.biortech.2018.01.042 | 2018 | Biomass, *Butyric Acid, Fermentation, *Oryza | |
| 29930703 | Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. | Chang JJ, Anandharaj M, Ho CY, Tsuge K, Tsai TY, Ke HM, Lin YJ, Ha Tran MD, Li WH, Huang CC | Biotechnol Biofuels | 10.1186/s13068-018-1151-7 | 2018 | |||
| Phylogeny | 30136170 | Comparative Biochemical Analysis of Cellulosomes Isolated from Clostridium clariflavum DSM 19732 and Clostridium thermocellum ATCC 27405 Grown on Plant Biomass. | Shinoda S, Kurosaki M, Kokuzawa T, Hirano K, Takano H, Ueda K, Haruki M, Hirano N | Appl Biochem Biotechnol | 10.1007/s12010-018-2864-6 | 2018 | *Biomass, Cell Proliferation, Cellulosomes/*metabolism, Clostridium thermocellum/*cytology, Oryza/*chemistry | Metabolism |
| Metabolism | 31342224 | Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems. | Riley LA, Ji L, Schmitz RJ, Westpheling J, Guss AM | J Ind Microbiol Biotechnol | 10.1007/s10295-019-02218-x | 2019 | Clostridium thermocellum/genetics/*metabolism, DNA Methylation, DNA Restriction-Modification Enzymes/genetics/*metabolism, *Epigenome, Escherichia coli/genetics/metabolism, Metabolic Engineering, Plasmids/genetics | Enzymology |
| Genetics | 31406903 | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability. | Nakazono-Nagaoka E, Fujikawa T, Shikata A, Tachaapaikoon C, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A | Data Brief | 10.1016/j.dib.2019.104274 | 2019 | Metabolism | |
| Enzymology | 31450031 | Role of carbohydrate binding module (CBM3c) of GH9 beta-1,4 endoglucanase (Cel9W) from Hungateiclostridium thermocellum ATCC 27405 in catalysis. | Kumar K, Singal S, Goyal A | Carbohydr Res | 10.1016/j.carres.2019.107782 | 2019 | Bacterial Proteins/chemistry/genetics/metabolism, Catalysis, Catalytic Domain, Cellulose/metabolism, Cloning, Molecular, Clostridiales/classification/*enzymology/genetics, Enzyme Stability, Evolution, Molecular, Glycoside Hydrolases/*chemistry/*genetics/metabolism, Open Reading Frames, Phylogeny, Protein Domains, Substrate Specificity | Metabolism |
| Enzymology | 33248343 | Computational modeling and small-angle X-ray scattering based structure analysis and identifying ligand cleavage mechanism by processive endocellulase of family 9 glycoside hydrolase (HtGH9) from Hungateiclostridium thermocellum ATCC 27405. | Kumar K, Singh S, Sharma K, Goyal A | J Mol Graph Model | 10.1016/j.jmgm.2020.107808 | 2020 | Bacterial Proteins/*chemistry, Catalytic Domain, *Cellulases/chemistry, Clostridiales/*enzymology, Crystallography, X-Ray, *Glycoside Hydrolases/chemistry, Ligands, X-Rays | |
| Enzymology | 33661900 | Construction of engineered RuBisCO Kluyveromyces marxianus for a dual microbial bioethanol production system. | Ha-Tran DM, Lai RY, Nguyen TTM, Huang E, Lo SC, Huang CC | PLoS One | 10.1371/journal.pone.0247135 | 2021 | *Bacterial Proteins/biosynthesis/genetics, Clostridiales/*growth & development, Ethanol/*metabolism, *Kluyveromyces/enzymology/genetics/growth & development, *Microorganisms, Genetically-Modified/enzymology/genetics/growth & development, Rhodopseudomonas/enzymology/*genetics, *Ribulose-Bisphosphate Carboxylase/biosynthesis/genetics | Biotechnology |
| 33860720 | Computational and SAXS-based structure insights of pectin acetyl esterase (CtPae12B) of family 12 carbohydrate esterase from Clostridium thermocellum ATCC 27405. | Ahmed J, Kumar K, Sharma K, Fontes CMGA, Goyal A | J Biomol Struct Dyn | 10.1080/07391102.2021.1911858 | 2021 | |||
| Enzymology | 34354522 | Construction of Cellulose Binding Domain Fusion FMN-Dependent NADH-Azoreductase and Glucose 1-Dehydrogenase for the Development of Flow Injection Analysis with Fusion Enzymes Immobilized on Cellulose. | Yano S, Hori Y, Kijima T, Konno H, Suyotha W, Takagi K, Wakayama M | J Appl Glycosci (1999) | 10.5458/jag.jag.JAG-2018_0011 | 2019 | ||
| 34361881 | Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution. | Ha-Tran DM, Nguyen TTM, Lo SC, Huang CC | Microorganisms | 10.3390/microorganisms9071445 | 2021 |
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